The Complete HOXA Cluster Sequence of a Primitive Ray-Finned Fish Provides Insights into the Duplication and Evolution of HOX Clusters Within the Bony Fish Lineage
C-H. Chiu, Ken Dewar, Günter P. Wagner, Kazuhiko Takahashi, Frank Ruddle, Christina Ledje, Peter Bartsch, Jean-Luc Scemama, Edmund Stellwag, Claudia Fried, Sonja J. Prohaska, Peter F. Stadler, Chris T. Amemiya


Supplement 6b: Homo sapiens A

PFC 5'-3' Number of PF, N Coordinates
(distance to 3' gene)
Sequence
Upstream of 13-a 2 45,156-45,210
(10,752 nt)
GATTAAAGTTTAATCCGAGGTGTGTGCTCAGACTTGCCATGTTATTTAAACACAT
Upstream of 13-b 1 (n=16nt) 45,454-45,469
(10,454 nt)
AGACATCTAGTGGGAA
Upstream of 13-d 3 53,837-53,897
(2,071 nt)
GGCTGGACTGCAACTTTCAACTTGACCTTGGCCTCCAGCCGTGTCTGACCAGTATGTAAAA
13-11-a 3 59,511-59, 575
(11,330 nt)
CTTAAACCTTGACCTTGACGAAAAAAAAGACAATTTGTGACCTTGACTTTTGACAGCTCATGAAT
13-11pp 6 70,667-70,784
(174 nt)
TGTCAATTTCAACATCGGGTCACATGACCAGCACCTCCCTGCTAAGGATGGGGATAGATTTCCACGTCAGCTTACG TCTCCAAATTTCTACTTCACGGATCCGCTTCAAAGAGGCAGC
11-10-a 3 75,351-75,404
(6,312 nt)
TTGTTTGCTGCCTTTGAACTTCTGCCTTAAAATTGGACATCACCCATAACCTTG
11-10-b 1(n=9nt) 76,034-76,042
( 5,629 nt)
GGCTGGAAC
11-10-c 1(n=18nt) 76,089-76,106
(5,574 nt)
GATCAATGTCAAAGCCGC
10-9-a 8 85,317-85,661
(4,867 nt)
TATTGCTGCTGTGCGTGGAAAAAGACGATGTTTATGTTCTTATAGAATAAAAGCTGTGGAATGAAGCTTTTTAATT TTACCTCTTTTTTGACTTCTTATCTTCACCTTCCACTTTATCCCGTTCACCACTTTTACAACAGGAGGACTAACCC GAGCCCCTGCAATTACTTTAGGCATCTATTTAAATATTACCTAGACGGTCGTAATTTGTCTGGGCCCTATAGCCCT GGTGCCGTAAGGTTTGTCGGCTTTTGTTCAGTTTTATGGCTTGCTAGTATATCTGGATTGTGGCTGTCTTGGACCA GTGATTTCAGTTGAGAGGGGAGCTACATAGACAGAGGAAGC
10-9-b 2 86,431-86,491
(4,097 nt)
GTGATTTAGGTAGTTTCCTGTTGTTGGGATCCACCTTTCTCTCGACAGCACGACACTGCCT
10-9-d 2 90,066-90,146
(461 nt)
TTTTATGTGAGGGGCTCCGCTGGCCGCACTCGCACGCGGGACCCGCGCCTTCTTGATGGCGTGATTAATTGTGATA TAAAA
10-9pp 10 90,272-90,449
(257 nt)
CTTTACATAAAAACATATGGCTTTTGCTATAAAAATTATGACTGCAAAACATCGGACCATTAATAGCGTGCGGAGT GATTTACGCGTTATTGTTCTGCTGGACGGGCACGTGACGCGCACGGCCAATGGGGGCGCGGGCGCCGGCAACTTAT TAGGTGACTGTACTTCCCCCCCGGTG
9-7-a 2 94,195-94,235
(5,425 nt)
ATAAAAGAAAATGAGGGCTGTTACCGTTTATGGGGTGTAAA
9-7-b 8 94,470-94,680
(4,970 nt)
GACGCCCTCTGTTGTTGCAGACAGAAGGAACTTCAAAGAATAGGCAGTAAGAGTGTGCCATAAAGGCCGGGTCTGC GAACTGTCTGGAATTCGTCCCTTAATGAGTTTACAACTGTCCAGCCCCAATTAGGATATTCCACCAAAGCCCTTTC ATTTGTTCATTTGTTCTGTCTGCCGCCGATAAAGCGGCTGCGGAAACACCTCTTTTATT
9-7-pp 9 99, 257-99,340
(183 nt)
ACCACCTGTGAGGACTGCTGAGATTGGCGGAGGCGGTCATGTGGGCGGTCACGTGCTGCGGCGAGCTCCGTCCAAA AGAAAATG
7-6-a 9 103,244-103,410
(4,992 nt)
ATGGGGAAAGGGTCATAAATCCGTTGTTGTTTATGAAAATTTACAACTTTGCAATACAACTTTATGAGTTGTTCGG CCCTTCCATTGGCCGCTGTCGGTCATGTGGATGAGAACCGTGAACATGAACTTTTTTATAATTTCCCTTGCGAGAA TAGAGCCGCATTCTT
7-6pp 10 108,024-108,213
(212 nt)
TGTTTGTAACTTTGCTGCCTCGGTCGCCGCGGTCCCCGGGGAGCGGGCTCCGGCGTTCGCTCCCATTGGCCGCCGC CGCGTCAGCTGGTGCGATTTGCTGCTGTCGCTTTTGGCGTTCGGCCATCCAGAAACAAACCAGTTCGATGACTACT AATAGTTATAGCCAGATGTACTAATACACAACAAATCA
6-5pp 9 112,162-112,359
(216 nt)
AGTGCACGAGTTTACCTCTAGAGGTCATCAGGCAGGATTTACGACTGGACAACAAAAGCACGTGATTCGAAGTCGT ACCCCATATTTGGGTGCCTACGTAGGAGGGAACCAAGTACATGTCCCAGTCATTTCCATAATTCATCATAAATTGT GCAAGGGTGCTATAGACGCACAAACGACCGCGAGCCACAAATCAAG
5-4-a 4 114,053-114,615
(10,749 nt)
ATTAAAATCTGGTTCCAAAACCGGAGAATGAAGTGGAAAAAAGATAATAAGCTGAAAAGCATGAGCATGGCCGCGG CAGGAGGGGCCTTCCGTCCCTGAGTATCTGAGCGTTTAAAGTACTGAGCAGTATTAGCGGATCCCGCGTAGTGTCA GTACTAAGGTGACTTTCTGAAACTCCCTTGTGTTCCTTCTGTGAAGAAGCCCTGTTCTCGTTGCCCTAATTCATCT TTTAATCATGAGCCTGTTTATTGCCATTATAGCGCCTGTATAAGTAGATCTGCTTTCTGTTCATCTCTTTGTCCTG AATGGCTTTGTCTTGAAAAAAAATAGATGTTTTAACTTATTTATATGAAGCAAGCTGTGTTACTTGAAGTAACTAT AACAAAAAAAGAAAAGAGAAAAAAAAACACACAAAAAGTCCCCCTTCAATCTCGTTTAGTGCCAATGTTGTGTGTT GCACTCAAGTTGTTTAACTGTGCATGTGCGTGGAAGTGTTCCTGTCTCAATAGCTCCAAGCTGTTAAAGATATTTT TATTCAAACTACCTATATTCCTTGTGTAATT
5-4-b 5 114,717-114,793
(10,535 nt)
GTGCCTTTATAGGACCCTTTGCACGAACTCTGGAAGTGGCTCTTATAAGCGCAGCTTCAGTGATGTATGTTTTTGT G
5-4-c 13 115,547-15,810
(9,705 nt)
AAAGTTATAAAACAGTAAACTTTATAAGCCCCAGTTCCGGCTATATGACATTTGGGTGCCAAATGAATAGGGTTTT GTCTATGAATTAGATCGTAAAATCATCCATAGCACAGACAGATCGGCTCACTGGCTATAAAACGTCACGTGGGGCC ATTAAAGTAAGTTTTATGGTTTTGGGGAGTTGACATCCAACATTATATACCACATAACATATAATCTCACTAACGC TGGACTCCATTTGACTCTTTTGCAGGCTACGTGTGC
5-4-d 4 119,381-119,436
(5,871 nt)
ATCTGCACACCCTAGGAATCGCCAGCAGAGCACGCTTTAGTACAAGTTCACAGTCA
5-4-e 13 119,820-120,077
(5,432 nt)
TACAACTGCAGGTCAAAAAGTTGAGGGTCAAAAGTTTACATTGTGCAGTGCTCTTAGTCATCTGCCCAGACAGAGT TTGATGTCAATGTTAGAGCTGTGATCTTGACTATCAGCACAAAAGATAAAATGGCTCAGAGTGACGCGTGTATCAC GGTATGGACTCCAGGTGAACCCTAGTGGTTGAATGACCTCAATTACGGAGGAAAGGATAGAAAATTCCTCTTTTCA AGAGTAATACATGCTGTATCTCATCTTGAA
5-4-f 12 121,994-122,212
(3,258 nt)
TGACCTGGGCAAAGCACCCTGCTCTCTAAAAGACACTGTATAGACCTTTTAGAAGCGCAAAGTCCAAGGCCGAGGT GAACTTCAGGTCAGTGCGTCTAACAAATATGAAAATGTCGGCTAGTGAAGGGCGCGCCTTGTGATTTAACAAAGAC TGTCAATGTGTAAGATTAATAAGAAACAAAATGCACACGGTGTCACTGTTCGGTCACTTTGAAACTT
5-4-g 5 122,792-122,860
(2,460 nt)
CTTGCAGTAAAATGTCAAAATGTCGGTGTTGAGATAACACTTGGTGGTCCTGGCTCCGTTTGTGTTTAT
4-3-a 5 128,868-128,945
(16,478 nt)
GAATCATTAATCACCTCAAACAATAAATACTTCTTTGTAATTCAACAGCAATTCTGAAAGGCATTCTCTGGGAAAA GT
4-3-b 5 142,345-142,462
(3,000 nt)
GCTCGTCAGAAGTTAAGGTAAGCAGGGCCGCAACCGGCCGCTCCCGGCGCTGAATGGCGGAGTTTACGTCTCGGTG ATTTATGGCTGCAGACTTAAATCTCGGTTCAAGAAGAGTTCA
3-2-a 5 152,808-152,911
(677 nt)
GTGTCAAAACTTTGAAGATTAATGGATTACTTTGTTAATGACTGCAGGCGTCAGACTGAGGTGCTTAAATGATTTG TGAGGTGCGAGGCGTCTTCCCGACAGTC
3-2pp 11 153,150-153,375
(335, nt)
GCTGGCCCCCAATGAGGCGTTCCTTCCCGACTTTTTTGGATCAATCAAACAGACAGTGGCTTCTTTTGATTAAAGC CCAAATTGTCATTGGGCAGAAGCAATCATGTGACAGCCAATTCGGTCCAATTTCAACCTTGTCTCCATGAATTCAA TAGTTTAATAGTAGCGCGGTCCCCATACGGCTGTAATCAGTGAATTAGAAAAAAAACACCCTAGCAGCGATATT
2-1-a 6 156,894-157,044
(3,179 nt)
CTCATAAATCAAACGCTTTCTATGAATGAGAATGTCATCAAAGAGATCAATTGCAGGAACACATGCACAAATAAAA ATCCTCTTACGTTATTTGCCGGGGATCCCCGTCCGAAAGCATTAAGTTAGAAGGCGTTTAGTCATAATTCATTTT