Table S14: Box C/D snoRNAs with a second but lineage specific target in addition to their highly conserved target. Family CD_9, CD_20, and CD_42 are the only ones with an overly conserved D target. All other families share overly conserved D' targets. Again, target specific information are denoted in the corresponding columns for D' or D associated targets. In either case, conservation information are given in column 'conservation' and the corresponding legend is shown on the bottom. More than one potential target is shown in cases where the interactions seem equally plausible.
| original name |
# sequences |
box |
aln position |
sce position |
ICI_sno |
mean mfe |
conservation |
verified |
snoStrip name |
| snR51 |
99 |
D' |
25S-3946 |
25S-2729 |
1.18 |
-16.03 |
8 |
+ |
CD_6 |
| D |
25S-3941 |
25S-2724 |
0.148 |
-15.460 |
12,13 |
- |
| snR87 |
113 |
D' |
18S-479 |
18S-436 |
1.13 |
-13.15 |
3..6 |
+ |
CD_10 |
| D |
25S-2066 |
25S-1058 |
0.399 |
-13.192 |
11 |
+ |
| snR53 |
79 |
D' |
18S-894 |
18S-796 |
0.94 |
-17.34 |
3,6 |
+ |
CD_11 |
| D' |
U6-62 |
U6-59 |
0.89 |
-13.78 |
3,6 |
- |
| D |
25S-1153 |
25S-366 |
0.94 |
-21.122 |
8 |
+ |
| D |
25S-1796 |
25S-807 |
0.48 |
-11.50 |
9,11 |
- |
| snR76 |
116 |
D' |
25S-3380 |
25S-2197 |
1.262 |
-21.67 |
6 |
+ |
CD_12 |
| D |
25S-2747 |
25S-1663 |
0.42 |
-13.59 |
11 |
+ |
| D |
25S-1901 |
25S-911 |
0.40 |
-11.57 |
Yli,11 |
- |
| D |
25S-3433 |
25S-2248 |
0.37 |
-10.50 |
Aga,11 |
- |
| snR62 |
122 |
D' |
25S-3011 |
25S-1888 |
1.177 |
-18.67 |
3,5,6 |
+ |
CD_22 |
| D |
18S-1001 |
18S-896 |
0.474 |
-18.253 |
11 |
+ |
| snR67 |
135 |
D' |
25S-3836 |
25S-2619 |
0.864 |
-23.03 |
4,6 |
+ |
CD_26 |
| D |
25S-3941 |
25S-2724 |
0.226 |
-15.336 |
10 |
+ |
| Nc_CD_28 |
58 |
D' |
25S-2990 |
25S-1867 |
1.396 |
-19.95 |
15 |
+ |
CD_28 |
| D |
25S-3004 |
25S-1881 |
0.508 |
-18.600 |
Tri,Sor |
+ |
| snR40 |
90 |
D' |
18S-614 |
18S-562 |
1.605 |
-21.69 |
3,6-9 |
+ |
CD_43 |
| D |
25S-1888 |
25S-898 |
0.206 |
-15.631 |
10 |
+ |
| Nc_CD_44 |
67 |
D' |
18S-1359 |
18S-1231 |
1.595 |
-22.28 |
9,11,Can |
+ |
CD_44 |
| D |
25S-1628 |
25S-663 |
0.256 |
-22.700 |
Tri,Nec |
- |
| snR54 |
112 |
D' |
18S-1083 |
18S-974 |
1.566 |
-18.64 |
6 |
+ |
CD_49 |
| D |
25S-3941 |
25S-2724 |
0.065 |
-14.140 |
Sor |
+ |
| U24 |
162 |
D' |
25S-2508 |
25S-1449 |
1.13 |
-16.28 |
3..6 |
+ |
CD_51 |
| D |
25S-2494 |
25S-1437 |
0.57 |
-21.60 |
3,7,9,10 |
+ |
| snR41 |
119 |
D' |
18S-593 |
18S-541 |
0.40 |
-17.00 |
Puc,10 |
+ |
CD_9 |
| D |
18S-1250 |
18S-1126 |
2.19 |
-24.41 |
3,6 |
+ |
| Nc_CD_20 |
54 |
D' |
18S-1408 |
18S-1279 |
0.82 |
-22.11 |
14,15 |
- |
CD_20 |
| D' |
18S-715 |
18S-653 |
0.43 |
-12.42 |
14,15 |
- |
| D' |
18S-1609 |
18S-1456 |
0.40 |
-10.87 |
14,15 |
- |
| D |
25S-3604 |
25S-2410 |
0.83 |
-22.06 |
11 |
+ |
| AM921923 |
60 |
D' |
5.8S-44 |
5.8S-42 |
0.93 |
-23.4 |
12..14 |
- |
CD_42 |
| D |
25S-2979 |
25S-1856 |
1.26 |
-22.91 |
11 |
- |
Conservation of target interactions: 1) Fungi 2) Microsporidia 3) Mucoromycotina 4) Chytridiomycota 5) Blastocladiomycota
6) Dikarya 7) Basidiomycota 8) Asomycota 9) Taphrinomycotina 10) Saccharomycotina 11) Pezizomycotina 12) Dothideomycetes
13) Eurotiomycetes 14) Leotiomycetes 15) Sordariomycetes Aga) Agaricomycetes Puc) Pucciniomycotina Yli) Yarrowia lipolytica Sacch) Saccharomycetaceae Can) Candida Tri) Trichoderme N