Publications - Supplemental material

Please find below supplemental material corresponding to publications of our group. Currently, we list 129 supplements. If you have problems accessing electronic information, please let us know:

©NOTICE: All documents are copyrighted by the authors; If you would like to use all or a portion of any paper, please contact the author.

This supplement is also available at http://www.bioinf.uni-leipzig.de/publications/supplements/09-010
You may use this URL to cite or link to us.

BIOINF 09-010: Evolution of 7SK RNA and Its Protein Partners in Metazoa

Manja Marz*, Alexander Donath*, Nina Verstraete, Van Trung Nguyen, Peter F. Stadler, Olivier Bensaude

For any questions please contact manja@bioinf.uni-leipzig.de

A new secondary structure model

7sk

Alignments

Organisms Fasta Alignment
All Metazoans 7sk 7sk.stk
Add-Ons adds-7sk adds-7sk.stk
Deuterostomes Hexim Hexim ClustalW aln | Hexim MUSCLE aln
Protostomes Hexim Hexim ClustalW aln | Hexim MUSCLE aln
Nematodes Hexim Hexim ClustalW aln | Hexim MUSCLE aln
All Metazoans Hexim Hexim ClustalW aln | Hexim MUSCLE aln
All Metazoans MePCE ClustalW aln | MePCE MUSCLE aln
All Metazoans Larp7 ClustalW aln | Larp7 MUSCLE aln

SplitsTree image of HEXIM sequence alignment

SplitsTree

SplitsTree image of Caenorhabditis 7SK sequence alignment

SplitsTree

Other data

Files for local PSI-tblastn search in Nematoda:
Nematoda HEXIM PSSM
the input sequence

Nematoda HEXIM sequences from the NCBI EST database:
ESTs

Overview of used genomes and their source: