Please find below supplemental material corresponding to publications of our group. Currently, we list 132 supplements.
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The script evaluates substitution patterns of multiple fasta files along a phylogenetic tree. A log-odds score is assigned to each alignment. Scores above 0 indicate that the alignment contains substitutions typical for real splice sites. Negative scores indicate the opposite. Boxplots of the score distributions are given in the supplemental PDF (they help to further interprete the score). Keep in mind that the model was trained on the UCSC 44-way multiz alignments with hg18 as a reference.
Predicted splice sites
The project was actually realized with hg18. Here, we also offer genomic coordinates for hg19 as given by UCSC's liftOver tool.
