CLUSTAL W (1.83) multiple sequence alignment aar_U3.1_scaffold_2_623118,62334 TCCGACTTT------------------------------------ bco_U3.1_scaffold_14_641730,6420 CGCGACTTT--------GTATGTCTATGAACCCACCCCTACTCTT mpi_U3.1_scaffold_9_1682657,1682 AGTGATCT---------GTAAGAACATCTTTCCACCCCATACATT ztr_U3.1_chr_9_1378733,1378947_- AGCGATTTT--------GTGAGTCTTCCAACCCACCCCTACACTG abr_U3.1_Contig8_651009,651231__ TTCGATCA---------GTTAGTCCTACCCAGCCCCTACATTTGG cbb_U3.1_scaffold_6_537751,53794 GTCGACGA---------GTGAGTTCTCCCCTACAGCCTCCTACTC lma_U3.1_lm_SuperContig_5_v2_134 GTCGATCTTACTTC---GTATGTTTACCCCATATACCACAACAAT pno_U3.1_Supercontig_1.10_491244 TTCGACGA---------GTACGTTTTCCTAGACCCCTACCTTTTG bmy_U3.1_scaffold_8_458264,45854 CACGATCAT--------GTATGAAAAAAGAAAAGCCCCCCATACT ptt_U3.1_Supercontig_1.1_2420652 TACGATCAT--------GCAAGTCCCCCCAGTCCCCCCTACATTT abr_U3.2_Contig10_1103041,110326 TACGATCA------------------------------------- mdu_U3.1_scaffold_6_238250,23847 GTCGACTC------------------------------------- ana_U3.1_scaffold_15_636383,6366 GTCGACTTTACT-----GTGAGTTACCACCACCCTTCAGTGACTA ana_U3.2_scaffold_10_356255,3564 GTCGACTTTACTTC---GTACGTTCTACCACTCCCTGGTTTATAT aar_U3.1_scaffold_2_623118,62334 --------------------------------------------- bco_U3.1_scaffold_14_641730,6420 GCATCAACATGCTAATACAATCCCTAG------------------ mpi_U3.1_scaffold_9_1682657,1682 TCCACGCCTACTAACAATCGCATGCAG------------------ ztr_U3.1_chr_9_1378733,1378947_- CCCAATACCACACCTGCTGACCATCTCTGCCCTTCCTTCAG---- abr_U3.1_Contig8_651009,651231__ ATTCCATCACTAACAGCAGCGCAG--------------------- cbb_U3.1_scaffold_6_537751,53794 CCCTCTGCCTGTTGCTAACGTCACCGCAG---------------- lma_U3.1_lm_SuperContig_5_v2_134 CATGGGAAGCCAGTTGCTGACCCCCCCACCAG------------- pno_U3.1_Supercontig_1.10_491244 CTATCCATCTAACAGCGCTGCAG---------------------- bmy_U3.1_scaffold_8_458264,45854 TTCGACAGCCCTGCTAACGACGATATCAG---------------- ptt_U3.1_Supercontig_1.1_2420652 TACAGCCATGCTAACAGCGCGCAG--------------------- abr_U3.2_Contig10_1103041,110326 --------------------------------------------- mdu_U3.1_scaffold_6_238250,23847 --------------------------------------------- ana_U3.1_scaffold_15_636383,6366 CCACACCTTTTAAACATCATACTGACCTCTAAAACAG-------- ana_U3.2_scaffold_10_356255,3564 CAATGACCTTCTAGAGCATGTTACTGACCCCCATAACAG------ aar_U3.1_scaffold_2_623118,62334 --------------------------------------------- bco_U3.1_scaffold_14_641730,6420 --------------------------------------------- mpi_U3.1_scaffold_9_1682657,1682 --------------------------------------------- ztr_U3.1_chr_9_1378733,1378947_- --------------------------------------------- abr_U3.1_Contig8_651009,651231__ --------------------------------------------- cbb_U3.1_scaffold_6_537751,53794 --------------------------------------------- lma_U3.1_lm_SuperContig_5_v2_134 --------------------------------------------- pno_U3.1_Supercontig_1.10_491244 --------------------------------------------- bmy_U3.1_scaffold_8_458264,45854 --------------------------------------------- ptt_U3.1_Supercontig_1.1_2420652 --------------------------------------------- abr_U3.2_Contig10_1103041,110326 --------------------------------------------- mdu_U3.1_scaffold_6_238250,23847 --------------------------------------------- ana_U3.1_scaffold_15_636383,6366 --------------------------------------------- ana_U3.2_scaffold_10_356255,3564 --------------------------------------------- aar_U3.1_scaffold_2_623118,62334 --------------------------ACTTCATAGAATCATTT-- bco_U3.1_scaffold_14_641730,6420 --------------------------ACTTCATAGAATCATTT-- mpi_U3.1_scaffold_9_1682657,1682 -------------------------TACTTCATAGAATCATTT-- ztr_U3.1_chr_9_1378733,1378947_- --------------------------ACTTCAAGGAATCTTTT-- abr_U3.1_Contig8_651009,651231__ -------------------------TACTTCATAGAATCATTT-- cbb_U3.1_scaffold_6_537751,53794 -------------------------TACTTCTAAGAATCATTT-- lma_U3.1_lm_SuperContig_5_v2_134 -------------------------------ATAGAATCTATT-- pno_U3.1_Supercontig_1.10_491244 -------------------------TACTTCATAGAATCATTT-- bmy_U3.1_scaffold_8_458264,45854 --------------------------ACTTCATAGAATCATTT-- ptt_U3.1_Supercontig_1.1_2420652 --------------------------ACTTCATAGAATCATTT-- abr_U3.2_Contig10_1103041,110326 -------------------------TACTTCATAGAATCATTT-- mdu_U3.1_scaffold_6_238250,23847 -------------------------TACTCTATGGAATCTTTT-- ana_U3.1_scaffold_15_636383,6366 -----------------------------TCATAGAATCATTT-- ana_U3.2_scaffold_10_356255,3564 -------------------------------ATAGAATCATTT-- aar_U3.1_scaffold_2_623118,62334 --------------------------------------------- bco_U3.1_scaffold_14_641730,6420 --------------------------------------------- mpi_U3.1_scaffold_9_1682657,1682 --------------------------------------------- ztr_U3.1_chr_9_1378733,1378947_- --------------------------------------------- abr_U3.1_Contig8_651009,651231__ --------------------------------------------- cbb_U3.1_scaffold_6_537751,53794 -GTATGTATTCCTGAATCCATCAGGTTGCGCCCTTCACCCACTAA lma_U3.1_lm_SuperContig_5_v2_134 --------------------------------------------- pno_U3.1_Supercontig_1.10_491244 --------------------------------------------- bmy_U3.1_scaffold_8_458264,45854 --------------------------------------------- ptt_U3.1_Supercontig_1.1_2420652 --------------------------------------------- abr_U3.2_Contig10_1103041,110326 --------------------------------------------- mdu_U3.1_scaffold_6_238250,23847 --------------------------------------------- ana_U3.1_scaffold_15_636383,6366 --------------------------------------------- ana_U3.2_scaffold_10_356255,3564 --------------------------------------------- aar_U3.1_scaffold_2_623118,62334 --------------CT-ACAGTCGAC------------------- bco_U3.1_scaffold_14_641730,6420 --------------CT-ATAGTAAA-------------------- mpi_U3.1_scaffold_9_1682657,1682 --------------CT-ATAGTAAACATTCACAACTGTATTCTTG ztr_U3.1_chr_9_1378733,1378947_- --------------CT-ATAGTAAA-------------------- abr_U3.1_Contig8_651009,651231__ --------------CTAATAGTATG-------------------- cbb_U3.1_scaffold_6_537751,53794 CCCCACAAAAG---CT-ATAGTAGA-------------------- lma_U3.1_lm_SuperContig_5_v2_134 --------------CT-ATAGTAAT-------------------- pno_U3.1_Supercontig_1.10_491244 --------------CT-ATAGTTAGT------------------- bmy_U3.1_scaffold_8_458264,45854 --------------CTAATAGTATG-------------------- ptt_U3.1_Supercontig_1.1_2420652 --------------CT-TTAGTATG-------------------- abr_U3.2_Contig10_1103041,110326 --------------CTAATAGTGTG-------------------- mdu_U3.1_scaffold_6_238250,23847 --------------CT-ATAGTAGA-------------------- ana_U3.1_scaffold_15_636383,6366 --------------TC-TTTATGTAA------------------- ana_U3.2_scaffold_10_356255,3564 --------------CT-AAAGTAAG-------------------- aar_U3.1_scaffold_2_623118,62334 ----------------------------TTCTCATC-ACTGAGTA bco_U3.1_scaffold_14_641730,6420 ----------------------------CGTCCATG-ACCGTAAT mpi_U3.1_scaffold_9_1682657,1682 TAAGCGATCCCGACAACCGATCAAGCGACATCCTTT-ACTGACAA ztr_U3.1_chr_9_1378733,1378947_- ----------------------------CATCCGCA-ACTGTGTA abr_U3.1_Contig8_651009,651231__ ----------------------------CATCCTTC-TCTGAGTT cbb_U3.1_scaffold_6_537751,53794 -----------------------------GTCCTCT-TCTGAGCT lma_U3.1_lm_SuperContig_5_v2_134 ----------------------------CGTCTCCTTTCTGAGCT pno_U3.1_Supercontig_1.10_491244 ----------------------------CGTCCTCT-TCTGAGCT bmy_U3.1_scaffold_8_458264,45854 ----------------------------CTTCTCCT-TCTGAGTT ptt_U3.1_Supercontig_1.1_2420652 ----------------------------CATCCTCT-TCTGAGTT abr_U3.2_Contig10_1103041,110326 ----------------------------CATCCTCT-TCTGAGTT mdu_U3.1_scaffold_6_238250,23847 ----------------------------CGACCTTA-TCTGAGCT ana_U3.1_scaffold_15_636383,6366 ----------------------------CTTCAACA-TCTGAACT ana_U3.2_scaffold_10_356255,3564 ----------------------------CTTCTTTTATCTGAACT aar_U3.1_scaffold_2_623118,62334 CCTCAA-----CTCAGCTGCATGATCCCAAT-------------- bco_U3.1_scaffold_14_641730,6420 CTCCAA-----AAGAGCTACGGA--TTCCATC---GTAAGCTTGC mpi_U3.1_scaffold_9_1682657,1682 CCTCCAAGCACAGAAGCTACAGA--CTTCAGC------------- ztr_U3.1_chr_9_1378733,1378947_- CCCTAA-----AAAAGTCACAGA--CTCCACC------------- abr_U3.1_Contig8_651009,651231__ ACTCTA-----AGTAGCCACAGAATCTCCATC------------- cbb_U3.1_scaffold_6_537751,53794 TCTCAA-----AAAAGCCACAGAATCTCCACC------------- lma_U3.1_lm_SuperContig_5_v2_134 TCTCAA-----AAAAGCCACAGAATCCCCAAC------------- pno_U3.1_Supercontig_1.10_491244 TCTCAA-----AAAAGCCACAGATTCTCCAAC------------- bmy_U3.1_scaffold_8_458264,45854 ACTCTA-----AGTAGCCACAGAATCTCCAGC------------- ptt_U3.1_Supercontig_1.1_2420652 ACTCTA-----AGTAGCCACAGAATCCTAATC------------- abr_U3.2_Contig10_1103041,110326 ACTCTA-----AGTAGCCACAGAATCTCCATC------------- mdu_U3.1_scaffold_6_238250,23847 CCTTAC-----CAGAGCCACAGAA-CTCCAAC------------- ana_U3.1_scaffold_15_636383,6366 CTTCAA-----AAGAGCCACAGAA-CTCCAAC------------- ana_U3.2_scaffold_10_356255,3564 CTTCAA-----AAGAGCCACAGAA-CTCCAAC------------- aar_U3.1_scaffold_2_623118,62334 --------------------------------------------- bco_U3.1_scaffold_14_641730,6420 CTCGAACGCAGCACCACTCGTGGACAACATGCTGACTTCTTCCTC mpi_U3.1_scaffold_9_1682657,1682 --------------------------------------------- ztr_U3.1_chr_9_1378733,1378947_- --------------------------------------------- abr_U3.1_Contig8_651009,651231__ --------------------------------------------- cbb_U3.1_scaffold_6_537751,53794 --------------------------------------------- lma_U3.1_lm_SuperContig_5_v2_134 --------------------------------------------- pno_U3.1_Supercontig_1.10_491244 --------------------------------------------- bmy_U3.1_scaffold_8_458264,45854 --------------------------------------------- ptt_U3.1_Supercontig_1.1_2420652 --------------------------------------------- abr_U3.2_Contig10_1103041,110326 --------------------------------------------- mdu_U3.1_scaffold_6_238250,23847 --------------------------------------------- ana_U3.1_scaffold_15_636383,6366 --------------------------------------------- ana_U3.2_scaffold_10_356255,3564 --------------------------------------------- aar_U3.1_scaffold_2_623118,62334 ------CCGGCTGATGAGCTATACCCTCGGCGCCCCAGAGTGAGG bco_U3.1_scaffold_14_641730,6420 TAG---CTGGCTGATGAGCCGAACCAGC-TCGCGATAGAGTGACG mpi_U3.1_scaffold_9_1682657,1682 ------CAGGCTGATGAGCAATAACCGCGCCGCCCAAGAGTGATG ztr_U3.1_chr_9_1378733,1378947_- ------CTGGTTGATGAGAAC--ACTGCGGTGCCCAAGAGTGATG abr_U3.1_Contig8_651009,651231__ ------CTGGTTGATGACTATCAGCCTCGATGTCCCGGAGTGAGG cbb_U3.1_scaffold_6_537751,53794 ------CTGGTTGATGAGATTCAGCCTCGATGTCCCGGAGTGAGG lma_U3.1_lm_SuperContig_5_v2_134 ------CTGGTTGATGAGCAGTAGCCTCGATGCCCCGGAGTGAGG pno_U3.1_Supercontig_1.10_491244 ------CTGGTTGATGAGTTTCAGCCCCGATGTCCCGGAGTGAGG bmy_U3.1_scaffold_8_458264,45854 ------CTGGCTGATGACTGAGAGCCTCGATGTCCCGGAGTGAGG ptt_U3.1_Supercontig_1.1_2420652 ------CTGGTTGATGACTTTCAGCTTCGATATCCCGGAGTGAGG abr_U3.2_Contig10_1103041,110326 ------CTGGTTGATGACTATCAGCCTCGATGTCCCGGAGTGAGG mdu_U3.1_scaffold_6_238250,23847 ------CTGAACGATGTCTTACATCTCCGATGCTCTAGAGTGAAG ana_U3.1_scaffold_15_636383,6366 ------CTGGCGGATGAGATACATCCCCGGCGCCTTAGAGTGATA ana_U3.2_scaffold_10_356255,3564 ------CTGGCGGATGAGCTACATCCCCGATGCCCTAGAGTGATA aar_U3.1_scaffold_2_623118,62334 CCT--TTTATGCAG-----GTGGCTTCGGCTCCTGT--GGCGATG bco_U3.1_scaffold_14_641730,6420 CCG----TATGTAGCTCGCATGGCTTCGGCCCCGAGTTGGCGATG mpi_U3.1_scaffold_9_1682657,1682 CCA---TTATG--------GCGGTCTCCGGACTGCT--GGTGATG ztr_U3.1_chr_9_1378733,1378947_- CCAACATGTTGA-------AGTCCTTCGGGACTTCGATGGTGATG abr_U3.1_Contig8_651009,651231__ CCTTATTTACG--------ACTGCTTCGGCGGTCGT--GGCGATG cbb_U3.1_scaffold_6_537751,53794 CCT-TATTACG--------TTTGCTTCGGCGAGCGT--GGCGATG lma_U3.1_lm_SuperContig_5_v2_134 CCT-TGTAACG--------TTTGCTTCGGCGAACGT--GGCGATG pno_U3.1_Supercontig_1.10_491244 CCT-TATTACG--------ATTGCTTCGGCAAACGT--GGCGATG bmy_U3.1_scaffold_8_458264,45854 CCT-TATTACG--------ATTGCTTCGGCAAGCGT--GGCGATG ptt_U3.1_Supercontig_1.1_2420652 CCT-TATTACG--------ATTGCTTCGGCGAGCGT--GGCGATG abr_U3.2_Contig10_1103041,110326 CTT---ATACG--------CGTGCTTTGGCGCGCGT--GGCGATG mdu_U3.1_scaffold_6_238250,23847 CCG--TTTTTGGTCC----GCTGCTTTGTCGGCGGATTGGCGATG ana_U3.1_scaffold_15_636383,6366 CCA--AGTGCT--------TTGGCTCCGGCCTCAGC--GGTGATG ana_U3.2_scaffold_10_356255,3564 CCT--GGTATC--------TTGGCTCCGGCCTCGAT--GGTGATG aar_U3.1_scaffold_2_623118,62334 ATCTCTCGTTAGCTAGAGCTTTG-GATTCG-TCCGGCTCTTGGTT bco_U3.1_scaffold_14_641730,6420 ATCTCTCCCTGCTTGCAC--TTG-GCTTCG-GCCGG--TGCTCGT mpi_U3.1_scaffold_9_1682657,1682 ATCTCGCCCTGCTTGAAC--TTG-ACTTCG-GTTGG--TGCTCTC ztr_U3.1_chr_9_1378733,1378947_- ATCTCGCCCTGCTTGGGT--TCA-GCTTCG-GCTGG--CCTTTGC abr_U3.1_Contig8_651009,651231__ ATCTTCAGCTAACCGGCT--GTGTACTTCG-GTCAC--ACCGGAA cbb_U3.1_scaffold_6_537751,53794 ATCTTCAGCCAACTGGTT--GCGTACTTCG-GTCGC--GCTGGAA lma_U3.1_lm_SuperContig_5_v2_134 ATCTTCAGCCAACCAGTT--GTGTACTTCG-GTCGC--GCTGGAA pno_U3.1_Supercontig_1.10_491244 ATCTTCAGCCAACTGGTC--TCGTACTTCG-GTCGA--GCTGGAC bmy_U3.1_scaffold_8_458264,45854 ATCTTCAGCTGACTGGTT--GTGTACTTCG-GTCGC--ACTGGAA ptt_U3.1_Supercontig_1.1_2420652 ATCTTCAGCTGACTGGTT--GCG-ACTTCG-GTCGC--ACTGGAA abr_U3.2_Contig10_1103041,110326 ATCTTCAGCTGACTGGTT--GCG-ACTTCGTGTTGC--GCTGCGA mdu_U3.1_scaffold_6_238250,23847 ATCTCGTCCCTTTCGGTG--CTTGACTTCG-GTCGG--CTTGAAA ana_U3.1_scaffold_15_636383,6366 ATCTCGACCCTTTTGAGTGTCTG-GCTTCG-GTCGG--CTTGACT ana_U3.2_scaffold_10_356255,3564 ATCTCGACCCTTTTGAGTGTCTG-GCTTCG-GTCGG--CTTGACT aar_U3.1_scaffold_2_623118,62334 GACAGGGCGCTTGAGTGGAGGCTGACGGAC bco_U3.1_scaffold_14_641730,6420 GGGCTCGTG-GCGCTGGTTGTCTGACAGGA mpi_U3.1_scaffold_9_1682657,1682 AGGTGGGTG-GTGTCGGTCGTCTGACTGGT ztr_U3.1_chr_9_1378733,1378947_- AGGAGGGTG-CTGTCAGTCGTCTGACAGGT abr_U3.1_Contig8_651009,651231__ GGCAGGACG-TTGATGGCAATCTGACAGGC cbb_U3.1_scaffold_6_537751,53794 GGCAGGACG-TTGATGGCAATCTGACAGGT lma_U3.1_lm_SuperContig_5_v2_134 GGCAGGGTG-TTGATGGCAATCTGACAGGC pno_U3.1_Supercontig_1.10_491244 GGCAGGACG-TTGGTGGCAATCTGACAGGC bmy_U3.1_scaffold_8_458264,45854 GGCAGGACG-TTGACGGCAATCTGACAGGT ptt_U3.1_Supercontig_1.1_2420652 GGCAGGATG-TTGATGGCAATCTGACAGGC abr_U3.2_Contig10_1103041,110326 GGCAGGACG-TTGACGGCAATCTGACAGGC mdu_U3.1_scaffold_6_238250,23847 GGGTGGGCG-TTGTGGGAATTCTGACAGGT ana_U3.1_scaffold_15_636383,6366 GGGTAGGCG-CCGGCGGACTTCTGACAGGC ana_U3.2_scaffold_10_356255,3564 GGGTGGGCG-TTGGCGGACTTCTGACAGGC