The Complete HOXA Cluster Sequence of a Primitive Ray-Finned Fish Provides Insights into the Duplication and Evolution of HOX Clusters Within the Bony Fish Lineage
C-H. Chiu, Ken Dewar, Günter P. Wagner, Kazuhiko Takahashi, Frank Ruddle, Christina Ledje, Peter Bartsch, Jean-Luc Scemama, Edmund Stellwag, Claudia Fried, Sonja J. Prohaska, Peter F. Stadler, Chris T. Amemiya


Supplement 6e: Danio rerio Ab

PFC 5'-3' Number of PF, N Coordinates
(distance to 3' gene)
Sequences
Uptream of 13-d 3 58,337-58,378 (827 nt) CTAGACTGCAACTTTCAACTTGACCTTGGCCTCCAGCCGTGT
13-11pp 6 67,995-68,103 (180 nt) TGTCAATTTCTGCCCTTGGTCACATGACTGGCGCTCTCTGGAATGGATGGAGATGGATCTCCACGTCAGCTCACGT CTCAAAATTTCAGCTCGGCGGATCTGCTTCAAA
11-10-b 1 (n=9nt) 71,322-71,330 (2,244 nt) GGCTGGAAC
11-10-c 1 (n=19nt) 71,450-71,473 (2,116 nt) ATGGCGCACTTTAGATCAATGTCA
11-9-a 10 71,146-71,280 (7,641 nt) GCGCATCCTTTGAGGCTCGATGGAATTTCGCCCTAATTACGGCACATCCCCCCGTTGCTGCAGCAACTCAGTCATA AAACCTGTCTTAGTCTGGAGCATTTGTAGAATTGCAGTGAGGTGCCATAAACCGTCTGA
10-9-b 2 76,764-76,882 (2,025 nt) GTGATTAAGGTAGTTTTATGTTGTTGGGCTCTATTTTATATCCCCGCAACACGAAACTG
10-9-c 1 (n=21nt) 77,065-77,085 (1,724 nt) GCAAGGCCTCGGTTACGATCA
3-2pp 11 90,567-90,778 (271 nt) TGAGGCGTTCCTCTCGGACTTTTTTCGATCAATCACACAGACAGTGGCTTCTTTTGATTAAACCCCAAATTGTCAT TGGACAGAGGTAATCATGTGACAAGCAATACGGTCCAATTTCAACCTTGTCTCCATGAAAGCAATAGTTTAATGGC ACCGCGGTCCCCATACGGCCGTAATCAGCAAAATAGTTTTTTTTAACCCGGCACGATATT