The Complete HOXA Cluster Sequence of a Primitive Ray-Finned Fish Provides Insights into the Duplication and Evolution of HOX Clusters Within the Bony Fish Lineage
C-H. Chiu, Ken Dewar, Günter P. Wagner, Kazuhiko Takahashi, Frank Ruddle, Christina Ledje, Peter Bartsch, Jean-Luc Scemama, Edmund Stellwag, Claudia Fried, Sonja J. Prohaska, Peter F. Stadler, Chris T. Amemiya


Supplement 6d: Morone saxatilis Aa

PFC 5'-3' Number of PF, N Coordinates
(distance to 3' gene)
Sequence
10-9-a 8 3,010-3,044
(3,462 nt)
CGGCTATTGTAGAGTTTTATGACTGGCTGGTATAT
10-9-b 2 3,394-3,475
(3,078 nt)
ACTGTCGTGTGGTTTAGGTAGTTTCATGTTGTTGGGGTCCATTTCTAACTCTGCAACATGAAACTGTCTTAATTGC CCCAGT
10-9pp 10 6,219-6,238
(253 nt)
TGATTTATCCTTTATTGTTC
9-7-pp 9 11,537-11,630 (104 nt) AAAATGGGGTTTGGTGTAAATCTAGGGTGTATTGCTGTCATATATCACACTACCTCGTAAAAACGACACTGAGGAT TCTGGGCCAACAAATCAG
7-6-a 9 14,808-14,945
(3,892 nt)
TCATAAATCCGTTGTTCGTTTAGTGAAAATTTACAACAGTGGTCAATACAACTCTTAACGACCCGGCTCGACATCA TATTGGCCCAGCTGTGTCACGTGACACCGAGCCGTGAACATGAACTTTTCTATATATAATTT
6-5pp 9 18,425-18,613
(275 nt)
TTTACCTCTGGAGGTCACCAAGCAGGATTTACGACTGGTCAACAAAAGCACGTGATTCTCCGCCGTACCCCATATT TGGGTGCCTACGTAAGAGAGAATCAAGTCCATGTCCCACTCATTTCCATAATTCATCATAAATTGTGCAAGGGTGC TATAGGACGCGCTAAACCATAAGAGCCACAAATCAAG
5-4-c 13 21,576-21,750
(7,532 nt)
TGACATTTGGGTGCTAAATGAATGGGGGGTTTTGTCTATGAATTAAATCGTAAAAATCATCCGGAGCGCGGCCAGA TAGGCTCACTGGCCATAAACGGTCACGTGGTAGCCATTAAAGTAAGTTTTATGGTTTTGGGGAGTTGACAGTATAT TGCACATAACATATAATCGCACT
5-4-d 4 23,523-23,578 (5,585 nt) ATCTGCATCTTCTCAGAGCCACCAGCAGAGCTCGCTTTAGGCCAAGTTCACTGTCA
5-4-e 13 24,230-24,303
(4,878 nt)
GATCTTGACTCTCCGCACAAAAGACAGAATAGCTTTGAATTACATATGTTGCACGGTGCACTCCAGGTGAACCC
5-4-pp 12 28,945-29,108 (163 nt) CCATTGGTTCCTGTTTACATGATGCCCACAGGACACGCGGTGATTGGTGGCGCTTCACACGTGACCAGGCAACTTT GTACATTTGACAGGGAGTAGGAGGGTTTTGTGGAGATCAGAAAAACGACAGCGCGATAAAAATTAGTATTGTTGCA CTTCACAAATTA