Table S11.3. The table shows the comparison of Candida albicans snoRNAs annotated by snoStrip and available Ribo-seq data. Overlapping reads are given in raw numbers and reads per kilobase million (rpkm). The percentage of maximum entropy (pme) score is calculated by the Rfoot tool.
chr start end snoStrip name original name strand SRR1027796 SRR1027794 SRR1027795
reads rpkm pme reads rpkm pme reads rpkm pme
chr1A 2839359 2839466 CD_10-1 snR87 - 4986 91.51 0.650 40 828.85 . 7547 542.51 0.693
chr4A 326781 326874 CD_12-1 snR76 - 5110 107.91 0.304 0 0.00 . 2146 177.49 0.344
chr1A 790699 790789 CD_13-1 . + 30403 663.43 . 0 0.00 . 616 52.65 .
chrRA 1771804 1771898 CD_14-1 snR65 + 932 19.47 0.819 0 0.00 . 69 5.65 .
chr5A 777867 777952 CD_17-1 . + 2278 52.63 . 0 0.00 . 40 3.62 .
chr4A 549280 549370 CD_18-1 snR79 - 1981 43.23 0.541 0 0.00 . 203 17.35 0.251
chr2A 1141192 1141263 CD_19-1 snR56 + 22499 622.33 0.519 103 3216.45 . 2620 283.83 0.589
chr3A 1714935 1715033 CD_19-2 snR52 - 16875 338.17 0.457 41 927.59 . 1755 137.74 0.594
chrRA 2227002 2227090 CD_1-1 snR13 + 72043 1607.78 0.298 279 7029.43 0.773 10186 890.31 0.377
chr4A 326279 326366 CD_21-1 snR74 - 19828 447.59 0.440 105 2675.89 . 7374 651.93 0.455
chr1A 2346879 2346970 CD_22-1 . + 137 2.96 0.792 25 609.11 . 360 30.43 .
chr3A 1366984 1367069 CD_23-1 . + 14234 328.87 0.370 251 6547.16 0.295 50507 4570.38 0.282
chr4A 327040 327131 CD_24-1 snR77 - 38558 832.13 0.417 109 2655.73 . 6318 534.02 0.286
chr1A 1729194 1729289 CD_26-1 snR67 - 2166 44.78 0.621 0 0.00 . 113 9.15 .
chrRA 516604 516697 CD_27-1 snR71 + 47610 1005.39 0.240 163 3886.00 0.505 7928 655.69 0.271
chr5A 265447 265551 CD_27-2 . - 2790 52.69 0.504 0 0.00 . 251 18.56 0.648
chrRA 1424403 1424544 CD_2-1 snR66 + 1833 25.53 0.606 182 2861.88 0.648 419 22.86 0.575
chr4A 326017 326131 CD_31-1 snR73 - 26200 451.35 0.425 80 1555.91 . 4492 303.08 0.651
chr2A 1111763 1111920 CD_33-1 snR63 - 2045 25.58 0.541 0 0.00 . 53 2.60 .
chrRA 1324506 1324596 CD_34-1 snR55 - 2117 46.20 0.753 80 1970.82 . 469 40.08 0.334
chr1A 2454510 2454603 CD_36-1 snR64 - 927 19.58 0.673 0 0.00 . 368 30.44 0.704
chr1A 1952994 1953113 CD_37-1 snR128 + 4573 75.47 0.731 80 1490.53 . 990 63.99 0.747
chrRA 1324300 1324394 CD_38-1 snR61 - 2423 50.62 0.709 40 943.48 . 721 59.00 0.703
chr2A 1092435 1092518 CD_39-1 CD39 - 2830 66.96 0.086 25 667.82 . 2163 200.45 0.153
chr5A 776830 776914 CD_43-1 snR40 + 4540 106.14 0.680 40 1055.79 . 1292 118.30 0.696
chr4A 963416 963514 CD_46-1 snR18 - 11802 236.51 0.350 0 0.00 . 2685 210.74 0.386
chr1A 1195967 1196052 CD_47-1 snR39b + 718 16.59 0.741 40 1043.37 . 275 24.88 0.806
chr2A 1303553 1303643 CD_49-1 snR54 - 1384 30.20 0.539 0 0.00 . 339 28.97 0.514
chr7A 258489 258583 CD_51-1 snR24 + 596 12.45 0.531 80 1886.95 . 393 32.16 0.613
chr5A 265447 265551 CD_56-1 snR69 - 2790 52.69 0.504 0 0.00 . 251 18.56 0.648
chr2A 1304898 1305003 CD_58-1 snR50 - 431 8.06 0.784 0 0.00 . 29 2.12 .
chr1A 1166561 1166662 CD_5-1 snR78 - 1438 27.96 0.461 0 0.00 . 338 25.74 0.704
chr4A 327288 327384 CD_5-2 snR60 - 2723 55.71 0.693 79 1824.54 . 862 69.06 0.463
chr4A 325365 325476 CD_5-3 . - 762 13.48 0.380 40 798.98 . 338 23.42 0.482
chr1A 2831179 2831337 CD_61-1 . + 4780 59.41 0.492 105 1473.43 . 1820 88.60 0.441
chrRA 1324723 1324811 CD_63-1 snR57 - 3848 85.88 0.480 40 1007.80 . 347 30.33 0.496
chr2A 1953991 1954109 CD_65-1 snR68 - 2737 45.55 0.289 0 0.00 . 412 26.86 0.569
chr2A 2216246 2216340 CD_67-1 snR47 + 34709 725.16 0.358 181 4269.23 0.547 41896 3428.19 0.267
chr6A 497875 497962 CD_68-1 snR58 + 985 22.23 0.355 0 0.00 . 156 13.79 0.648
chr6A 498184 498278 CD_69-1 LSU-C2809 + 750 15.67 0.640 20 471.74 . 397 32.48 0.681
chr1A 2831515 2831596 CD_6-1 . + 2298 55.72 0.685 54 1478.11 . 653 62.01 0.915
chr6A 24720 24806 CD_71-1 LSU-G1431 - 1943 44.37 0.449 0 0.00 . 545 48.74 0.501
chr1A 1952460 1952640 CD_72-1 LSU-G364 + 29095 317.44 0.530 410 5050.21 0.620 30689 1311.38 0.309
chr2A 2179520 2179686 CD_73-1 . + 50465 597.04 0.338 80 1068.51 . 3192 147.90 0.424
chr4A 326530 326626 CD_7-1 snR75 - 6819 139.50 0.380 126 2910.03 . 755 60.49 0.594
chr2A 407520 407625 CD_8-1 snR48 + 4882 91.31 0.506 80 1689.27 . 696 50.98 0.628
chr1A 2830896 2830992 CD_9-1 . + 83780 1713.91 0.250 38 877.63 . 55833 4473.42 0.276
chr2A 833832 834031 HACA_11-1 . + 9281 91.59 0.568 81 902.46 . 7891 305.00 0.434
chrRA 403802 404023 HACA_12-1 . - 22116 196.53 0.436 122 1223.96 . 12869 447.89 0.445
chr1A 2960461 2960755 HACA_13-1 . - 25934 173.24 0.809 640 4826.49 0.696 10812 282.86 0.694
chr1A 751817 751972 HACA_1-1 . - 3595 45.55 0.684 88 1258.78 . 1741 86.39 0.532
chr5A 223150 223319 HACA_21-1 . + 17580 204.29 0.465 0 0.00 . 10763 489.85 0.429
chr1A 1334271 1334478 HACA_27-1 . + 8618 81.76 0.359 0 0.00 . 3217 119.54 0.529
chrRA 1830426 1830631 HACA_28-1 . + 2481 23.77 0.587 0 0.00 . 2106 79.02 0.546
chrRA 775020 775168 HACA_29-1 . - 3079 40.86 0.449 31 464.41 . 2511 130.50 0.378
chr1A 2217493 2217868 HACA_33-1 . + 40767 213.50 0.479 103 608.98 0.000 14379 294.93 0.526
chrRA 1164530 1164715 HACA_34-1 . - 5541 58.82 0.634 65 779.00 . 5573 231.71 0.570
chrRA 807850 808032 HACA_35-1 . - 5199 56.10 0.535 116 1413.14 . 19872 839.83 0.339
chr3A 458681 458853 HACA_37-1 . + 47813 545.93 0.210 167 2152.71 0.000 120394 5383.89 0.162
chr2A 204369 204630 HACA_3-1 . - 11406 85.82 0.493 105 891.96 . 203289 5990.91 0.260
chr6A 773918 774252 HACA_42-1 . + 2424 14.25 0.630 114 756.76 0.376 1003 23.10 0.642
chr4A 1381714 1381898 HACA_43-1 . - 9109 97.22 0.634 0 0.00 . 5274 220.47 0.534
chr1A 3120599 3120892 HACA_44-1 . - 12551 84.13 0.801 138 1044.26 . 14086 369.78 0.683
chr3A 1037159 1037342 HACA_48-1 . + 7820 83.92 0.462 0 0.00 . 3166 133.07 0.552
chr1A 1457058 1457198 HACA_54-1 . + 6167 86.51 0.468 28 443.43 . 1903 104.55 0.462
chr1A 2105727 2105897 HACA_6-1 . - 11655 134.64 0.580 27 352.14 . 15106 683.47 0.329
chr1A 1570907 1571057 HACA_9-1 . + 15919 208.42 0.497 40 591.24 . 2951 151.32 0.547