Table S15: Box C/D snoRNA families that share conserved D' targets as well as D box associated
targets. Again, target information and conservation of predicted target interactions is shown for
both target sites. Experimental verification of target interactions is shown in the 'verified' column.
| original name |
# sequences |
box |
aln pos |
sce pos |
ICI_sno |
mean mfe |
conservation |
verified |
snoStrip name |
| Nc_CD_17 |
50 |
D |
25S-4138 |
25S-2917 |
0,95 |
-17,08 |
Can,11 |
+ |
CD_17 |
| D' |
18S-174 |
18S-157 |
0,63 |
-17,516 |
12,13,15 |
+ |
| Nc_CD_29 |
5 |
D |
5.8S-44 |
5.8S-42 |
2,01 |
-24,66 |
Glo,Neu |
+ |
CD_29 |
| D' |
U2-49 |
U2-27 |
1,67 |
-17,220 |
Glo,Neu |
+ |
| Nc_CD_32 |
5 |
D |
18S-187 |
18S-170 |
0,73 |
-14,30 |
Neu |
+ |
CD_32 |
| D' |
18S-181 |
18S-164 |
1,32 |
-14,350 |
Sor |
+ |
| AM921920 |
29 |
D |
5.8S-77 |
5.8S-74 |
1,37 |
-17,35 |
12,13,Neu |
- |
CD_35 |
| D' |
U2-49 |
U2-27 |
1,20 |
-15,000 |
12,13,Neu |
- |
| Nc_CD_45 |
3 |
D |
18S-1843 |
18S-1639 |
1,96 |
-24,10 |
Neu |
+ |
CD_45 |
| D' |
18S-1401 |
18S-1272 |
1,47 |
-16,80 |
Neu |
- |
| snR47 |
34 |
D |
25S-3403 |
25S-2220 |
1,52 |
-15,65 |
Sai,10 |
+ |
CD_67 |
| D' |
18S-672 |
18S-619 |
1,32 |
-15,268 |
Puc,10 |
+ |
Conservation of target interactions: 1) Fungi 2) Microsporidia 3) Mucoromycotina 4) Chytridiomycota 5) Blastocladiomycota
6) Dikarya 7) Basidiomycota 8) Asomycota 9) Taphrinomycotina 10) Saccharomycotina 11) Pezizomycotina 12) Dothideomycetes
13) Eurotiomycetes 14) Leotiomycetes 15) Sordariomycetes Puc) Pucciniomycotina Sai) Saitoella complicata Sacch) Saccharomycetaceae
Can) Candida Glo) Glomerellales Sor) Sordariales Neu) Neurospora
3..6) equals 3,4,5,6 6-15) equals 6 without 15