Left base   Right base	Score   E-Value

# 5' STEM 

*	        44	        66	13.60	1.52018

# STEM A

*	         1	       169	47.23	0.000317817
*	        12	       163	25.03	0.0967157
*	        23	       157	24.83	0.102903
*	        25	       156	14.45	1.14827
*	        31	       147	25.34	0.090892
*	        45	       134	16.53	0.726682
*	        48	       133	17.89	0.550384
*	        50	       131	16.22	0.80918
*	        85	       122	15.55	0.898609

# STEM B:

*	         5	        70	16.61	1.04101
*	        17	        54	13.62	1.60283
*	        20	        50	12.25	1.98126
*	        23	        46	29.33	0.0970647


# 3' STEM:

*	         1	        32	4.43	0.254312
*	         2	        31	5.56	0.174194
*	         4	        27	1.31	0.969855
*	         8	        23	0.59	1.55348
*	         9	        22	7.58	0.0846879