Table S11.2. The table shows the comparison of Schizosaccharomyces pombe snoRNAs annotated by snoStrip and available Ribo-seq data. Overlapping reads are given in raw numbers and reads per kilobase million (rpkm). The percentage of maximum entropy (pme) score is calculated by the Rfoot tool.
chr start end snoStrip name original name strand ERR392088 ERR392085 ERR392086
reads rpkm pme reads rpkm pme reads rpkm pme
I 5369837 5369942 CD_10-1 . - 401 1323.74 0.519 3095 871.38 0.459 1790 3879.57 0.436
I 3203316 3203402 CD_11-1 . + 15 60.46 . 0 0.00 . 29 76.74 .
II 902279 902375 CD_15-1 . - 369 1332.30 . 446 137.34 . 198 469.37 .
II 1308229 1308346 CD_16-1 . + 12388 36699.72 0.317 11022 2784.90 0.425 4358 8476.60 0.348
I 2705951 2706040 CD_18-1 . + 101 393.35 . 228 75.73 0.456 72 184.10 .
I 5148471 5148556 CD_19-1 . - 73 297.68 . 736 255.97 0.678 175 468.53 0.376
I 339551 339638 CD_19-2 . - 0 0.00 . 212 72.04 0.648 34 88.94 .
I 3177924 3178029 CD_1-1 . + 36 118.84 . 293 82.49 0.698 72 156.05 .
I 527387 527470 CD_21-1 . + 145 605.53 . 1035 368.64 0.644 371 1017.22 0.684
II 1586872 1586966 CD_21-2 . - 10 36.87 . 24 7.55 . 11 26.63 .
I 3851765 3851842 CD_22-1 . - 86 387.13 . 207 79.47 0.000 208 614.74 0.000
I 5144132 5144208 CD_23-1 . + 0 0.00 . 139 54.07 . 100 299.44 .
III 950556 950637 CD_26-1 . - 0 0.00 . 173 63.14 . 72 202.29 .
I 5387558 5387644 CD_27-1 . + 0 0.00 . 463 159.15 0.546 126 333.42 .
I 1234965 1235044 CD_2-1 . + 52 228.15 . 335 125.36 0.295 41 118.11 .
I 527623 527713 CD_31-1 . + 0 0.00 . 321 105.44 0.449 149 376.76 .
II 3874518 3874599 CD_34-1 . - 0 0.00 . 196 71.53 0.376 20 56.19 .
I 5011277 5011366 CD_36-1 . - 0 0.00 . 205 68.09 . 190 485.83 .
II 1308637 1308746 CD_37-1 . + 856 2722.04 0.304 2288 620.53 0.335 1029 2148.37 0.383
II 3874322 3874411 CD_38-1 . - 48 186.94 . 340 112.93 0.639 30 76.71 .
III 1213659 1213738 CD_39-1 . - 16 70.20 . 0 0.00 . 64 184.36 .
III 1980848 1980927 CD_41-1 . - 290 1272.38 0.520 0 0.00 . 69 198.77 .
I 2627985 2628072 CD_44-1 . - 1088 4334.68 0.480 3094 1051.32 0.582 2247 5877.65 0.620
II 2720645 2720734 CD_46-1 . - 15 58.42 . 137 45.51 . 34 86.94 .
II 1791740 1791821 CD_47-1 . - 73 312.38 . 171 62.41 0.000 42 118.00 .
I 1712995 1713073 CD_47-2 . + 100 444.38 . 1065 403.64 0.471 409 1193.30 0.343
II 1707600 1707684 CD_49-1 . + 0 0.00 . 107 37.66 . 28 75.86 .
I 2440335 2440421 CD_51-1 . + 244 983.42 0.265 39 13.41 . 63 166.71 .
I 4154911 4155005 CD_56-1 . + 243 896.04 . 148 46.54 0.376 47 113.79 .
II 1756125 1756213 CD_5-1 . - 245 965.01 0.617 394 132.36 0.493 129 333.60 .
I 1200393 1200504 CD_61-1 . + 34 106.17 . 664 176.84 0.354 194 397.74 0.408
I 5366220 5366298 CD_68-1 . - 415 1844.17 0.325 2095 794.01 0.192 690 2013.14 0.134
I 1200645 1200732 CD_6-1 . + 791 3151.41 0.420 2000 679.59 0.262 1092 2856.43 0.273
I 2265681 2265837 CD_73-1 . - 483 1073.17 0.127 1798 340.72 0.432 639 932.17 0.427
I 527190 527273 CD_7-1 . + 0 0.00 . 235 83.70 0.386 21 57.58 .
II 4239149 4239245 CD_8-1 . - 227 819.60 0.289 369 113.63 0.505 108 256.02 .
I 1200167 1200256 CD_9-1 . + 275 1071.00 0.198 73 24.25 . 41 104.84 .
I 3394871 3395200 HACA_12-1 . + 6516 6864.87 0.359 42982 3862.12 0.401 20076 13886.78 0.391
III 992436 992600 HACA_13-1 AJ632002 - 71 150.06 . 322 58.04 . 143 198.43 .
I 4154411 4154571 HACA_17-1 . + 655 1418.96 0.353 1381 255.16 0.667 871 1238.85 0.574
II 2641323 2641461 HACA_1-1 . - 368 924.31 0.401 820 175.66 0.540 159 262.20 0.376
II 2447904 2448048 HACA_24-1 AJ632003 - 17 40.92 . 295 60.56 0.731 66 104.30 .
II 2266027 2266169 HACA_27-1 AJ632001 - 367 895.83 0.670 1549 322.48 0.477 946 1516.08 0.494
II 2416511 2416693 HACA_28-1 . - 1336 2544.38 0.382 10774 1750.01 0.478 5178 6474.57 0.464
II 3962691 3962834 HACA_2-1 . + 345 836.24 0.142 1088 224.92 0.607 495 787.75 0.529
II 1917406 1917612 HACA_33-1 AJ632006 + 1736 2920.99 0.295 9264 1329.43 0.471 4865 5374.47 0.512
II 2411179 2411361 HACA_34-1 AJ632004 + 5381 10248.00 0.322 42863 6962.19 0.434 18425 23038.61 0.464
II 884165 884332 HACA_3-1 AJ632000 - 7310 15172.19 0.328 7796 1380.03 0.447 3618 4930.29 0.463
II 1957286 1957448 HACA_43-1 AJ632005 - 78 166.89 . 240 43.80 0.564 140 196.67 .
I 170709 170856 HACA_45-1 AJ632015 + 0 0.00 . 0 0.00 . 0 0.00 .
I 4937238 4937394 HACA_46-1 AJ632008 - 11155 24785.20 0.410 15729 2980.65 0.415 7050 10284.54 0.375
II 3172781 3172923 HACA_47-1 AJ632011 + 1434 3500.32 0.189 1404 292.29 0.195 560 897.47 0.081
II 2121215 2121358 HACA_48-1 AJ632010 + 220 533.25 0.387 3473 717.97 0.396 1356 2157.96 0.222
I 2789709 2789981 HACA_49-1 AJ632019 + 0 0.00 . 83 9.02 . 0 0.00 .
I 3316466 3316609 HACA_50-1 AJ632009 - 582 1410.70 0.477 3103 641.48 0.601 1057 1682.13 0.548
III 583416 583605 HACA_51-1 AJ632017 + 378 693.23 0.695 2126 332.53 0.689 1267 1525.58 0.700
I 2330436 2330647 HACA_53-1 AJ632016 - 103 169.20 . 551 77.20 0.432 196 211.39 0.505
III 923877 924085 HACA_54-1 AJ632012 + 1031 1718.08 0.181 2348 333.71 0.242 1352 1479.22 0.169
II 1468185 1468406 HACA_55-1 AJ632013 - 178 279.17 0.505 251 33.57 0.887 105 108.12 .
I 1451227 1451437 HACA_56-1 AJ632014 - 33 54.47 . 0 0.00 . 68 73.69 .
III 926481 926642 HACA_8-1 . - 3604 7759.01 0.347 3824 702.14 0.391 2566 3627.03 0.437
II 3393615 3393800 HACA_9-1 . + 0 0.00 . 526 84.05 0.675 161 198.05 0.505