CLUSTAL W (1.83) multiple sequence alignment mpo_U3.1_supercont1.6_88390,8867 GTCGACAATACTTCA------------------------------ mgi_U3.1_Supercontig_6.24_24340, GTCGATCTTACTTCAAA---GTGAGTCTCCCATACACAGCCTCTT mor_U3.1_adopted_3_2971155,29714 GTCGATCTTACTTCAAA---GTGAGTCTCCCATACACAGCCTCTT opi_U3.3_scaffold_10_248590,2489 GTCGACAATACTTCA------------------------------ opi_U3.1_scaffold_07_346298,3466 GTCGACAATACTTCA------------------------------ opi_U3.2_scaffold_13_777488,7778 GTCGACAATACTTCA------------------------------ cpr_U3.1_scaffold_4_4573575,4573 GTCGAC-ATACTCTA------------------------------ pan_U3.2_chromosome_5_2959505,29 GTCGACAATACTTCA------------------------------ tte_U3.2_chromosome_3_423167,423 TGCGACAATACTTCA------------------------------ tte_U3.1_chromosome_6_245316,245 TGCGACAATACTTCA------------------------------ ndi_U3.3_scaffold_7_997991,99825 GTCGACAATACTTCA-----GTAAGCCCCCCTCCTACATTGAAAC ncr_U3.3_Supercontig_12.1_519200 GTCGACAATACTTCA-----GTAAGCCCCCCCCTACCT-TGAGAT nte_U3.3_scaffold_81_4699595,469 GTCGACAATACTTCA-----GTAAGCCCCCCCCTACCTATGAGAC mth_U3.2_chromosome_7_399422,399 GTCGACAATACTTCA------------------------------ pan_U3.1_chromosome_1_5861063,58 GTCGACAATACTTCA------------------------------ pan_U3.3_chromosome_6_198157,198 GTCGACAATACTTCA------------------------------ cgl_U3.1_Supercontig_1.1_304529, GTCGACAATACTTCA------------------------------ cgl_U3.2_Supercontig_1.5_4455721 GTCGACAATACTTCA------------------------------ mth_U3.1_chromosome_5_4134858,41 AGCGACAATACTTCA------------------------------ tar_U3.1_scaffold_41_24194,24462 GTCGACAATACTTCA------------------------------ ndi_U3.1_scaffold_4_320040,32031 GTCGACAATACTTCA-----GTGAGTCCACCCCCC---CTACTAT ndi_U3.2_scaffold_10_249805,2500 GTCGACAATACTTCA-----GTGAGTACCCCCCCTACTATTGGGA ncr_U3.2_Supercontig_12.2_383607 GTCGACAATACTTCA-----GTGAGTACCCCCCTACTATTGGGCT nte_U3.2_scaffold_4_535351,53562 GTCGACAATACTTCA-----GTGAGTACCCCCCTAACTACTATTG ncr_U3.1_Supercontig_12.1_934495 GTCGACAATACTTCA-----GTGAGTCTACCCCCCTACTATTAGG nte_U3.1_scaffold_32_2878,3147_- GTCGACAATACTTCA-----GTGAGTTTACCCCCCTACTATTGGG tvi_U3.1_adopted_91_1724878,1725 GTCGACAATACTTCA-----GTAAGTGCACCCCTAACTGATGGAT tre_U3.1_GL985066_934413,934691_ GTCGACAATACTTCA-----GTATGTGCACCCCTAACTGCTGGCT tre_U3.2_GL985057_45210,45477_-_ GTCGACAATACTTCA-----GTATGTGCACCCCTAAGCTTGGCCT tat_U3.2_contig_26_2105290,21055 GTCGACAATACTTCA-----GTATGTGCCACCCCTACCTGCAGCA tvi_U3.3_adopted_6_1230147,12304 GTCGACAATACTTCA-----GTATGTGCACCCCTAACTGTGATTG tre_U3.3_GL985090_19413,19679___ GTCGACAATACTTCA-----GTATGTGCACCCCCAACTGCTCGCC tvi_U3.2_adopted_91_852020,85229 GTCGACAATACTTCA-----GTATGTGCACCCCCAACTGTGCGAT tat_U3.3_contig_12_192229,192492 GTCGACAATACTTCA-----GTATGTGCACCCCCAGCTTTTGGCC tat_U3.1_contig_22_919089,919362 GTCGACAATACTTCA-----GTATGTGTACCCCTAACTGTGGCCT cmt_U3.1_scaffold_00002_756556,7 GTCGACAATACTTCA-----GTATGTCTCCCCCTACCTTCTCAAC fgr_U3.2_adopted_3_5416089,54163 GTCGACAATACTTCA------------------------------ fve_U3.1_adopted_4_3439796,34400 GTCGACAATACTTCA------------------------------ fox_U3.1_adopted_12_659471,65974 GTCGACAATACTTCA------------------------------ nha_U3.2_adopted_7_924835,925104 GTCGACAATACTTCA------------------------------ fgr_U3.1_adopted_1_5358155,53584 GTCGACAATACTTCA------------------------------ fve_U3.2_adopted_1_837631,837906 GTCGACAATACTTCA------------------------------ fox_U3.2_adopted_1_793773,794045 GTCGACAATACTTCA------------------------------ fgr_U3.3_adopted_2_5912849,59131 GTCGACAATACTTCA------------------------------ fve_U3.3_adopted_11_395602,39587 GTCGACAATACTTCA-----GTACGTCCCCCCTACCTACTACCAC fox_U3.3_adopted_13_1543981,1544 GTCGACAATACTTCA-----GTATGTCCCCCCCTACCTACCATCA nha_U3.1_adopted_1_516432,516701 GTCGACAATACTTCA-----GTAAGTCTACCCCTACAGTAGCACT nha_U3.3_adopted_11_639971,64023 GTCGACAATACTTCA-----GTAAGCCTACCCCTACTGGTAGCCT vda_U3.1_Supercontig_1.11_81432, GTCGACAATACTTCA-----GTACGCCGCCCCCTATAGCTGTCTT val_U3.2_Supercontig_10_753475,7 GTCGACAATACTTCA-----GTACGCCGCCCCCCTACAGCTAGCT val_U3.3_Supercontig_21_51559,51 GTCGACAATACTTCA-----GTAAGCCACCCCCTACCAGGAGCAT vda_U3.3_Supercontig_1.38_72377, GTCGACAATACTTCA-----GTAAGCCACCCCCTAATAGGAGCAC val_U3.1_Supercontig_6_1364667,1 GTCGACAATACTTCA-----GTAAGCCACCCCCTACTAGAAGCAC vda_U3.2_Supercontig_1.15_871054 GTCGACAATACTTCA-----GTAAGCCACCCCCCTACTAGGAGCA aac_U3.1_scaffold_3_1603416,1603 GTCGACAATACTTCA------------------------------ sal_U3.1_scaffold_1_2252300,2252 GTCGACAATACTTCA-----GTAAGCCACCCCCCAACAGGAGCAA aac_U3.2_scaffold_1_1566430,1566 GTCGACAATACTTCA-----GTAAGCCAACCCCCAACTGGAGCAA mpo_U3.1_supercont1.6_88390,8867 --------------------------------------------- mgi_U3.1_Supercontig_6.24_24340, CACCTCTCCAGCCTTTCCAAGCAACACCATCACTAACATCCCATC mor_U3.1_adopted_3_2971155,29714 CACCTCTCCAGCCTTTCCAAGCAACACCATCACTAACATCCCATC opi_U3.3_scaffold_10_248590,2489 --------------------------------------------- opi_U3.1_scaffold_07_346298,3466 --------------------------------------------- opi_U3.2_scaffold_13_777488,7778 --------------------------------------------- cpr_U3.1_scaffold_4_4573575,4573 --------------------------------------------- pan_U3.2_chromosome_5_2959505,29 --------------------------------------------- tte_U3.2_chromosome_3_423167,423 --------------------------------------------- tte_U3.1_chromosome_6_245316,245 --------------------------------------------- ndi_U3.3_scaffold_7_997991,99825 TTAAAAATGTTTTTTTTCGCAGCGCATGACACTAACCACGTTGCA ncr_U3.3_Supercontig_12.1_519200 TTGGGGAGATGCACTCTTTAACGCATGACACTAACCACACCGCAC nte_U3.3_scaffold_81_4699595,469 ATAGGGAGATGCACTCTTCAACGCATGACTCTAACCACACTGCAC mth_U3.2_chromosome_7_399422,399 --------------------------------------------- pan_U3.1_chromosome_1_5861063,58 --------------------------------------------- pan_U3.3_chromosome_6_198157,198 --------------------------------------------- cgl_U3.1_Supercontig_1.1_304529, --------------------------------------------- cgl_U3.2_Supercontig_1.5_4455721 --------------------------------------------- mth_U3.1_chromosome_5_4134858,41 --------------------------------------------- tar_U3.1_scaffold_41_24194,24462 --------------------------------------------- ndi_U3.1_scaffold_4_320040,32031 CAGCATCCGCCCTCCCTCATGGAGATAGATGCAGGGACACTCTTT ndi_U3.2_scaffold_10_249805,2500 TATCATCTCTCTTCTGGAACAAGCATGGATTGCTAACCACACTTC ncr_U3.2_Supercontig_12.2_383607 CTGCTCTCCTCCAGGGAGATCGATGCTCTCTTGGTAACCAACGTA nte_U3.2_scaffold_4_535351,53562 GGCTCTGCTCTCCTCCAGGGAGATCGATGCTCTTTGGCAACGTAC ncr_U3.1_Supercontig_12.1_934495 ATCTGTACCACTGAAAATGTTACTAACCACACCACCCAC------ nte_U3.1_scaffold_32_2878,3147_- ATCTGTACCCCCGAAAATGTTACTAACCACACTGCGCT------- tvi_U3.1_adopted_91_1724878,1725 GTTACTATCGCAGTTGTGCTAACGAATTTCCACAG---------- tre_U3.1_GL985066_934413,934691_ TTCCTCTCCCCCCTCTGCCTTGCCAGCAGCAGCAGCAGCAGCAGC tre_U3.2_GL985057_45210,45477_-_ TTCTGGCTTCTCAGCAGCTGCTAACCATCTTGTTTCTACAG---- tat_U3.2_contig_26_2105290,21055 GCATGCTTCTAGAGCAATCGTCTAACCTTGTTTTCTTTCACAG-- tvi_U3.3_adopted_6_1230147,12304 CCCGCCCTGTCCAAAAACCCGGCTTCTAACGTCTGCTTTTTCTTT tre_U3.3_GL985090_19413,19679___ TCTCGCGCTGCGGAAAACATCTTTGCTAACACACTGGCCAACAG- tvi_U3.2_adopted_91_852020,85229 CCTCCGCACCGCAACAGAGCAGATGTGCTAACAAACCGCCCTACA tat_U3.3_contig_12_192229,192492 CTCTGCAGGCTGGCCGTCGTACTAACCACTTCAACAG-------- tat_U3.1_contig_22_919089,919362 GCAGTGATTTCTCCCATCATTGCGGCCACAGTGGTCAGGATGTTC cmt_U3.1_scaffold_00002_756556,7 AACAGCCTCCTCCTCCAGGCGCTCTCTCTTCACACATCATCTCTC fgr_U3.2_adopted_3_5416089,54163 --------------------------------------------- fve_U3.1_adopted_4_3439796,34400 --------------------------------------------- fox_U3.1_adopted_12_659471,65974 --------------------------------------------- nha_U3.2_adopted_7_924835,925104 --------------------------------------------- fgr_U3.1_adopted_1_5358155,53584 --------------------------------------------- fve_U3.2_adopted_1_837631,837906 --------------------------------------------- fox_U3.2_adopted_1_793773,794045 --------------------------------------------- fgr_U3.3_adopted_2_5912849,59131 --------------------------------------------- fve_U3.3_adopted_11_395602,39587 TCCACCACCAAACGATCGCTAACAACGCCTTCAG----------- fox_U3.3_adopted_13_1543981,1544 CTCTCCCACCAAACGCATACTAACAACGCCTCCAG---------- nha_U3.1_adopted_1_516432,516701 CTCCACTCTGAAGCGCTCTCCAAGCCTGCAAACAACCTTGGCACA nha_U3.3_adopted_11_639971,64023 CCCGATCAACATCCGCTGACGCCTCCCAG---------------- vda_U3.1_Supercontig_1.11_81432, CTCCCAACACAACAGCCACTGACGAAGCGCAG------------- val_U3.2_Supercontig_10_753475,7 GCCTTCTCCGACAGCAGCAGTCGCTAACGAAGCACAG-------- val_U3.3_Supercontig_21_51559,51 CACCAGCGCCTACGCATGACAGCCTCGCAAGACAGCAGCTAACCC vda_U3.3_Supercontig_1.38_72377, CACCTGCGCCCACGCAGGCAACCTCGCAAGACGGCCGCTAACCCA val_U3.1_Supercontig_6_1364667,1 CCAGCACATACGCATGGCAGCGTAGCAAGATGGCCGCTAACCCAT vda_U3.2_Supercontig_1.15_871054 CCACCAGCGCCCGCACACGGTTACCTCGCAAGACAGCCGCTAATC aac_U3.1_scaffold_3_1603416,1603 --------------------------------------------- sal_U3.1_scaffold_1_2252300,2252 TCAACACTTCCACAAACAATCTTTCAGGATTAACAGTTTGCTAAC aac_U3.2_scaffold_1_1566430,1566 TCAACGCAGCAGCCTCCAATCGCAATCTGGATCGCCGAATCGTCA mpo_U3.1_supercont1.6_88390,8867 --------------------------------------------- mgi_U3.1_Supercontig_6.24_24340, TCTTGCAACAG---------------------------------- mor_U3.1_adopted_3_2971155,29714 TCTTGCAACAG---------------------------------- opi_U3.3_scaffold_10_248590,2489 --------------------------------------------- opi_U3.1_scaffold_07_346298,3466 --------------------------------------------- opi_U3.2_scaffold_13_777488,7778 --------------------------------------------- cpr_U3.1_scaffold_4_4573575,4573 --------------------------------------------- pan_U3.2_chromosome_5_2959505,29 --------------------------------------------- tte_U3.2_chromosome_3_423167,423 --------------------------------------------- tte_U3.1_chromosome_6_245316,245 --------------------------------------------- ndi_U3.3_scaffold_7_997991,99825 CT--------------------------------------CTACA ncr_U3.3_Supercontig_12.1_519200 TTT---------------------------------------ACA nte_U3.3_scaffold_81_4699595,469 T---------------------------------------TTACA mth_U3.2_chromosome_7_399422,399 --------------------------------------------- pan_U3.1_chromosome_1_5861063,58 --------------------------------------------- pan_U3.3_chromosome_6_198157,198 --------------------------------------------- cgl_U3.1_Supercontig_1.1_304529, --------------------------------------------- cgl_U3.2_Supercontig_1.5_4455721 --------------------------------------------- mth_U3.1_chromosome_5_4134858,41 --------------------------------------------- tar_U3.1_scaffold_41_24194,24462 --------------------------------------------- ndi_U3.1_scaffold_4_320040,32031 TCCCTCTCCAGAATACCCTTACTAACCACACCACCCACCACAATA ndi_U3.2_scaffold_10_249805,2500 CCCCCCCC--------------------------------CAACA ncr_U3.2_Supercontig_12.2_383607 TGACGCTAACCACATTACCCAC------------------CAACA nte_U3.2_scaffold_4_535351,53562 CTATGACGCTAACCACATTACCCAC---------------CAACA ncr_U3.1_Supercontig_12.1_934495 ----------------------------------------CAACA nte_U3.1_scaffold_32_2878,3147_- ----------------------------------------TCACA tvi_U3.1_adopted_91_1724878,1725 --------------------------------------------- tre_U3.1_GL985066_934413,934691_ ACGAGAATCATTTGCTAACAACCTTTTGCAG-------------- tre_U3.2_GL985057_45210,45477_-_ --------------------------------------------- tat_U3.2_contig_26_2105290,21055 --------------------------------------------- tvi_U3.3_adopted_6_1230147,12304 CTACAG--------------------------------------- tre_U3.3_GL985090_19413,19679___ --------------------------------------------- tvi_U3.2_adopted_91_852020,85229 G-------------------------------------------- tat_U3.3_contig_12_192229,192492 --------------------------------------------- tat_U3.1_contig_22_919089,919362 AAGTGGAATTCAGGATGGCTAACAACTTCAACAG----------- cmt_U3.1_scaffold_00002_756556,7 CGAGCTTCCTTTGCTAACCTCCCCTTCAG---------------- fgr_U3.2_adopted_3_5416089,54163 --------------------------------------------- fve_U3.1_adopted_4_3439796,34400 --------------------------------------------- fox_U3.1_adopted_12_659471,65974 --------------------------------------------- nha_U3.2_adopted_7_924835,925104 --------------------------------------------- fgr_U3.1_adopted_1_5358155,53584 --------------------------------------------- fve_U3.2_adopted_1_837631,837906 --------------------------------------------- fox_U3.2_adopted_1_793773,794045 --------------------------------------------- fgr_U3.3_adopted_2_5912849,59131 --------------------------------------------- fve_U3.3_adopted_11_395602,39587 --------------------------------------------- fox_U3.3_adopted_13_1543981,1544 --------------------------------------------- nha_U3.1_adopted_1_516432,516701 CTTGGAAAAGCACATCAACTTGGCGATCTACACTTTTTGCTTTCC nha_U3.3_adopted_11_639971,64023 --------------------------------------------- vda_U3.1_Supercontig_1.11_81432, --------------------------------------------- val_U3.2_Supercontig_10_753475,7 --------------------------------------------- val_U3.3_Supercontig_21_51559,51 ATTTCTCAG------------------------------------ vda_U3.3_Supercontig_1.38_72377, TCCCTTAG------------------------------------- val_U3.1_Supercontig_6_1364667,1 CCCTCAG-------------------------------------- vda_U3.2_Supercontig_1.15_871054 CCTTCCTCAG----------------------------------- aac_U3.1_scaffold_3_1603416,1603 --------------------------------------------- sal_U3.1_scaffold_1_2252300,2252 ATACTTCCCCCCCTTCTTCAG------------------------ aac_U3.2_scaffold_1_1566430,1566 TTGCTAACATCGTTTCCCCCTTCTCCAG----------------- mpo_U3.1_supercont1.6_88390,8867 -----------------------------------GAGAATCATT mgi_U3.1_Supercontig_6.24_24340, -------------------------------------GAATCATT mor_U3.1_adopted_3_2971155,29714 -------------------------------------GAATCATT opi_U3.3_scaffold_10_248590,2489 -----------------------------------AAGAATCATT opi_U3.1_scaffold_07_346298,3466 -----------------------------------AAGAATCATT opi_U3.2_scaffold_13_777488,7778 -----------------------------------AAGAATCATT cpr_U3.1_scaffold_4_4573575,4573 -----------------------------------GAGAATCATT pan_U3.2_chromosome_5_2959505,29 -----------------------------------GAGAATCATT tte_U3.2_chromosome_3_423167,423 -----------------------------------GAGAATCATT tte_U3.1_chromosome_6_245316,245 -----------------------------------GAGAATCATT ndi_U3.3_scaffold_7_997991,99825 G----------------------------------GAGAATCATT ncr_U3.3_Supercontig_12.1_519200 G----------------------------------GAGAATCATT nte_U3.3_scaffold_81_4699595,469 G----------------------------------GAGAATCATT mth_U3.2_chromosome_7_399422,399 -----------------------------------GAGAATCATT pan_U3.1_chromosome_1_5861063,58 -----------------------------------GAGAATCATT pan_U3.3_chromosome_6_198157,198 -----------------------------------GAGAATCATT cgl_U3.1_Supercontig_1.1_304529, -----------------------------------GAGAATCATT cgl_U3.2_Supercontig_1.5_4455721 -----------------------------------GAGAATCATT mth_U3.1_chromosome_5_4134858,41 -----------------------------------GAGAATCATT tar_U3.1_scaffold_41_24194,24462 -----------------------------------GAGAATCATT ndi_U3.1_scaffold_4_320040,32031 G----------------------------------GAGAATCATT ndi_U3.2_scaffold_10_249805,2500 G----------------------------------GAGAATCATT ncr_U3.2_Supercontig_12.2_383607 G----------------------------------GAGAATCATT nte_U3.2_scaffold_4_535351,53562 G----------------------------------GAGAATCATT ncr_U3.1_Supercontig_12.1_934495 G----------------------------------GAGAATCATT nte_U3.1_scaffold_32_2878,3147_- G----------------------------------GAGAATCATT tvi_U3.1_adopted_91_1724878,1725 -----------------------------------GAGAATCATT tre_U3.1_GL985066_934413,934691_ -----------------------------------GAGAATCATT tre_U3.2_GL985057_45210,45477_-_ -----------------------------------GAGAATCATT tat_U3.2_contig_26_2105290,21055 -----------------------------------GAGAATCATT tvi_U3.3_adopted_6_1230147,12304 -----------------------------------GAGAATCATT tre_U3.3_GL985090_19413,19679___ -----------------------------------GAGAATCATT tvi_U3.2_adopted_91_852020,85229 -----------------------------------GAGAATCATT tat_U3.3_contig_12_192229,192492 -----------------------------------GAGAATCATT tat_U3.1_contig_22_919089,919362 -----------------------------------GAGAATCATT cmt_U3.1_scaffold_00002_756556,7 -----------------------------------GAGAATCATT fgr_U3.2_adopted_3_5416089,54163 -----------------------------------GAGAATCATT fve_U3.1_adopted_4_3439796,34400 -----------------------------------GAGAATCATT fox_U3.1_adopted_12_659471,65974 -----------------------------------GAGAATCATT nha_U3.2_adopted_7_924835,925104 -----------------------------------GAGAATCATT fgr_U3.1_adopted_1_5358155,53584 -----------------------------------GAGAATCATT fve_U3.2_adopted_1_837631,837906 -----------------------------------GAGAATCATT fox_U3.2_adopted_1_793773,794045 -----------------------------------GAGAATCATT fgr_U3.3_adopted_2_5912849,59131 -----------------------------------GAGAATCATT fve_U3.3_adopted_11_395602,39587 -----------------------------------GAGAATCATT fox_U3.3_adopted_13_1543981,1544 -----------------------------------GAGAATCATT nha_U3.1_adopted_1_516432,516701 AATTCAACAGTCTGCTAACCCATCACCCCAG----GAGAATCATT nha_U3.3_adopted_11_639971,64023 -----------------------------------GAGAATCATT vda_U3.1_Supercontig_1.11_81432, -----------------------------------GAGAATCATT val_U3.2_Supercontig_10_753475,7 -----------------------------------GAGAATCATT val_U3.3_Supercontig_21_51559,51 -----------------------------------GAGAATCATT vda_U3.3_Supercontig_1.38_72377, -----------------------------------GAGAATCATT val_U3.1_Supercontig_6_1364667,1 -----------------------------------GAGAATCATT vda_U3.2_Supercontig_1.15_871054 -----------------------------------GAGAATCATT aac_U3.1_scaffold_3_1603416,1603 -----------------------------------GAGAATCATT sal_U3.1_scaffold_1_2252300,2252 -----------------------------------GAGAATCATT aac_U3.2_scaffold_1_1566430,1566 -----------------------------------GAGAATCATT mpo_U3.1_supercont1.6_88390,8867 TCTATAGTATTTGTCCC-ACTTCTTTGTTTCCCAAAGAAGCTTCA mgi_U3.1_Supercontig_6.24_24340, TCTATAGTAATCGACCC-ACTTCTTTGTTTCCCAAAGAAGCTTCA mor_U3.1_adopted_3_2971155,29714 TCTATAGTAATCGACCC-ACTTCTTTGTTTCCCAAAGAAGCTTCA opi_U3.3_scaffold_10_248590,2489 TCTATAGTTATTGTCC--TCTTCTAGGTTCTCAAAAAGAGCCAGA opi_U3.1_scaffold_07_346298,3466 TCTATAGTTATTGTCC--TCTTCTAGGTTCTCAAAAAGAGCCAGA opi_U3.2_scaffold_13_777488,7778 TCTATAGTTATTGTCC--TCTTCTAGGTTCTCAAAAAGAGCCAGA cpr_U3.1_scaffold_4_4573575,4573 TCTATAGGTATCGTCCCATCTTCTATGTTTCCCAACATAGCTACA pan_U3.2_chromosome_5_2959505,29 TCTATAGTAGTCGTCC--TCTTTTGTATTCCCCAAAGGAGCCACA tte_U3.2_chromosome_3_423167,423 TCTATAGTAGTTGTCC--TCTCTTGGTTTCCCTAAAGGAGCCACA tte_U3.1_chromosome_6_245316,245 TCTATAGTAGTTGTCC--TCTCTTGTGTTCCCTAAAGGAGCCACA ndi_U3.3_scaffold_7_997991,99825 TCTATAGTATTTGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA ncr_U3.3_Supercontig_12.1_519200 TCTATAGTATTTGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA nte_U3.3_scaffold_81_4699595,469 TCTATAGTATTTGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA mth_U3.2_chromosome_7_399422,399 TCTATAGTAGTTGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA pan_U3.1_chromosome_1_5861063,58 TCTATAGTAGTCGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA pan_U3.3_chromosome_6_198157,198 TCTATAGTAGTCGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA cgl_U3.1_Supercontig_1.1_304529, TCTATAGTATTCGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA cgl_U3.2_Supercontig_1.5_4455721 TCTATAGTATTCGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA mth_U3.1_chromosome_5_4134858,41 TCTATAGTAGTTGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA tar_U3.1_scaffold_41_24194,24462 TCTATAGTAGTTGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA ndi_U3.1_scaffold_4_320040,32031 TCTATAGTATTTGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA ndi_U3.2_scaffold_10_249805,2500 TCTATAGTATTTGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA ncr_U3.2_Supercontig_12.2_383607 TCTATAGTATTTGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA nte_U3.2_scaffold_4_535351,53562 TCTATAGTATTTGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA ncr_U3.1_Supercontig_12.1_934495 TCTATAGTATTTGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA nte_U3.1_scaffold_32_2878,3147_- TCTATAGTATTTGTCC--TCTTTTGTGTTCCCTAAAGGAGCCACA tvi_U3.1_adopted_91_1724878,1725 TCTATAGTATTCGTCT--CTTGCTTTGGTTCCCAAAAGAGCCATC tre_U3.1_GL985066_934413,934691_ TCTATAGTATTCGTCT--CTCGCTTTGGTTCCCAAAAGAGCCATC tre_U3.2_GL985057_45210,45477_-_ TCTATAGTATTCGTCT--CTCGCTTTGGTTCCCAAAAGAGCCATC tat_U3.2_contig_26_2105290,21055 TCTATAGTATTTGTCT--CTTGCTTTGGTTCCCAAAAGAGCCATC tvi_U3.3_adopted_6_1230147,12304 TCTATAGTATTCGTCT--CTTGCTTTGGTTCCCAAAAGAGCCATC tre_U3.3_GL985090_19413,19679___ TCTATAGTATTCGTCT--CTCGCTTTGGTTCCCAAAAGAGCCATC tvi_U3.2_adopted_91_852020,85229 TCTATAGTATTCGTCT--CTTGCTTTGGTTCCCAAAAGAGCCATC tat_U3.3_contig_12_192229,192492 TCTATAGTATTTGTCT--CTTGCTTTGGTTCCCAAAAGAGCCATC tat_U3.1_contig_22_919089,919362 TCTATAGTATTTGTCT--CTTGCTTTGGTTCCCAAAAGAGCCATC cmt_U3.1_scaffold_00002_756556,7 TCTATAGTAATCGACC--CATTCTTGGTTCCTCAAAAGAGCCACA fgr_U3.2_adopted_3_5416089,54163 TCTATAGTATTCGACC--TTCTCTTGGTTCCCTAAAAGAGCCACA fve_U3.1_adopted_4_3439796,34400 TCTATAGTATTCGACC--TTCTCTTGGTTCCCTAAAAGAGCCACA fox_U3.1_adopted_12_659471,65974 TCTATAGTATTCGACC--TTCTCTTGGTTCCCTAAAAGAGCCACA nha_U3.2_adopted_7_924835,925104 TCTATAGTATTCGACC--TTCTCTTGGTTCTCCAAAAGAGCCACA fgr_U3.1_adopted_1_5358155,53584 TCTATAGTATTCGACC--TTCTCTTGGTTCCCTAAAAGAGCCACA fve_U3.2_adopted_1_837631,837906 TCTATAGTATTCGACC--TTCTCTTGGTTCCCTAAAAGAGCCACA fox_U3.2_adopted_1_793773,794045 TCTATAGTATTCGACC--TTCTCTTGGTTCCCTAAAAGAGCCACA fgr_U3.3_adopted_2_5912849,59131 TCTATAGTATTCGACC--TTCTCTTGGTTCCCTAAAAGAGCCACA fve_U3.3_adopted_11_395602,39587 TCTATAGTATTCGACC--TTCTCTTGGTTCCCTAAAAGAGCCACA fox_U3.3_adopted_13_1543981,1544 TCTATAGTATTCGACC--TTCTCTTGGTTCCCTAAAAGAGCCACA nha_U3.1_adopted_1_516432,516701 TCTATAGTATTCGACC--TTCTCTTGGTTCTCCAAAAGAGCCACA nha_U3.3_adopted_11_639971,64023 TCTATAGTATTCGACC--TTCTCTTGGTTCTCCAAAAGAGCCACA vda_U3.1_Supercontig_1.11_81432, TCTATAGTATTCGACC--TACTCTGGGTTCTCCAAAAGAGCCACA val_U3.2_Supercontig_10_753475,7 TCTATAGTATTCGACC--TACTCTGGGTTCTCCAAAAGAGCCACA val_U3.3_Supercontig_21_51559,51 TCTATAGTATTCGACC--TACTCTGGGTTCTCCAAAAGAGCCACA vda_U3.3_Supercontig_1.38_72377, TCTATAGTATTCGACC--TACTCTGGGTTCTCCAAAAGAGCCACA val_U3.1_Supercontig_6_1364667,1 TCTATAGTATTCGACC--TACTCTGGGTTCTCCAAAAGAGCCACA vda_U3.2_Supercontig_1.15_871054 TCTATAGTATTCGACC--TACTCTGGGTTCTCCAAAAGAGCCACA aac_U3.1_scaffold_3_1603416,1603 TCTATAGTATTCGACC--CACTCTGGGTTCTCCAAAAGAGCCACA sal_U3.1_scaffold_1_2252300,2252 TCTATAGTATTCGACC--CACTCTGGGTTCTCCAAAAGAGCCACA aac_U3.2_scaffold_1_1566430,1566 TCTATAGTATTCGACC--TACTCTGGGTTCTCCAAAAGAGCCACA mpo_U3.1_supercont1.6_88390,8867 G-ATCCCACCCTGGTTGATGACCACAA-ATCCTCG--CCGCCCT- mgi_U3.1_Supercontig_6.24_24340, G-ACCATACCCTGGTTGATGACTT-TT-ATGCTCG--TTGCCCT- mor_U3.1_adopted_3_2971155,29714 G-ACCATACCCTGGTTGATGACTT-TT-ATGCTCG--TTGCCCT- opi_U3.3_scaffold_10_248590,2489 A-ACCCCACCCGGGTTGATGACTTTAT-ATCCTCGACTTGCCCGT opi_U3.1_scaffold_07_346298,3466 A-ACCCCACCCGGGTTGATGACTTTAT-ATCCTCGACTTGCCCGT opi_U3.2_scaffold_13_777488,7778 A-ACCCCACCCGGGTTGATGACTTTAT-ATCCTCGACTTGCCCGT cpr_U3.1_scaffold_4_4573575,4573 G-AACCTACCCTGGACGATGACCACAA-ATCCTCG--ACACCCT- pan_U3.2_chromosome_5_2959505,29 G-ATCCCACCCGGGTTGATGAACG-AT-ATCCTCG--ACACCTAC tte_U3.2_chromosome_3_423167,423 G-ATCCCACCCGGGTTGATGAACG-AT-ATCCTCG--ACGCCCT- tte_U3.1_chromosome_6_245316,245 G-ATCCCACCCGGGTTGATGAACG-AT-ATCCTCG--ATGCCCT- ndi_U3.3_scaffold_7_997991,99825 G-ATCCCACCGCGGTTGATGATCA-AT-ATCCTCG--GCGCCCA- ncr_U3.3_Supercontig_12.1_519200 G-ATCCCACCGCGGTTGATGATCA-AT-ATCCTCG--GCGCCCA- nte_U3.3_scaffold_81_4699595,469 G-ATCCCACCGCGGTTGATGATCA-AT-ATCCTCG--GCGCCCA- mth_U3.2_chromosome_7_399422,399 G-ATCCCACCCGGGTTGATGAACG-AT-ATCCTCG--GCACCCT- pan_U3.1_chromosome_1_5861063,58 G-ATCCCACCCGGGTTGATGAACG-AT-ATCCTCG--GTGCCCA- pan_U3.3_chromosome_6_198157,198 G-ATCCCACCCGGGTTGATGAACG-AT-ATCCTCG--GCGCCCA- cgl_U3.1_Supercontig_1.1_304529, G-ATCCCACCCGGGTTGATGAACA-AT-ATCCTCG--GCACCCC- cgl_U3.2_Supercontig_1.5_4455721 G-ATCCCACCCGGGTTGATGAACG-AT-ATCCTCG--GCACCCT- mth_U3.1_chromosome_5_4134858,41 G-ATCCCACCCGGGTTGATGATCG-AT-ATCCTCG--GCACCCT- tar_U3.1_scaffold_41_24194,24462 G-ATCCCACCCGGGTTGATGATCA-AT-ATCCTCG--GCACCCT- ndi_U3.1_scaffold_4_320040,32031 G-ATCCCACCCAGGTTGATGACCT-AT-ATCCTCG--TTTCCCA- ndi_U3.2_scaffold_10_249805,2500 G-ATCCCACCCGGGATGATGATGG-AT-ATCCTCG--GTTCCCA- ncr_U3.2_Supercontig_12.2_383607 G-ATCCCACCCGGGATGATGAACT-AT-ATCCTCG--TTTCCCA- nte_U3.2_scaffold_4_535351,53562 G-ATCCCACCCGGGTTGATGAATT-AT-ATCCTCG--TTTCCCA- ncr_U3.1_Supercontig_12.1_934495 G-ATCCCACCCGGGTTGATGAACT-AT-ATCCTCG--TTTCCCA- nte_U3.1_scaffold_32_2878,3147_- G-ATCCCACCCGGGTTGATGAACT-AT-ATCCTCG--TTTCCCA- tvi_U3.1_adopted_91_1724878,1725 G-AATCCACCCTGGTTGATGACTGTAT-ATCCTCG--ACATCCA- tre_U3.1_GL985066_934413,934691_ G-AATCCACCCTGGTTGATGATTGTAC-ATCCTCG--ATACCCA- tre_U3.2_GL985057_45210,45477_-_ G-AATCCACCCTGGTTGATGATTGCAT-ATCCTCA--GCACCCA- tat_U3.2_contig_26_2105290,21055 G-AATCCACCCTGGTTGATGATTGTAT-ATCCTCG--ACACCCA- tvi_U3.3_adopted_6_1230147,12304 G-AATCCACCCTGGTTGATGATTGTAT-ATCCTCA--GCACCCA- tre_U3.3_GL985090_19413,19679___ G-AATCCACCCTGGTTGATGATTGCAT-ATCCTCG--GCATCCA- tvi_U3.2_adopted_91_852020,85229 G-AATCCACCCTGGTTGATGATTGTAT-ATCCTCG--ATGCCCA- tat_U3.3_contig_12_192229,192492 G-AATCCACCCTGGTTGATGATTGCAT-ATCCTCG--ACATCCA- tat_U3.1_contig_22_919089,919362 G-AATCCACCCTGGTTGATGATTGCAT-ATCCTCG--ATACCCA- cmt_U3.1_scaffold_00002_756556,7 GAAATCCACCCTGGTTGATGATTGCAT-ATCCTCG--ACACCCT- fgr_U3.2_adopted_3_5416089,54163 G-ATCCCACCCTGGTTGATGAATGAAT-ATCCTCG--ATGCCCT- fve_U3.1_adopted_4_3439796,34400 G-ATCCCACCCTGGTTGATGAATGAAT-ATCCTCG--ATGCCCT- fox_U3.1_adopted_12_659471,65974 G-ATCCCACCCTGGTTGATGAATGAAT-ATCCTCG--ATGCCCT- nha_U3.2_adopted_7_924835,925104 G-ATCCCACCCTGGTTGATGAATGTAT-ATCCTCA--ACACCCT- fgr_U3.1_adopted_1_5358155,53584 G-ATCCCACCCTGGTTGATGAGTGTAT-ATCCTCG--ACACCCT- fve_U3.2_adopted_1_837631,837906 G-ATCCCACCCTGGTTGATGAGTGCAT-ATCCTCG--ACACCCT- fox_U3.2_adopted_1_793773,794045 G-ATCCCACCCTGGTTGATGAGTGCAT-ATCCTCG--ACACCCT- fgr_U3.3_adopted_2_5912849,59131 G-ATCCCACCCTGGTTGATGAGTGTAT-ATCCTCG--ACACCCT- fve_U3.3_adopted_11_395602,39587 G-ATCCCACCCTGGTTGATGAATGTAT-ATCCTCG--ACACCCT- fox_U3.3_adopted_13_1543981,1544 G-ATCCCACCCTGGTTGATGAATGTAT-ATCCTCG--ACACCCT- nha_U3.1_adopted_1_516432,516701 G-ATCCCACCCTGGTTGATGAGTGCAT-ATCCTCG--ACACCCT- nha_U3.3_adopted_11_639971,64023 G-ATCCCACCCTGGTTGATGAGTGCAT-ATCCTCG--ACACCCT- vda_U3.1_Supercontig_1.11_81432, G-ATCCCACCCTGGTTGATGA-TGCAT-ATCCTCG--ACACCCT- val_U3.2_Supercontig_10_753475,7 G-ATCCCACCCTGGTTGATGA-TGTAT-ATCCTCG--ACACCCT- val_U3.3_Supercontig_21_51559,51 G-ATCCCACCCTGGTTGATGATTG-AT-ATCCTCG--GCACCCT- vda_U3.3_Supercontig_1.38_72377, G-ATCCCACCCTGGTTGATGATTG-AT-ATCCTCG--GCACCCT- val_U3.1_Supercontig_6_1364667,1 G-ATCCCACCCTGGTTGATGATTG-AT-ATCCTCG--ACACCCT- vda_U3.2_Supercontig_1.15_871054 G-ATCCCACCCTGGTTGATGATTG-AT-ATCCTCG--ACACCCT- aac_U3.1_scaffold_3_1603416,1603 G-ATCCCACCCTGGTTGATGAGGG-AT-ATCCTCG--GCACCTA- sal_U3.1_scaffold_1_2252300,2252 G-ATCCCACCCTGGTTGATGATAG-AT-ATCCTCG--GCACCCT- aac_U3.2_scaffold_1_1566430,1566 G-ATCCCACCCTGGTTGATGAGAC-AT-ATCCTCG--GCATCCT- mpo_U3.1_supercont1.6_88390,8867 CGAGT------------------------------------GAAT mgi_U3.1_Supercontig_6.24_24340, AGGGT------------------------------------GAAA mor_U3.1_adopted_3_2971155,29714 AGGGT------------------------------------GAAA opi_U3.3_scaffold_10_248590,2489 TTTTACGAAAAC-TTAGCTGCGCTTTTGCCGGCGTGCTTTGGGGT opi_U3.1_scaffold_07_346298,3466 TTTTACGAAAACTTTAGCTGCGCTTTTGCCGGCGTGCTTTGGGGT opi_U3.2_scaffold_13_777488,7778 TTTTACGAAAACTTTAGCTGCGCTTTTGCCGGCGTGCTTTGGGGT cpr_U3.1_scaffold_4_4573575,4573 AGGGT------------------------------------GAAA pan_U3.2_chromosome_5_2959505,29 ACAAT------------------------------------GAGG tte_U3.2_chromosome_3_423167,423 TCAGT------------------------------------GAGG tte_U3.1_chromosome_6_245316,245 ACTGT------------------------------------GAGG ndi_U3.3_scaffold_7_997991,99825 ACAGT------------------------------------GAGG ncr_U3.3_Supercontig_12.1_519200 ACAGT------------------------------------GAGG nte_U3.3_scaffold_81_4699595,469 ACAGT------------------------------------GAGG mth_U3.2_chromosome_7_399422,399 ACAGT------------------------------------GAGA pan_U3.1_chromosome_1_5861063,58 ACAGT------------------------------------GAGA pan_U3.3_chromosome_6_198157,198 ACAGT------------------------------------GAGG cgl_U3.1_Supercontig_1.1_304529, ACAGT------------------------------------GAGA cgl_U3.2_Supercontig_1.5_4455721 ACAGT------------------------------------GAGA mth_U3.1_chromosome_5_4134858,41 ACAGT------------------------------------GAGG tar_U3.1_scaffold_41_24194,24462 ACAGT------------------------------------GAGG ndi_U3.1_scaffold_4_320040,32031 ACAGT------------------------------------GAGG ndi_U3.2_scaffold_10_249805,2500 ACAGT------------------------------------GAGG ncr_U3.2_Supercontig_12.2_383607 ACAGT------------------------------------GAGG nte_U3.2_scaffold_4_535351,53562 ACAGT------------------------------------GAGG ncr_U3.1_Supercontig_12.1_934495 ACAGT------------------------------------GAGG nte_U3.1_scaffold_32_2878,3147_- ACAGT------------------------------------GAGG tvi_U3.1_adopted_91_1724878,1725 AGAGT------------------------------------GAAT tre_U3.1_GL985066_934413,934691_ AGAGT------------------------------------GAAT tre_U3.2_GL985057_45210,45477_-_ AGAGT------------------------------------GAAT tat_U3.2_contig_26_2105290,21055 AGAGT------------------------------------GAAT tvi_U3.3_adopted_6_1230147,12304 AGAGT------------------------------------GAAA tre_U3.3_GL985090_19413,19679___ AGAGT------------------------------------GAAT tvi_U3.2_adopted_91_852020,85229 AGAGT------------------------------------GAAT tat_U3.3_contig_12_192229,192492 AGAGT------------------------------------GAAT tat_U3.1_contig_22_919089,919362 AGAGT------------------------------------GAAT cmt_U3.1_scaffold_00002_756556,7 AGAGT------------------------------------GAAT fgr_U3.2_adopted_3_5416089,54163 AGAGT------------------------------------GAAT fve_U3.1_adopted_4_3439796,34400 AGAGT------------------------------------GAAT fox_U3.1_adopted_12_659471,65974 AGAGT------------------------------------GAAT nha_U3.2_adopted_7_924835,925104 AGAGT------------------------------------GAAT fgr_U3.1_adopted_1_5358155,53584 AGAGT------------------------------------GAAT fve_U3.2_adopted_1_837631,837906 AGAGT------------------------------------GAAT fox_U3.2_adopted_1_793773,794045 AGAGT------------------------------------GAAT fgr_U3.3_adopted_2_5912849,59131 AGAGT------------------------------------GAAT fve_U3.3_adopted_11_395602,39587 AGAGT------------------------------------GAAT fox_U3.3_adopted_13_1543981,1544 AGAGT------------------------------------GAAT nha_U3.1_adopted_1_516432,516701 AGAGT------------------------------------GAAT nha_U3.3_adopted_11_639971,64023 AGAGT------------------------------------GAAT vda_U3.1_Supercontig_1.11_81432, AGAGT------------------------------------GAAT val_U3.2_Supercontig_10_753475,7 AGAGT------------------------------------GAAT val_U3.3_Supercontig_21_51559,51 AGAGT------------------------------------GAAT vda_U3.3_Supercontig_1.38_72377, AGAGT------------------------------------GAAT val_U3.1_Supercontig_6_1364667,1 AGAGT------------------------------------GAAT vda_U3.2_Supercontig_1.15_871054 AGAGT------------------------------------GAAT aac_U3.1_scaffold_3_1603416,1603 AGAGT------------------------------------GAAG sal_U3.1_scaffold_1_2252300,2252 AGAGT------------------------------------GAAG aac_U3.2_scaffold_1_1566430,1566 AGAGT------------------------------------GAAG mpo_U3.1_supercont1.6_88390,8867 ACTC---TTATTTTTGTCCCTCGCT------CTGTCC-GTAAGGA mgi_U3.1_Supercontig_6.24_24340, ACCA----CTTATTTCGTCCTCGCT------CTGTCC-GAAAGGA mor_U3.1_adopted_3_2971155,29714 ACCA----CTTATTTCGTCCTCGCT------CTGTCC-GAAAGGA opi_U3.3_scaffold_10_248590,2489 CTTCACGGATCCCGTTACCCTCGCT-----CCTGCCT-GTAAAGG opi_U3.1_scaffold_07_346298,3466 CTTCACGGATCCCGTTACCCTCGCT-----TCTGCCT-GCAAAGG opi_U3.2_scaffold_13_777488,7778 CTTCATTGATCCCGTTACCCTCGCT-----CCTGCCT-GCAAAGG cpr_U3.1_scaffold_4_4573575,4573 CACC------ATTTTGACTCCTGAT------CTGCCT-GCAAAGG pan_U3.2_chromosome_5_2959505,29 CCCT---------TTTACTTTCGCTATTTTTCTGCCTGGCACTCG tte_U3.2_chromosome_3_423167,423 TTCC----TTTTTTTTACTCTCGCT------CTGCCT-GCGAAGG tte_U3.1_chromosome_6_245316,245 TCCT------TTTCTTACTCTCGCT------CTGCCT-GCAAAGG ndi_U3.3_scaffold_7_997991,99825 TCCT-------TAATTACTTTCGCT------CTGCCT-GCAAAGG ncr_U3.3_Supercontig_12.1_519200 TCCT-------TATTTACTCTCGCT------CTGCCT-GCAAAGG nte_U3.3_scaffold_81_4699595,469 TCCT-------TATTTACTTTCGCA------CTGCCT-GCAAAGG mth_U3.2_chromosome_7_399422,399 TTTT--------TTTTATTCTCGAT------CTGCCT-GCAAAGG pan_U3.1_chromosome_1_5861063,58 AGCC--------TTTTACTCTCGAT------CTGCCT-GCAAAGG pan_U3.3_chromosome_6_198157,198 AGCC-----TTTTTTTACTCTCGAC------CTGCCT-GCAAAGG cgl_U3.1_Supercontig_1.1_304529, TCCT-------TTTTTACTCTCGAT------CTGCCT-GCAAAGG cgl_U3.2_Supercontig_1.5_4455721 TCCT------TTTTTTACTCTCGTT------CTGCCT-GCAAAGG mth_U3.1_chromosome_5_4134858,41 CTTT--ATGTTTTTTTACTCTCGAC------CTGCCT-GCAAAGG tar_U3.1_scaffold_41_24194,24462 TCCC-------TTTTTACTCTCGCT------CTACCT-GCAAAGG ndi_U3.1_scaffold_4_320040,32031 TCCCATTTTTATATTTACTCTCGCT------CTGCCT-GCAAAGG ndi_U3.2_scaffold_10_249805,2500 TCCT-----TTTATTTACTCTCGCC------CTGCCT-GCAAAGG ncr_U3.2_Supercontig_12.2_383607 TCCT-TTTTATTTTTTACTCTCGTC------TTGCCT-GCAAAGG nte_U3.2_scaffold_4_535351,53562 TCCT--TTTATTTTTTACTCTCGTC------CTGCCT-GCAAAGG ncr_U3.1_Supercontig_12.1_934495 TCCC---TTTTATTTTACTCTCGCT------CTGCCT-GAAAAGG nte_U3.1_scaffold_32_2878,3147_- TCCC----TTTATTTTACTCTCGCT------CTGCCT-GCAAAGG tvi_U3.1_adopted_91_1724878,1725 ATTT------TCTGGTCCTCTCGTA------CCATCC-GGAAGGA tre_U3.1_GL985066_934413,934691_ ACTT-----TTTTGGTCCTCTCGCT------CTGTCC-GCAAGGA tre_U3.2_GL985057_45210,45477_-_ ACTT------CCTGGTCCTCTCGCT------CTGTCC-GCAAGGA tat_U3.2_contig_26_2105290,21055 TTTC--------TGGTCCTCTCGCC------CTGTCC-GCAAGGA tvi_U3.3_adopted_6_1230147,12304 ATTT-----TTCTGGTCCTCTCGAT------CTGTCT-GCAAGGA tre_U3.3_GL985090_19413,19679___ ACTT-----TTCTGGTCCTCTCGCA------CCATCC-GCAAGGA tvi_U3.2_adopted_91_852020,85229 TTTT-------ATGGTCCTCTCGCC------CTGTCC-GCAAGGA tat_U3.3_contig_12_192229,192492 TTCC--------CGGTCCTCTCGCA------CCGTCC-GCAAGGA tat_U3.1_contig_22_919089,919362 TTTC--------TGGTCCTCTCGCT------CTGTCC-GCAAGGA cmt_U3.1_scaffold_00002_756556,7 ACTT--GTTTTCTGGTCCTCTCGAA------CTGTCC-GCAAGGA fgr_U3.2_adopted_3_5416089,54163 ACCC----TTTTTGGTCCTCTCGCC------CTGTCC-GCAAGGA fve_U3.1_adopted_4_3439796,34400 ACCC--CTTTTCTGGTCCTCTCGAT------CTGTCC-GCAAGGA fox_U3.1_adopted_12_659471,65974 ACCC----CTTTTGGTCCTCTCGAT------CTGTCC-GCAAGGA nha_U3.2_adopted_7_924835,925104 ACCT--------TGGTCCTCTCGAT------CTCTCC-GCAAGGA fgr_U3.1_adopted_1_5358155,53584 ACCT------TTTGGTCCTCTCGAT------CTGTCC-GCAAGGA fve_U3.2_adopted_1_837631,837906 ACCT-------TTGGTCCTCTCGAT------CTGTCC-GCAAGGA fox_U3.2_adopted_1_793773,794045 ACCT-------TTGGTCCTCTCGAT------CTGTCC-GCAAGGA fgr_U3.3_adopted_2_5912849,59131 ACCT--------TGGTCCTCTCGCC------CTATCC-GCAAGGA fve_U3.3_adopted_11_395602,39587 ACCC-----TTTTGGTCCTCTCGCT------CTGTCC-GCAAGGA fox_U3.3_adopted_13_1543981,1544 ACCC-----TCTTGGTCCTCTCGCT------CTGTCC-GCAAGGA nha_U3.1_adopted_1_516432,516701 ACCT--------TGGTCCTCTCGCT------CTGTCC-GCAAGGA nha_U3.3_adopted_11_639971,64023 ACCT--------TGGTCCTCTCGCT------CTGTCT-GCAAAGA vda_U3.1_Supercontig_1.11_81432, GCCT------CTGGTTGCCCTCGCA------CCGCCT-GCAAAGG val_U3.2_Supercontig_10_753475,7 GGCT------CTGGTTGCCCTCGCA------CTGCCT-GCAAAGG val_U3.3_Supercontig_21_51559,51 GGCT------CCGGTTGCCCTCCAA------CTGCCT-GCAAAGG vda_U3.3_Supercontig_1.38_72377, GGCT------CTGGTTGCCCTCGCA------CTGCCT-GCAAAGG val_U3.1_Supercontig_6_1364667,1 GGCT------CTGGTTGCCCTCGCA------CTGCCT-GCAAAGG vda_U3.2_Supercontig_1.15_871054 GGCT------CTGGTTGCCCTCGCA------CTGCCT-GCAAAGG aac_U3.1_scaffold_3_1603416,1603 TTTT------CTGGTTGCTCTCGCA------CTGCCT-GCAAAGG sal_U3.1_scaffold_1_2252300,2252 TTTT------CTGGTTGCTCTCGCA------CTGCCT-GCAAAGG aac_U3.2_scaffold_1_1566430,1566 TTTC-------TGGTTGCTCTCGCA------CTGCCT-GCAAAGG mpo_U3.1_supercont1.6_88390,8867 TGGCGG--------------------------AGACGGTGCGCTT mgi_U3.1_Supercontig_6.24_24340, TGGCGG------------------------TAGCTGAGTTTTCTT mor_U3.1_adopted_3_2971155,29714 TGGCGG------------------------TAGCTGAGTTTTCTT opi_U3.3_scaffold_10_248590,2489 CAGCGGACCAGGAAGTGCATTTGTCTCTTCGGATTCAAATGTCTT opi_U3.1_scaffold_07_346298,3466 CAGCGGACCAGGAAGTGCGTCTGTGTCTTCGGATGCAGATGTCTT opi_U3.2_scaffold_13_777488,7778 CAGCGGACCAGGAAGCGCGTTTGTCTCTTCGGATTCAAATGTCTT cpr_U3.1_scaffold_4_4573575,4573 TGGCGG------------------------------TCTTTTCCC pan_U3.2_chromosome_5_2959505,29 TGCTGG--------------------------------------- tte_U3.2_chromosome_3_423167,423 CGGCGG--------------------------TCGCTGGCTCCCT tte_U3.1_chromosome_6_245316,245 TGGCGG-------------------------------TCCGGCCT ndi_U3.3_scaffold_7_997991,99825 TGGCGG---------------------------------TTGCCT ncr_U3.3_Supercontig_12.1_519200 TGGCGG---------------------------------TCGCTT nte_U3.3_scaffold_81_4699595,469 TGGCGG---------------------------------TCGCTT mth_U3.2_chromosome_7_399422,399 TGGCGG-----------------------------TCGCTGGCCT pan_U3.1_chromosome_1_5861063,58 TGGCGG----------------------------TCGCTGGCCTT pan_U3.3_chromosome_6_198157,198 TGGCGG----------------------------TCGCTGGCCTT cgl_U3.1_Supercontig_1.1_304529, CGGCGG-----------------------------TCGCTGGCTT cgl_U3.2_Supercontig_1.5_4455721 CGGCGG------------------------------TTGTTGCTT mth_U3.1_chromosome_5_4134858,41 TGGCGG-----------------------------TTGTTGGCTC tar_U3.1_scaffold_41_24194,24462 TGGCGG------------------------------TCGCTGGCC ndi_U3.1_scaffold_4_320040,32031 TGGCGA-------------------------------TC-TACTG ndi_U3.2_scaffold_10_249805,2500 TGGCGA-------------------------------TCTGCTTT ncr_U3.2_Supercontig_12.2_383607 TGGCGA--------------------------------TCTGCTT nte_U3.2_scaffold_4_535351,53562 TGGCGA--------------------------------TCTGCTT ncr_U3.1_Supercontig_12.1_934495 TGGCGA-------------------------------TCTTGCTT nte_U3.1_scaffold_32_2878,3147_- TGGCGA-------------------------------TCTTGCTT tvi_U3.1_adopted_91_1724878,1725 TGGCGG--------------------------------TAGAAGC tre_U3.1_GL985066_934413,934691_ CGGCGG------------------------------CGGTTGCTC tre_U3.2_GL985057_45210,45477_-_ TGGCGG------------------------------CGGTTGCCT tat_U3.2_contig_26_2105290,21055 TGGCGG------------------------------TAGTTGCCT tvi_U3.3_adopted_6_1230147,12304 TGGCGG-------------------------------CGTTGCCT tre_U3.3_GL985090_19413,19679___ TGGCGG-------------------------------CAAAGCTT tvi_U3.2_adopted_91_852020,85229 TGGCGG-----------------------------CAGTTGCCTT tat_U3.3_contig_12_192229,192492 TGGCGG------------------------------CAGAAGCCT tat_U3.1_contig_22_919089,919362 TGGCGG------------------------------CAGTAGCCT cmt_U3.1_scaffold_00002_756556,7 TGGCGG-------------------------------TCTTGGCT fgr_U3.2_adopted_3_5416089,54163 TAGCGG------------------------------TAATCACTT fve_U3.1_adopted_4_3439796,34400 TGGCGG-----------------------------TGGTCTGCTC fox_U3.1_adopted_12_659471,65974 TGGCGG------------------------------TGGTTGCTC nha_U3.2_adopted_7_924835,925104 GGGCGG------------------------------TAGTTGTCT fgr_U3.1_adopted_1_5358155,53584 TGGCGG-----------------------------TGGTTTGCCC fve_U3.2_adopted_1_837631,837906 CGGCGG--------------------------TCTTGCTTGCCTT fox_U3.2_adopted_1_793773,794045 TGGCGG-----------------------------TCGCCTGCTT fgr_U3.3_adopted_2_5912849,59131 TGGCGG------------------------------TGGCTGTCT fve_U3.3_adopted_11_395602,39587 TGGCGG------------------------------TGGTTGTCT fox_U3.3_adopted_13_1543981,1544 TGGCGG------------------------------TGGTTGCCT nha_U3.1_adopted_1_516432,516701 TGGCGG------------------------------TGGTTGCTA nha_U3.3_adopted_11_639971,64023 CGGCGG------------------------------CAGTCGCTT vda_U3.1_Supercontig_1.11_81432, CGGCGG----------------------------CTCCTCCTCCT val_U3.2_Supercontig_10_753475,7 TGGCGG-------------------------------CTCTCTCC val_U3.3_Supercontig_21_51559,51 TGGCGG-------------------------------CTCTTCTT vda_U3.3_Supercontig_1.38_72377, TGGCGG-------------------------------CTCTTCCT val_U3.1_Supercontig_6_1364667,1 TGGCGG-----------------------------CTCTTGCCCT vda_U3.2_Supercontig_1.15_871054 TGGCGG----------------------------CTCTTGCCCTT aac_U3.1_scaffold_3_1603416,1603 TGGCGG-------------------------------CATGGTTT sal_U3.1_scaffold_1_2252300,2252 TGGCGG-------------------------------CATAGCTC aac_U3.2_scaffold_1_1566430,1566 TGGCGG-------------------------------CATAGTTT mpo_U3.1_supercont1.6_88390,8867 CGCGCGCTGCTGTCTCTGTAT-----AGAGG-------------- mgi_U3.1_Supercontig_6.24_24340, GGCT--------ACT--GTAT-----AGAGG-------------- mor_U3.1_adopted_3_2971155,29714 GGCT--------ACT--GTAT-----AGAGG-------------- opi_U3.3_scaffold_10_248590,2489 CTAG-G------ACT--GTATTTTATAGAGG-------------- opi_U3.1_scaffold_07_346298,3466 CTAG-G------ACT--GTATTCAACAGAGG-------------- opi_U3.2_scaffold_13_777488,7778 CTAG-G------ACT--GTAT-TAACAGAGG-------------- cpr_U3.1_scaffold_4_4573575,4573 TCTGTGGATTTGGCT--GTAT-----AGGGA-------------- pan_U3.2_chromosome_5_2959505,29 -----G------ATTTGGAAC-----AGAAA-------------- tte_U3.2_chromosome_3_423167,423 CGCG-GGCTGCGGCT--GTAT-----AGAGA-------------- tte_U3.1_chromosome_6_245316,245 CGAG-CCGTG--GCT--GTAT-----AGAGA-------------- ndi_U3.3_scaffold_7_997991,99825 TACG-GCG----ACT--GTAT-----AGAAA-------------- ncr_U3.3_Supercontig_12.1_519200 CACG-GCG----ATT--GTAT-----AGAGA-------------- nte_U3.3_scaffold_81_4699595,469 CACG-GCG----ACT--GTAT-----AGAGA-------------- mth_U3.2_chromosome_7_399422,399 CGCG---CTGTGGCT--GTAT-----AGAGA-------------- pan_U3.1_chromosome_1_5861063,58 TGTG---CTGCGGCT--GTAT-----AGAGA-------------- pan_U3.3_chromosome_6_198157,198 TGTG---CTGCGGCT--GTAT-----AGAGA-------------- cgl_U3.1_Supercontig_1.1_304529, TTGG-GCCGCG-ACT--GTAT-----AGAGA-------------- cgl_U3.2_Supercontig_1.5_4455721 CGTG---CTGCGACT--GTAT-----AGAGA-------------- mth_U3.1_chromosome_5_4134858,41 TTTG-AGCTACAGCT--GTAT-----AGAGA-------------- tar_U3.1_scaffold_41_24194,24462 TTCG-GGCTGCGGCT--GTAT-----AGAGA-------------- ndi_U3.1_scaffold_4_320040,32031 TAAA-GTGGA--TTT--GTAT-----AGAGA-------------- ndi_U3.2_scaffold_10_249805,2500 TACA-GTGG---ATT--GTAT-----AGAGA-------------- ncr_U3.2_Supercontig_12.2_383607 TATAAGTAG---ATT--GTAT-----AGAGA-------------- nte_U3.2_scaffold_4_535351,53562 TATAAGTAG---ATT--GTAT-----AGAGA-------------- ncr_U3.1_Supercontig_12.1_934495 CACT-GCATG--ATT--GTAT-----AGAGA-------------- nte_U3.1_scaffold_32_2878,3147_- TACT-GCAAG--ATT--GTAT-----AGAGA-------------- tvi_U3.1_adopted_91_1724878,1725 CCTGTGCCTCT-GCT--GTAT-----AGAGA-------------- tre_U3.1_GL985066_934413,934691_ TTTGTGGCTTCCGCT--GTAT-----AGAGA-------------- tre_U3.2_GL985057_45210,45477_-_ TGCGCAGCT---GCT--GTAT-----AGAGA-------------- tat_U3.2_contig_26_2105290,21055 CGTGCTTCT---GCT--GTAT-----AGAGA-------------- tvi_U3.3_adopted_6_1230147,12304 TGCGCAATT---GCT--GTAT-----AGAGA-------------- tre_U3.3_GL985090_19413,19679___ TGCGCTTCT---GCT--GTAT-----AGAGA-------------- tvi_U3.2_adopted_91_852020,85229 TGTGCTTCT---GCT--GTAT-----AGAGA-------------- tat_U3.3_contig_12_192229,192492 CGCGCATCT---GCT--GTAT-----AGAGA-------------- tat_U3.1_contig_22_919089,919362 CGTG---CTTCTGCT--GTAT-----AGAGA-------------- cmt_U3.1_scaffold_00002_756556,7 CTCG-GGCCTTGACT--GTAT-----AGAGAGATGCGCAAGTCAG fgr_U3.2_adopted_3_5416089,54163 TTGT-GTGGTT-GCT--GTAT-----AGAGA-------------- fve_U3.1_adopted_4_3439796,34400 TTTTGAGTGGCTGCT--GTAT-----AGAGA-------------- fox_U3.1_adopted_12_659471,65974 TTTG-AGTGGCCGCT--GTAT-----AGAGA-------------- nha_U3.2_adopted_7_924835,925104 TGAACAGCT---GCT--GTAT-----AGAGA-------------- fgr_U3.1_adopted_1_5358155,53584 TTGG-GCGGCT-GCT--GTAT-----AGAGA-------------- fve_U3.2_adopted_1_837631,837906 CGTG-GCGGGTGGCT--GTAT-----AGAGA-------------- fox_U3.2_adopted_1_793773,794045 TGCT-GCGGGTGGCT--GTAT-----AGAGA-------------- fgr_U3.3_adopted_2_5912849,59131 CGTGCAGCT---GCT--GTAT-----AGAGA-------------- fve_U3.3_adopted_11_395602,39587 TGTGCAGCT---GCT--GTAT-----AGAGA-------------- fox_U3.3_adopted_13_1543981,1544 CGTGCAGCT---GCT--GTAT-----AGAGA-------------- nha_U3.1_adopted_1_516432,516701 TGCA-GCT----ACT--GTAT-----AGAGA-------------- nha_U3.3_adopted_11_639971,64023 TGAGCGGTT---GCT--GTAT-----AGAGA-------------- vda_U3.1_Supercontig_1.11_81432, CCCG-GGAGGAAGCT--GTAG-----AGAGG-------------- val_U3.2_Supercontig_10_753475,7 TTCT-GGGAGGAGCT--GTAC-----AGAGG-------------- val_U3.3_Supercontig_21_51559,51 CTGG-AAA----GCT--GTAT-----AGAGG-------------- vda_U3.3_Supercontig_1.38_72377, TCTG-GAAA---GCT--GTAT-----AGAGG-------------- val_U3.1_Supercontig_6_1364667,1 TCTC-GGGTGA-GCT--GTAT-----AGAGG-------------- vda_U3.2_Supercontig_1.15_871054 CTCGGGTGA---GCT--GTAT----AAGAGG-------------- aac_U3.1_scaffold_3_1603416,1603 ATCT-GT-----GCT--GTAT-----AGAGA-------------- sal_U3.1_scaffold_1_2252300,2252 TGCT-GT-----GCT--GTAT-----AGAGG-------------- aac_U3.2_scaffold_1_1566430,1566 CTGT--------GCT--GTAT-----AGAGA-------------- mpo_U3.1_supercont1.6_88390,8867 --------------------------ACT------------GTGA mgi_U3.1_Supercontig_6.24_24340, --------------------------ATT------------GTGA mor_U3.1_adopted_3_2971155,29714 --------------------------ATT------------GTGA opi_U3.3_scaffold_10_248590,2489 --------------------------GTG------------GTGA opi_U3.1_scaffold_07_346298,3466 --------------------------GTG------------GTGA opi_U3.2_scaffold_13_777488,7778 --------------------------GTG------------GTGA cpr_U3.1_scaffold_4_4573575,4573 --------------------------GTG------------GTGA pan_U3.2_chromosome_5_2959505,29 --------------------------GTG---------GCGATGA tte_U3.2_chromosome_3_423167,423 --------------------------GTG------------GCGA tte_U3.1_chromosome_6_245316,245 --------------------------GTG------------GCGA ndi_U3.3_scaffold_7_997991,99825 --------------------------GTG------------GCGA ncr_U3.3_Supercontig_12.1_519200 --------------------------GTG------------GCGA nte_U3.3_scaffold_81_4699595,469 --------------------------GTG------------GCGA mth_U3.2_chromosome_7_399422,399 --------------------------GTG------------GCGA pan_U3.1_chromosome_1_5861063,58 --------------------------GTG------------GCGA pan_U3.3_chromosome_6_198157,198 --------------------------GTG------------GCGA cgl_U3.1_Supercontig_1.1_304529, --------------------------GTG------------GCGA cgl_U3.2_Supercontig_1.5_4455721 --------------------------GTG------------GCGA mth_U3.1_chromosome_5_4134858,41 --------------------------GTG------------GCGA tar_U3.1_scaffold_41_24194,24462 --------------------------GTG------------GCGA ndi_U3.1_scaffold_4_320040,32031 --------------------------GTG------------GCGA ndi_U3.2_scaffold_10_249805,2500 --------------------------GTG------------GCGA ncr_U3.2_Supercontig_12.2_383607 --------------------------GTG------------GCGA nte_U3.2_scaffold_4_535351,53562 --------------------------GTG------------GCGA ncr_U3.1_Supercontig_12.1_934495 --------------------------GTG------------GCGA nte_U3.1_scaffold_32_2878,3147_- --------------------------GTG------------GCGA tvi_U3.1_adopted_91_1724878,1725 --------------------------GTT---GTTTTTCTCTTGA tre_U3.1_GL985066_934413,934691_ --------------------------GTT-----GTTTCTCTTGA tre_U3.2_GL985057_45210,45477_-_ --------------------------GTT-------GTCTCTTGA tat_U3.2_contig_26_2105290,21055 --------------------------GTT------GTTCTCTTGA tvi_U3.3_adopted_6_1230147,12304 --------------------------GTT---GTTTTCTTCTTGA tre_U3.3_GL985090_19413,19679___ --------------------------GTT----GTTTCTTCTTGA tvi_U3.2_adopted_91_852020,85229 --------------------------GTT--GTTTTTTCTCTTGA tat_U3.3_contig_12_192229,192492 --------------------------GTT----GTTTTCTCTTGA tat_U3.1_contig_22_919089,919362 --------------------------GCT---GTTTTCTTCTTGA cmt_U3.1_scaffold_00002_756556,7 TTATTGGCCAGCTTCGGTTGGTTCATGTCGACTTGCCACTTTTGA fgr_U3.2_adopted_3_5416089,54163 --------------------------GAT-----GCTACTCTTGA fve_U3.1_adopted_4_3439796,34400 --------------------------GAT-----GTTACTCTTGA fox_U3.1_adopted_12_659471,65974 --------------------------GAT-----GTTACTCTTGA nha_U3.2_adopted_7_924835,925104 --------------------------GTG-----TTTTCTCTTGA fgr_U3.1_adopted_1_5358155,53584 --------------------------GTTTGTCTTTTCCTCTTGA fve_U3.2_adopted_1_837631,837906 ---------------------TGGTTGTA-----------TTTGA fox_U3.2_adopted_1_793773,794045 ---------------------TGGTTGTA-----------TTTGA fgr_U3.3_adopted_2_5912849,59131 --------------------------GTT---TGTTTCCTCTTGA fve_U3.3_adopted_11_395602,39587 ---------------------------------TGGTTTGCTTGA fox_U3.3_adopted_13_1543981,1544 ---------------------------------TGGTTTGCTTGA nha_U3.1_adopted_1_516432,516701 --------------------------GTG----TTTTTCTCTTGA nha_U3.3_adopted_11_639971,64023 --------------------------GTT----TTTCCCTCTTGA vda_U3.1_Supercontig_1.11_81432, --------------------------GCG-----------TTTGA val_U3.2_Supercontig_10_753475,7 --------------------------GCG-----------TTTGA val_U3.3_Supercontig_21_51559,51 --------------------------GCG-----------TTTGA vda_U3.3_Supercontig_1.38_72377, --------------------------GCG-----------TTTGA val_U3.1_Supercontig_6_1364667,1 --------------------------GCG-----------TTTGA vda_U3.2_Supercontig_1.15_871054 --------------------------GCG-----------TTTTA aac_U3.1_scaffold_3_1603416,1603 --------------------------GCT-----------GTTGA sal_U3.1_scaffold_1_2252300,2252 --------------------------GCG-----------GTTGA aac_U3.2_scaffold_1_1566430,1566 --------------------------GCG-----------GTTGA mpo_U3.1_supercont1.6_88390,8867 T-GATCTCTATCCCGA----TCACCCAGGGTCTTGCCTTC----- mgi_U3.1_Supercontig_6.24_24340, T-GATCTCTACCCCGA----TTACCCAAGGTCTTGCCTTC----- mor_U3.1_adopted_3_2971155,29714 T-GATCTCTACCCCGA----TTACCCAAGGTCTTGCCTTC----- opi_U3.3_scaffold_10_248590,2489 T-GAGTTATACCCTGGA------CTGGAGGTC-TGCTTCTCTTTA opi_U3.1_scaffold_07_346298,3466 T-GAGCTATACCCTGG------ACTGGAGGTC-TGCTTCTCCTTT opi_U3.2_scaffold_13_777488,7778 T-GAGCTATACCCTGG------ACTGGAGGTC-TGCTTCTCCTTT cpr_U3.1_scaffold_4_4573575,4573 T-GATCTCTACCCCGA---TTTTCTCGAGGTCTTGCCTTC----- pan_U3.2_chromosome_5_2959505,29 TCGATCTATACGCCGT-----CTCTCGAGGACTTGCCTTT----- tte_U3.2_chromosome_3_423167,423 T-GATCTGTGCCCCGG-CTTTTCCCCGGGGTCTTGCCTTC----- tte_U3.1_chromosome_6_245316,245 T-GATCGGTACCCCGG----TATCTTGGGGTCTTGCCTTC----- ndi_U3.3_scaffold_7_997991,99825 T-GATCTGTACCCCGA----CTTCCAGAGGTC-TGCCTTC----- ncr_U3.3_Supercontig_12.1_519200 T-GATCTGTACCCCGA----TTTCCAGAGGTC-TGCCTTC----- nte_U3.3_scaffold_81_4699595,469 T-GATCTGTACCCCGA----TTTCCAGAGGTC-TGCCTTC----- mth_U3.2_chromosome_7_399422,399 T-GATCTGTACCCCGG---CTTCCCTGAGGTCTTGCTTTC----- pan_U3.1_chromosome_1_5861063,58 T-GATCTGTACCCTGA---TTTTCTTGAGGTCTTGCCTTT----- pan_U3.3_chromosome_6_198157,198 T-GATCTGTACCCCGA----TTTCTCGAGGTCTTGCCTTC----- cgl_U3.1_Supercontig_1.1_304529, T-GATCTGTACCCCGC----CTTTTCGAGGTCTTGCCTTC----- cgl_U3.2_Supercontig_1.5_4455721 T-GATCTGTACCCCGG---CTTTCTTGAGGACTTGCCTTC----- mth_U3.1_chromosome_5_4134858,41 T-GATCTGTACCCCGG--CTTTTCTCGAGGTCTTGCCTTC----- tar_U3.1_scaffold_41_24194,24462 T-GATCTGTACCCCGG----TTTCTCGAGGTCTTGCCTTC----- ndi_U3.1_scaffold_4_320040,32031 T-GATCTGTACCCCGATTGTTTTCTCAAGGTC-TGCCTTT----- ndi_U3.2_scaffold_10_249805,2500 T-GATCTGTACCCCGA----TTTCTCAGGGTC-TGCCTTC----- ncr_U3.2_Supercontig_12.2_383607 T-GATCTGTACCCCGATTTTTTTCTCAAGGTC-TGCCTTC----- nte_U3.2_scaffold_4_535351,53562 T-GATCTGTACCCCGATTTTTTTCTCAAGGTC-TGCCTTC----- ncr_U3.1_Supercontig_12.1_934495 T-GATCTGTACCCCGA----TTTCCCAAGGTC-TGCCTTC----- nte_U3.1_scaffold_32_2878,3147_- T-GATCTGTACCCCGA--TTTTTCTCAAGGTC-TGCCTTC----- tvi_U3.1_adopted_91_1724878,1725 T-GATCTCGACCCTAT--------CGATGGTC-TGCCCTT----- tre_U3.1_GL985066_934413,934691_ T-GATCTCGACCCTGC--------CGGTTCTTTTGTCTTC----- tre_U3.2_GL985057_45210,45477_-_ T-GATCTCGACCCTGT--------CTGTTGTT-TGCCTTC----- tat_U3.2_contig_26_2105290,21055 T-GATCTCGACCCTGT--------TCGTGGTCTTGCCTTC----- tvi_U3.3_adopted_6_1230147,12304 T-GATCTCGACCCTGT--------TCGTGGTC-TGCCTTT----- tre_U3.3_GL985090_19413,19679___ T-GATCTCGACCCTAT--------CGACGGC--TGCCTTT----- tvi_U3.2_adopted_91_852020,85229 T-GATCTCGACCCTGC--------CGGTGGTC-TGCCTTC----- tat_U3.3_contig_12_192229,192492 T-GATCTCGACCCTGT--------CGGCGGTCATGCCTTC----- tat_U3.1_contig_22_919089,919362 T-GATCTCGACCCTAT--------CCGTGGTCATGCCTTC----- cmt_U3.1_scaffold_00002_756556,7 T-GATCTCGACCCTGT--------CGGTGGTC-TGCCTTC----- fgr_U3.2_adopted_3_5416089,54163 T-GATCTCGGTCCTGA--------GTGCGGTCTTGCCTTT----- fve_U3.1_adopted_4_3439796,34400 T-GATCTCGGCCCTTG--------GGACGGTC-TGCCTTC----- fox_U3.1_adopted_12_659471,65974 T-GATCTCGGCCCCCA--------GAGCGGTC-TGCCCTC----- nha_U3.2_adopted_7_924835,925104 T-GATCTCGACCCTGA--------CTGTGGTCTTGCCTTC----- fgr_U3.1_adopted_1_5358155,53584 T-GATCTCGACCCTGA--------TTGCGGTCTTGCCTTC----- fve_U3.2_adopted_1_837631,837906 T-GATCTCGACCCTGA--------TTGCGGTCTTGCCTTC----- fox_U3.2_adopted_1_793773,794045 T-GATCTCGACCCTGA--------TTGCGGTCTTGCCTTC----- fgr_U3.3_adopted_2_5912849,59131 T-GATCTCGACCCCAG--------CTGTGGTC-TGCCTTC----- fve_U3.3_adopted_11_395602,39587 T-GATCTCGACCCCAG--------CTGTGGTCTTGCCTTT----- fox_U3.3_adopted_13_1543981,1544 T-GATCTCGACCCCAG--------CTGTGGTCTTGCCTTC----- nha_U3.1_adopted_1_516432,516701 T-GATCTCGATCCCCT--------CTGCGGTCTTGCCTTC----- nha_U3.3_adopted_11_639971,64023 T-GATCTCGACCCCAG--------CAGCGGTCTTGCCTTC----- vda_U3.1_Supercontig_1.11_81432, T-GATCTCGTCCCTGT-------CTTGCGGTCTTGCCCTT----- val_U3.2_Supercontig_10_753475,7 T-GATCTCGTCCCTGT-------CTTGCGGTCTTGCCCTT----- val_U3.3_Supercontig_21_51559,51 T-GATCTCGTCCCTGT-------CTTGTGGTCTTGCCTTT----- vda_U3.3_Supercontig_1.38_72377, T-GATCTCGTCCCTGT-------CTTGCGGTCTTGCCCTT----- val_U3.1_Supercontig_6_1364667,1 T-GATCTCGTCCCTGC-------TTTGCGGTCTTGCCCTT----- vda_U3.2_Supercontig_1.15_871054 T-GATCTCGTCCCTGC-------TTCGCGGTCTTGCCCTT----- aac_U3.1_scaffold_3_1603416,1603 T-GATCTCGACCCCAT-------CTCGTGGTCTTGCCTTC----- sal_U3.1_scaffold_1_2252300,2252 T-GATCTCGACCCTGT-------CTTGTGGTCTTGCCTTC----- aac_U3.2_scaffold_1_1566430,1566 T-GATCTCGACCCTGT-------CTCGTGGTCTTGCCTTC----- mpo_U3.1_supercont1.6_88390,8867 ---G-GGCGCCTGGGCGGGATGGGCA-GCGAT-GGACGTCTGACA mgi_U3.1_Supercontig_6.24_24340, ---G-GGCGCTTGGGCGGGGTGGGCT-TCGAC-GCAAATCTGACA mor_U3.1_adopted_3_2971155,29714 ---G-GGCGCTTGGGCGGGGTGGGCT-TCGAC-GCAAATCTGACA opi_U3.3_scaffold_10_248590,2489 CGAG-GGCTCTCTGCTAGGGTGGGTG-TCGAT-GGACGTCTGACC opi_U3.1_scaffold_07_346298,3466 GGAG-GGCGCTCTGCCAGGGTGGGTG-TCGAT-GGACGTCTGACC opi_U3.2_scaffold_13_777488,7778 GGAG-GGCGCTCTGCCAGGGTGGGTG-TCGAT-GGACGTCTGACC cpr_U3.1_scaffold_4_4573575,4573 ---G-GGCGCTTGGGCGGGGTGGGTG-TCGAT-GGAATTCTGACA pan_U3.2_chromosome_5_2959505,29 ---G-GGCGCTTGGATGGGCTGGGTGTTTGAT-GGAAGTCTGACC tte_U3.2_chromosome_3_423167,423 ---G-GGCGCTCGGGCGGGGCGGGTG-TCGAT-GGAAGTCTGACC tte_U3.1_chromosome_6_245316,245 ---G-GGCGCTCAAGCGGGGTGGGTG-TCGAT-GGAAGTCTGACC ndi_U3.3_scaffold_7_997991,99825 ---G-GGCGCTTTGGCGGGGTGGGTG-TCGAT-GGAAGTCTGACG ncr_U3.3_Supercontig_12.1_519200 ---G-GGCGCTTTGGCGGGGTGGGTG-TCGAT-GGAAGTCTGACG nte_U3.3_scaffold_81_4699595,469 ---G-GGCGCTTTGGCGGGGTGGGTG-TCGAT-GGAAGTCTGACG mth_U3.2_chromosome_7_399422,399 ---G-GGCGCTCAGGCGGGGTGGGTG-TCGAT-GGAAGTCTGACC pan_U3.1_chromosome_1_5861063,58 ---G-GGCGCTCAAGCGGGGTGGGTA-TCGAT-GGAAGTCTGACC pan_U3.3_chromosome_6_198157,198 ---G-GGCGCTTGAACGGGGTGGGTG-TCGAT-GGAAGTCTGACC cgl_U3.1_Supercontig_1.1_304529, ---G-GGCGCTCGGGCGGGGTGGGTG-TCGAT-GGAAGTCTGACC cgl_U3.2_Supercontig_1.5_4455721 ---G-GGCGCTCAGGCGGGGTGGGTA-TCGAT-GGAAGTCTGACC mth_U3.1_chromosome_5_4134858,41 ---G-GGCGCTCGGGCGGGGTGGGTG-TCGAT-GGAAGTCTGACC tar_U3.1_scaffold_41_24194,24462 ---G-GGCGCTCGGGCGGGGTGGGTG-TCGAT-GGAAGTCTGACC ndi_U3.1_scaffold_4_320040,32031 ---G-GGCGCTTGGGCGGGGTGGGTT-TCGAT-GGAAGTCTGACT ndi_U3.2_scaffold_10_249805,2500 ---G-GGCGCTTGGGCGGGGTGGGTT-TCGAT-GGAAGTCTGACC ncr_U3.2_Supercontig_12.2_383607 ---G-GGCGCTTGGGCGGGGTGGGTT-TCGAT-GGAAGTCTGACC nte_U3.2_scaffold_4_535351,53562 ---G-GGCGCTTGGGCGGGGTGGGTT-TCGAT-GGAAGTCTGACC ncr_U3.1_Supercontig_12.1_934495 ---G-GGCGCTTGGGCGGGGTGGGTT-TCGAT-GGAAGTCTGACC nte_U3.1_scaffold_32_2878,3147_- ---G-GGCGCTTGGGCGGGGTGGGTT-TCGAT-GGAAGTCTGACC tvi_U3.1_adopted_91_1724878,1725 ---G-GGCGCATTGGTTGGGTGGTTG-TCGAT-GGACGTCTGACA tre_U3.1_GL985066_934413,934691_ ---G-GGCATGCTGGTAGGGTGGGTG-TCGAT-GGACGTCTGACA tre_U3.2_GL985057_45210,45477_-_ ---GTAGCACGCGGGCAGGGTGGGTG-TTGAT-GGACGTCTGACA tat_U3.2_contig_26_2105290,21055 ---G-GGCGCATGGGCAGGGTGGGTG-TTGAT-GGACGTCTGACA tvi_U3.3_adopted_6_1230147,12304 ---G-GGCGCATGGGCAGGGTGGGTG-TTGAT-GGACGTCTGACA tre_U3.3_GL985090_19413,19679___ ---G-GGCCCGTTGGTGGGGTGGATG-TCGAT-GGACGTCTGACA tvi_U3.2_adopted_91_852020,85229 ---G-GGCGCGCTGGTAGGGTGGGTG-TCGAT-GGACGTCTGACA tat_U3.3_contig_12_192229,192492 ---G-GGCGCGCTGGCAGGGTGGATG-TCGAT-GGACGTCTGACA tat_U3.1_contig_22_919089,919362 ---G-GGCGCACTGGTAGGGTGGGTG-TCGAT-GGACGTCTGACA cmt_U3.1_scaffold_00002_756556,7 ---G-GGCGCACTAACAGGGTGGGTG-TTGAT-GGACGTCTGACA fgr_U3.2_adopted_3_5416089,54163 ---G-GGCGCGCGCTTGGGACGGGCA-TTGAT-GGACGTCTGACA fve_U3.1_adopted_4_3439796,34400 ---G-GGCGCGTTCTTGGGGCGGGCA-TTGAT-GGACGTCTGACA fox_U3.1_adopted_12_659471,65974 ---G-GGCGCGCTTTTGGGGCGGGCA-TTGAT-GGACGTCTGACA nha_U3.2_adopted_7_924835,925104 ---G-GGCGCGCGGTTGGGGTGGGTG-TTGAT-GGACGTCTGACA fgr_U3.1_adopted_1_5358155,53584 ---G-GGCGCGCGGTCGGGGTGGGTG-TTGAT-GGACGTCTGACA fve_U3.2_adopted_1_837631,837906 ---G-GGCGCGCAGTCGGGGTGGGTG-TTGAT-GGACGTCTGACA fox_U3.2_adopted_1_793773,794045 ---G-GGCGCGCGGTCGGGGTGGGTG-TTGAT-GGACGTCTGACA fgr_U3.3_adopted_2_5912849,59131 ---G-GGCGCGTGGCTGGGGTGGGTG-TTGAT-GGACGTCTGACA fve_U3.3_adopted_11_395602,39587 ---G-GGCGCGTGGCTGGGGTGGGTG-TTGAT-GGACGTCTGACA fox_U3.3_adopted_13_1543981,1544 ---G-GGCGCGTGGCTGGGGTGGGTG-TTGAT-GGACGTCTGACA nha_U3.1_adopted_1_516432,516701 ---G-GGCGCGCGGTCGGGATGGGTG-TTGAT-GGACGTCTGACA nha_U3.3_adopted_11_639971,64023 ---G-GGCGCGCGGTTGGGGTGGGTG-TTGAT-GGACGTCTGACA vda_U3.1_Supercontig_1.11_81432, ---G-GGCGCGCGGGCGGGGTGGGTG-TTGAC-GGACGTCTGACA val_U3.2_Supercontig_10_753475,7 ---G-GGCGCGC-GGTGGGGTGG-TG-TTGACGGGACGTCTGACA val_U3.3_Supercontig_21_51559,51 ---G-GGCGCGCAAACGGGGTGGGTG-CTGAC-GGACGTCTGACA vda_U3.3_Supercontig_1.38_72377, ---G-GGCGCGCGGACGGGGTGGGTG-CTGAT-GGACGTCTGACA val_U3.1_Supercontig_6_1364667,1 ---G-GGCGCGCGGGCGGGGTGGGTG-TTGAC-GGACGTCTGACA vda_U3.2_Supercontig_1.15_871054 ---G-GGCGCGCGGGCGGGGTGGGTG-TTGAC-GGACGTCTGACA aac_U3.1_scaffold_3_1603416,1603 ---G-GGCGCACGGGTGGGGTAGGTG-TTGAT-GGACGTCTGACA sal_U3.1_scaffold_1_2252300,2252 ---G-GGCGTACGAGCAGGGTGGGTG-CTGAT-GGACGTCTGACA aac_U3.2_scaffold_1_1566430,1566 ---G-GGCGCACGGATAGGGTGGGTG-CTGAT-GGACGTCTGACA mpo_U3.1_supercont1.6_88390,8867 GGC mgi_U3.1_Supercontig_6.24_24340, GGC mor_U3.1_adopted_3_2971155,29714 GGC opi_U3.3_scaffold_10_248590,2489 GGC opi_U3.1_scaffold_07_346298,3466 GGC opi_U3.2_scaffold_13_777488,7778 GGC cpr_U3.1_scaffold_4_4573575,4573 GGC pan_U3.2_chromosome_5_2959505,29 GGC tte_U3.2_chromosome_3_423167,423 GGC tte_U3.1_chromosome_6_245316,245 GGC ndi_U3.3_scaffold_7_997991,99825 CGC ncr_U3.3_Supercontig_12.1_519200 CGC nte_U3.3_scaffold_81_4699595,469 CGC mth_U3.2_chromosome_7_399422,399 GGC pan_U3.1_chromosome_1_5861063,58 GGC pan_U3.3_chromosome_6_198157,198 GGC cgl_U3.1_Supercontig_1.1_304529, GGC cgl_U3.2_Supercontig_1.5_4455721 GGC mth_U3.1_chromosome_5_4134858,41 GGC tar_U3.1_scaffold_41_24194,24462 GGC ndi_U3.1_scaffold_4_320040,32031 GGC ndi_U3.2_scaffold_10_249805,2500 GGC ncr_U3.2_Supercontig_12.2_383607 GGC nte_U3.2_scaffold_4_535351,53562 GGC ncr_U3.1_Supercontig_12.1_934495 GGC nte_U3.1_scaffold_32_2878,3147_- GGC tvi_U3.1_adopted_91_1724878,1725 GGC tre_U3.1_GL985066_934413,934691_ GGC tre_U3.2_GL985057_45210,45477_-_ GGC tat_U3.2_contig_26_2105290,21055 GGC tvi_U3.3_adopted_6_1230147,12304 GGC tre_U3.3_GL985090_19413,19679___ GGC tvi_U3.2_adopted_91_852020,85229 GGC tat_U3.3_contig_12_192229,192492 GGC tat_U3.1_contig_22_919089,919362 GGC cmt_U3.1_scaffold_00002_756556,7 GGC fgr_U3.2_adopted_3_5416089,54163 GGC fve_U3.1_adopted_4_3439796,34400 GGC fox_U3.1_adopted_12_659471,65974 GGC nha_U3.2_adopted_7_924835,925104 GGC fgr_U3.1_adopted_1_5358155,53584 GGC fve_U3.2_adopted_1_837631,837906 GGC fox_U3.2_adopted_1_793773,794045 GGC fgr_U3.3_adopted_2_5912849,59131 GGC fve_U3.3_adopted_11_395602,39587 GGC fox_U3.3_adopted_13_1543981,1544 GGC nha_U3.1_adopted_1_516432,516701 GGC nha_U3.3_adopted_11_639971,64023 GGC vda_U3.1_Supercontig_1.11_81432, GGC val_U3.2_Supercontig_10_753475,7 GGC val_U3.3_Supercontig_21_51559,51 GGC vda_U3.3_Supercontig_1.38_72377, GGC val_U3.1_Supercontig_6_1364667,1 GGC vda_U3.2_Supercontig_1.15_871054 GGC aac_U3.1_scaffold_3_1603416,1603 GGC sal_U3.1_scaffold_1_2252300,2252 GGC aac_U3.2_scaffold_1_1566430,1566 GGC