Table S20: Summary of box H/ACA snoRNA families that exhibit a lineage specific
target at their 'non-functional' hairpin. Precise target information such as alignment and
single sequence position, ICI scores, number of detected
interactions (\#ia) and mean minimum free interaction energies are
shown for both hairpins. Experimental verification of target
interactions is shown in the column 'verified'. In case the
annotated target shows not the highest ICI scores, the best
predictions and the verified targets are denoted.
| original name |
# sequences |
hairpin |
aln position |
sce position |
conservation |
ICI_sno |
# interactions |
mean mfe |
verified |
snoStrip name |
| snR44 |
109 |
HP1 |
18S-116 |
18S-106 |
3,6 |
1.27 |
87 |
-29.82 |
+ |
HACA_1 |
| HP1 |
25S-3615 |
25S-2421 |
10,11-Hyp |
0.82 |
44 |
-27.04 |
- |
| HP2 |
25S-2064 |
25S-1056 |
Scm,10,12,13 |
0.69 |
37 |
-26.45 |
+ |
| snR85 |
100 |
HP1 |
18S-1308 |
18S-1181 |
5,Schiz,Sac,11 |
1.14 |
67 |
-34.93 |
+ |
HACA_17 |
| HP1 |
18S-127 |
18S-117 |
Sac,11 |
0.69 |
50 |
-28.73 |
- |
| HP2 |
U2-52 |
U2-29 |
Ana,13 |
0.43 |
26 |
-33.03 |
- |
| snR35 |
77 |
HP1 |
18S-1318 |
18S-1191 |
7,9,10,15 |
0.94 |
56 |
-37.14 |
+ |
HACA_34 |
| HP2 |
18S-1148 |
18S-1038 |
7,Scm,Met,Pic |
0.25 |
17 |
-33.60 |
- |
| snR46 |
69 |
HP1 |
25S-4084 |
25S-2865 |
10,11-13 |
1.21 |
48 |
-31.72 |
+ |
HACA_35 |
| HP2 |
18S-1318 |
18S-1191 |
11-13 |
0.95 |
28 |
-29.65 |
- |
| Nc_HACA_4 |
89 |
HP1 |
18S-512 |
18S-466 |
6 |
1.13 |
69 |
-37.24 |
+ |
HACA_4 |
| HP2 |
18S-633 |
18S-581-2735 |
Aga,Scm,Pha,11-14 |
0.79 |
52 |
-32.18 |
- |
| HP2 |
25S-3952 |
25S-2735 |
Sac |
1.22 |
5 |
-31.08 |
+ |
| snR191 |
125 |
HP1 |
25S-3443 |
25S-2258 |
5,6 |
0.87 |
63 |
-30.06 |
+ |
HACA_42 |
| HP1 |
5.8S-18 |
5.8S-17 |
3..6 |
0.60 |
62 |
-30.36 |
- |
| HP2 |
U6-85 |
U6-80 |
11-(14,Sor) |
0.26 |
18 |
-39.70 |
- |
| HP2 |
25S-3445 |
25S-2260 |
in several lineages |
0.17 |
13 |
-35.31 |
+ |
| snR32 |
101 |
HP1 |
5.8S-57 |
5.8S-54 |
11 |
0.73 |
36 |
-27.32 |
- |
HACA_21 |
| HP2 |
25S-3374 |
25S-2191 |
10,11 |
1.12 |
59 |
-30.75 |
+ |
| snR34 |
105 |
HP1 |
25S-4045 |
25S-2826 |
10,Ony,Ssl |
0.36 |
21 |
-23.22 |
- |
HACA_28 |
| HP2 |
25S-4099 |
25S-2880 |
3,10,11 |
0.75 |
47 |
-36.22 |
- |