CLUSTAL W (1.83) multiple sequence alignment abi_U3.1_scaffold_17_263518,2637 TTAGAACATA----------------------------------- pos_U3.1_scaffold_05_1058485,105 TTAGAACATA----------------------------------- pos_U3.2_scaffold_05_631542,6317 TTAGAACATA----------------------------------- cci_U3.2_scaffold_17_64279,64492 TCAGAACATACTCGAACAG---GTGAGTTATAGTATGGCCTTTCC cci_U3.1_scaffold_173_28928,2915 TCAGAACATA----------------------------------- sco_U3.1_scaffold_5_503574,50379 CCAGAACATA----------------------------------- sco_U3.2_scaffold_8_1062161,1062 TCAGAACATA----------------------------------- lbi_U3.2_scaffold_12_174103,1743 TTAGAACATA----------------------------------- lbi_U3.4_LG_4_3924377,3924603_-_ TTAGAACATA----------------------------------- lbi_U3.5_LG_4_4002317,4002541_-_ CCAGAACATA----------------------------------- lbi_U3.1_LG_4_3997044,3997267_-_ TCAGAACATA----------------------------------- lbi_U3.3_LG_4_3984740,3984964_-_ TCAGAACATA----------------------------------- lbi_U3.7_LG_4_4150722,4150946___ ACACTCATCA----------------------------------- lbi_U3.6_scaffold_20_477047,4772 ACACTCATCA----------------------------------- sla_U3.3_scaffold_6_338246,33847 TTAGAACATA----------------------------------- sla_U3.5_scaffold_11_128886,1291 TTAGAACATA----------------------------------- sla_U3.6_scaffold_11_132805,1330 TTAGAACATA----------------------------------- sla_U3.1_scaffold_8_2248369,2248 TCAGAACATA----------------------------------- sla_U3.4_scaffold_6_2716474,2716 TCAGAACATA----------------------------------- sla_U3.2_scaffold_6_385578,38580 TTAGAACATA----------------------------------- asb_U3.4_scaffold_14_935019,9352 TTAGAACATA----------------------------------- asb_U3.2_scaffold_14_655106,6553 TCAGAACATA----------------------------------- asb_U3.1_scaffold_4_494989,49520 TTAGAACATA----------------------------------- asb_U3.3_scaffold_4_475125,47534 TCAGAACATA----------------------------------- pch_U3.4_scaffold_1_979713,97994 TCAGAACATA----------------------------------- pch_U3.1_scaffold_16_598839,5990 TCAGAACATA----------------------------------- pch_U3.2_scaffold_4_997110,99734 TCAGAACATA----------------------------------- pch_U3.3_scaffold_16_602924,6031 TCAGAACATA----------------------------------- ppl_U3.1_scaffold_86_109773,1100 TTAGAACATA----------------------------------- ppl_U3.3_scaffold_159_130347,130 TTAGAACATA----------------------------------- ppl_U3.2_scaffold_30_415191,4154 TTAGAACATA----------------------------------- ppl_U3.4_scaffold_27_312738,3129 TCAGAACATA----------------------------------- ppl_U3.5_scaffold_147_172561,172 TCAGAACATA----------------------------------- han_U3.1_scaffold_06_619688,6199 TCAGAACATA----------------------------------- han_U3.2_scaffold_06_1978666,197 TTAGAACATA----------------------------------- han_U3.3_scaffold_06_1489084,148 CTAGAACATA----------------------------------- cvi_U3.1_scaffold_7_340585,34086 CATGATCATAC-----------GTGAGTACTCTCTTCCCCCTTGC cvi_U3.2_scaffold_3_330560,33083 CATGATCATAC-----------GTGAGTACTCTCTCCTACCCCGC cne_U3.1_adopted_3_1423435,14236 ATCGACCTTA----------------------------------- cne_U3.2_adopted_8_892818,893067 ATCGACCTTA----------------------------------- tme_U3.1_scaffold_3_32286,32531_ ATAGACCAACTTTTCAG-----GTGCGCGGGATAGCTTCTTTTTT asp_U3.1_scaffold_59_40266,40528 TCAGAACA--------------GTGCGTCCTTTCAACATGCCTCT asp_U3.2_scaffold_63_101395,1016 CCAGAACA--------------GTGCGTCCATTTTTCCCCTTTGG rmi_U3.1_scaffold_3_1260839,1261 CAAGACCAAA----------------------------------- rmi_U3.2_scaffold_4_2443971,2444 CAAGACCAAA----------------------------------- rgr_U3.1_scaffold_2_1450682,1450 TAAGACCACAC-----------GTCCGTCCACCTCCCGAACAACG rgr_U3.2_scaffold_2_1402058,1402 TAAGACCACAC-----------GTCCGTCCACCTCCCGAACAACG sro_U3.1_scaffold_5_953060,95334 CTAAGACCAACTC---------GTAAGCCCAATCTCTACTGCAAG sro_U3.2_scaffold_5_52594,52825_ TCAAGACCAACTC---------GTAAGCCCGACTCTGACCCACAA sro_U3.3_scaffold_5_41069,41313_ TCAAGACCAACTC---------GTAAGCTCGATCCTGACCCACAA ppa_U3.1 CAAGAACAAA------------GTTAGCTCTGCTCCCGTATTACC pti_U3.4_GG705418_754741,754990_ CATGACCAAA------------GTGAGCAGCGTTGCCCCCACACA psr_U3.4_Supercontig_1.14_436005 CATGACCAAA------------GTGAGCACGATTTCCTCTACCAC psr_U3.5_Supercontig_1.14_359366 --------------------------------------------- psr_U3.1_Supercontig_1.78_49588, CATGACCAAA------------GTGAGCGGCATTTCCCATACCAT psr_U3.2_Supercontig_1.56_356415 CATGACCAAA------------GTGAGTAACATTTCCCCTACCAC psr_U3.3_Supercontig_1.1_322826, CATGACCAAA------------GTAAGCAACATTTCCCTCACTCA pgr_U3.3_supercontig_2_94_165205 CATGACCAAA------------GTGAGTAGCTTCCTCCCCCCCAA pgr_U3.1_supercontig_2_8_379313, CATGACCAAA------------GTGAGTTGCAATCCCCTACCCAT pgr_U3.2_supercontig_2_8_424713, CATGACCAAA------------GTGAGTTGCATTCCCCTACCCAT pti_U3.5_GG705413_312300,312549_ CAAGACCAAA------------GTGAGTACCATCTCCCCCCCAAC pti_U3.7_GG709425_665,908_-_73.9 CATGACCAAA------------GTGAGTACCAACTCCCCACCCCA pti_U3.6_GG716129_186,418_-_81.3 CATGACCAAA------------GTGAGTACCAAGTCCCCACCCCA pti_U3.1_GG706242_703,946_-_97.8 CATGACCAAA------------GTGAGTACCATTTCCCCACCCCA pti_U3.2_GG706000_7380,7623___97 CATGACCAAA------------GTGAGTACCATTTCCCCACCCCA pti_U3.3_GG705419_1215952,121619 CATGACCAAA------------GTGAGTACCAACTCCCCGCCCCA mgl_U3.1_mgl_sf_1_2_45045,45312_ TAAGATCATA------------GTACGTATCGTAATGGGTCGCTA sre_U3.1_chromosome_3_222005,222 CAAGATCATA------------GTGAGTATCACGCCGACCCCCTA uma_U3.1_Cont_1.56_33573,33838__ CAAGATCATA------------GTGAGTACCAATCACACCCCAAC pat_U3.1_scaffold_00022 CAAGATCATA------------GTGAGTACCACTCCCGACCCCTA wse_U3.1_scaffold_15_63259,63499 CACGCAGGTA----------------------------------- wse_U3.2_scaffold_15_90061,90300 CACGCAGGTA----------------------------------- wse_U3.3_scaffold_15_76505,76744 CACGCAGGTA----------------------------------- sli_U3.1_scaffold_1_539903,54023 CCGCGCAGTA----------------------------------- abi_U3.1_scaffold_17_263518,2637 --------------------------------------------- pos_U3.1_scaffold_05_1058485,105 --------------------------------------------- pos_U3.2_scaffold_05_631542,6317 --------------------------------------------- cci_U3.2_scaffold_17_64279,64492 GTATCGCTTGATCTCTGACAGGACCTTTTAG-------------- cci_U3.1_scaffold_173_28928,2915 --------------------------------------------- sco_U3.1_scaffold_5_503574,50379 --------------------------------------------- sco_U3.2_scaffold_8_1062161,1062 --------------------------------------------- lbi_U3.2_scaffold_12_174103,1743 --------------------------------------------- lbi_U3.4_LG_4_3924377,3924603_-_ --------------------------------------------- lbi_U3.5_LG_4_4002317,4002541_-_ --------------------------------------------- lbi_U3.1_LG_4_3997044,3997267_-_ --------------------------------------------- lbi_U3.3_LG_4_3984740,3984964_-_ --------------------------------------------- lbi_U3.7_LG_4_4150722,4150946___ --------------------------------------------- lbi_U3.6_scaffold_20_477047,4772 --------------------------------------------- sla_U3.3_scaffold_6_338246,33847 --------------------------------------------- sla_U3.5_scaffold_11_128886,1291 --------------------------------------------- sla_U3.6_scaffold_11_132805,1330 --------------------------------------------- sla_U3.1_scaffold_8_2248369,2248 --------------------------------------------- sla_U3.4_scaffold_6_2716474,2716 --------------------------------------------- sla_U3.2_scaffold_6_385578,38580 --------------------------------------------- asb_U3.4_scaffold_14_935019,9352 --------------------------------------------- asb_U3.2_scaffold_14_655106,6553 --------------------------------------------- asb_U3.1_scaffold_4_494989,49520 --------------------------------------------- asb_U3.3_scaffold_4_475125,47534 --------------------------------------------- pch_U3.4_scaffold_1_979713,97994 --------------------------------------------- pch_U3.1_scaffold_16_598839,5990 --------------------------------------------- pch_U3.2_scaffold_4_997110,99734 --------------------------------------------- pch_U3.3_scaffold_16_602924,6031 --------------------------------------------- ppl_U3.1_scaffold_86_109773,1100 --------------------------------------------- ppl_U3.3_scaffold_159_130347,130 --------------------------------------------- ppl_U3.2_scaffold_30_415191,4154 --------------------------------------------- ppl_U3.4_scaffold_27_312738,3129 --------------------------------------------- ppl_U3.5_scaffold_147_172561,172 --------------------------------------------- han_U3.1_scaffold_06_619688,6199 --------------------------------------------- han_U3.2_scaffold_06_1978666,197 --------------------------------------------- han_U3.3_scaffold_06_1489084,148 --------------------------------------------- cvi_U3.1_scaffold_7_340585,34086 CGCGTTTCCTACAGAACGCTGACCTCCCTCTCTTGTCTACAG--- cvi_U3.2_scaffold_3_330560,33083 CCCTGAGCTCTCCAGCCTCGCTTCAGACCAAGATTGACTGACCTC cne_U3.1_adopted_3_1423435,14236 --------------------------------------------- cne_U3.2_adopted_8_892818,893067 --------------------------------------------- tme_U3.1_scaffold_3_32286,32531_ CCTCTTCTCTCACCCTTATCATCTCCTCCTTGCACGATCACTCTG asp_U3.1_scaffold_59_40266,40528 TGCCTGGAGTTCTCGACTGACTGCTTCCTGGGAACAGTACTTTTG asp_U3.2_scaffold_63_101395,1016 AGATGCTTGCTGATTTATCTTCGACAGTACTTTTTTCGACAG--- rmi_U3.1_scaffold_3_1260839,1261 --------------------------------------------- rmi_U3.2_scaffold_4_2443971,2444 --------------------------------------------- rgr_U3.1_scaffold_2_1450682,1450 TGCTCTCTACCGCCAAAGCCACACGTACTGACTCGTCGCACCCTC rgr_U3.2_scaffold_2_1402058,1402 TGCTCTCTACCGCCAAAGCCACACGTACTGACTCGTCGCACCCTC sro_U3.1_scaffold_5_953060,95334 CTATCCTCATTCCTTGATCGACGCTGACCTTCCTCCCCCCCTTAC sro_U3.2_scaffold_5_52594,52825_ GGTAGTTCTCGAAACGAAACTGACAATTTATGAACGTGTACACAG sro_U3.3_scaffold_5_41069,41313_ GGTAGTTCTCGAAACGAAACTGACAATTTGGGAACGTGTCTACAG ppa_U3.1 CTCTTCTCCTTTTGNCATACCCTGCGAGTTATTTTTAAAGCAGAA pti_U3.4_GG705418_754741,754990_ CCTCCTCTCACATCCTTGCCGATACGTTCCATGCTAACAACTATG psr_U3.4_Supercontig_1.14_436005 CCTTCTCCCCTCCTTCCAAATCCAAGATAACGCAATCCACTGACA psr_U3.5_Supercontig_1.14_359366 --------------------------------------------- psr_U3.1_Supercontig_1.78_49588, CCTCTTCCTTTCATCCTATCTCGGATACTCGGCAGCAACTGACCA psr_U3.2_Supercontig_1.56_356415 CCTTCTATCATCGGCCCTTTCCGAACATTGACTGACTTTTATCCC psr_U3.3_Supercontig_1.1_322826, CCTCTCACACTCCGTGGTTCCTTCACGGCACGTTCCACGATTAAC pgr_U3.3_supercontig_2_94_165205 CCTGCTTCCATCCCATCGATCACCTTCCCCGAACACAAGCTGACC pgr_U3.1_supercontig_2_8_379313, CCTCCTCCTTCCCCTCGCCTTCCCTGATTTCAAGCACCCTTCACT pgr_U3.2_supercontig_2_8_424713, CCTCCTCCTCCTTCTCCTCGCCTTCCCTGGTTTCAAGCACCCTTT pti_U3.5_GG705413_312300,312549_ CTGCACTCGCCAACGAACGCCAACTAACCACCACTCTCCCCCCTT pti_U3.7_GG709425_665,908_-_73.9 CTCCTTCCACTACGGTCGAACTGACTCACCTCTTTTCGCCGTGCT pti_U3.6_GG716129_186,418_-_81.3 CTCCTTCCACTACTGTCCAACTGACTCACCTCTTTTCGCCGTGCT pti_U3.1_GG706242_703,946_-_97.8 CTTTTTCCACTACTGCCTCCTCTCCCCATGACCGCCGCAACAGTC pti_U3.2_GG706000_7380,7623___97 CTTTTTCCACTACTGCCTCCTCTCCCCATGACCGCCGCAACAGTC pti_U3.3_GG705419_1215952,121619 CTCCTTCCACTACTGTCCAACTGACTCACCTCTGTTCGCCGTGCT mgl_U3.1_mgl_sf_1_2_45045,45312_ CTTTTCGGATTCTGACACCGCCAG--------------------- sre_U3.1_chromosome_3_222005,222 CTATCCACTCTCTCCCTCTCCGGCCCTCTTGCATCCCACCAGCAA uma_U3.1_Cont_1.56_33573,33838__ CCTTGCCCCTCCCCAATTGACCAGCTGCGCATGCGTCACAAAGTT pat_U3.1_scaffold_00022 CCTTGCGATTCCCTCCCCTTGCTCTGGCTAGTCGACATTGCTCGA wse_U3.1_scaffold_15_63259,63499 --------------------------------------------- wse_U3.2_scaffold_15_90061,90300 --------------------------------------------- wse_U3.3_scaffold_15_76505,76744 --------------------------------------------- sli_U3.1_scaffold_1_539903,54023 --------------------------------------------- abi_U3.1_scaffold_17_263518,2637 --------------------------------------------- pos_U3.1_scaffold_05_1058485,105 --------------------------------------------- pos_U3.2_scaffold_05_631542,6317 --------------------------------------------- cci_U3.2_scaffold_17_64279,64492 --------------------------------------------- cci_U3.1_scaffold_173_28928,2915 --------------------------------------------- sco_U3.1_scaffold_5_503574,50379 --------------------------------------------- sco_U3.2_scaffold_8_1062161,1062 --------------------------------------------- lbi_U3.2_scaffold_12_174103,1743 --------------------------------------------- lbi_U3.4_LG_4_3924377,3924603_-_ --------------------------------------------- lbi_U3.5_LG_4_4002317,4002541_-_ --------------------------------------------- lbi_U3.1_LG_4_3997044,3997267_-_ --------------------------------------------- lbi_U3.3_LG_4_3984740,3984964_-_ --------------------------------------------- lbi_U3.7_LG_4_4150722,4150946___ --------------------------------------------- lbi_U3.6_scaffold_20_477047,4772 --------------------------------------------- sla_U3.3_scaffold_6_338246,33847 --------------------------------------------- sla_U3.5_scaffold_11_128886,1291 --------------------------------------------- sla_U3.6_scaffold_11_132805,1330 --------------------------------------------- sla_U3.1_scaffold_8_2248369,2248 --------------------------------------------- sla_U3.4_scaffold_6_2716474,2716 --------------------------------------------- sla_U3.2_scaffold_6_385578,38580 --------------------------------------------- asb_U3.4_scaffold_14_935019,9352 --------------------------------------------- asb_U3.2_scaffold_14_655106,6553 --------------------------------------------- asb_U3.1_scaffold_4_494989,49520 --------------------------------------------- asb_U3.3_scaffold_4_475125,47534 --------------------------------------------- pch_U3.4_scaffold_1_979713,97994 --------------------------------------------- pch_U3.1_scaffold_16_598839,5990 --------------------------------------------- pch_U3.2_scaffold_4_997110,99734 --------------------------------------------- pch_U3.3_scaffold_16_602924,6031 --------------------------------------------- ppl_U3.1_scaffold_86_109773,1100 --------------------------------------------- ppl_U3.3_scaffold_159_130347,130 --------------------------------------------- ppl_U3.2_scaffold_30_415191,4154 --------------------------------------------- ppl_U3.4_scaffold_27_312738,3129 --------------------------------------------- ppl_U3.5_scaffold_147_172561,172 --------------------------------------------- han_U3.1_scaffold_06_619688,6199 --------------------------------------------- han_U3.2_scaffold_06_1978666,197 --------------------------------------------- han_U3.3_scaffold_06_1489084,148 --------------------------------------------- cvi_U3.1_scaffold_7_340585,34086 --------------------------------------------- cvi_U3.2_scaffold_3_330560,33083 GCTCTTTTTGCCTCTACAG-------------------------- cne_U3.1_adopted_3_1423435,14236 --------------------------------------------- cne_U3.2_adopted_8_892818,893067 --------------------------------------------- tme_U3.1_scaffold_3_32286,32531_ TTCACAATCTGTCTCATCTGTCTTCTCGCTCACCCGATGAATAAT asp_U3.1_scaffold_59_40266,40528 GGAACAG-------------------------------------- asp_U3.2_scaffold_63_101395,1016 --------------------------------------------- rmi_U3.1_scaffold_3_1260839,1261 --------------------------------------------- rmi_U3.2_scaffold_4_2443971,2444 --------------------------------------------- rgr_U3.1_scaffold_2_1450682,1450 CCGTCCCTCCTTGCGCACGACGCGAGCAG---------------- rgr_U3.2_scaffold_2_1402058,1402 CCGTCCCTCCTTGCGCACGACGCGAGCAG---------------- sro_U3.1_scaffold_5_953060,95334 AG------------------------------------------- sro_U3.2_scaffold_5_52594,52825_ --------------------------------------------- sro_U3.3_scaffold_5_41069,41313_ --------------------------------------------- ppa_U3.1 AATAGACATGATTACTGATTTTTAACCTTTCCAAAAATATTCTCG pti_U3.4_GG705418_754741,754990_ CCTCTCCCATCTCTCCCTCCAG----------------------- psr_U3.4_Supercontig_1.14_436005 ATTTTTTCTCTTTCGATCCGATCTGCAG----------------- psr_U3.5_Supercontig_1.14_359366 --------------------------------------------- psr_U3.1_Supercontig_1.78_49588, ATCAACTTTTCCCCAACCCCACAG--------------------- psr_U3.2_Supercontig_1.56_356415 TTTCCCACCCCACAG------------------------------ psr_U3.3_Supercontig_1.1_322826, TGACTTTCTTTCTGTCTTTCTCACATCACAG-------------- pgr_U3.3_supercontig_2_94_165205 CATTTCCCTTGTTCCCCTTATCTCCCACCCGCAG----------- pgr_U3.1_supercontig_2_8_379313, GACCCTTACCCTTTCTTCCACTCTCAG------------------ pgr_U3.2_supercontig_2_8_424713, ACTGACCCTTACCCTTTCTCCCGCCCTCAG--------------- pti_U3.5_GG705413_312300,312549_ CACCTCTCACAG--------------------------------- pti_U3.7_GG709425_665,908_-_73.9 CAG------------------------------------------ pti_U3.6_GG716129_186,418_-_81.3 CAG------------------------------------------ pti_U3.1_GG706242_703,946_-_97.8 CAACTGACTCAACTCTTTTCCCCGTGCTCAG-------------- pti_U3.2_GG706000_7380,7623___97 CAACTGACTCAACTCTTTTCCCCGTGCTCAG-------------- pti_U3.3_GG705419_1215952,121619 CAG------------------------------------------ mgl_U3.1_mgl_sf_1_2_45045,45312_ --------------------------------------------- sre_U3.1_chromosome_3_222005,222 CGACTGCAACGCTTCGCAACGCCTTGCAAGCCAGCATCGCACCGC uma_U3.1_Cont_1.56_33573,33838__ CTCATCAACACGGAGCCTGCTCATCGCGCTGGTCTCTTTCCGATC pat_U3.1_scaffold_00022 CTCCTCGAGCACGGCCGTCGGCCCATCAGCATCCCGCCTCCGCCA wse_U3.1_scaffold_15_63259,63499 --------------------------------------------- wse_U3.2_scaffold_15_90061,90300 --------------------------------------------- wse_U3.3_scaffold_15_76505,76744 --------------------------------------------- sli_U3.1_scaffold_1_539903,54023 --------------------------------------------- abi_U3.1_scaffold_17_263518,2637 --------------------------------------------- pos_U3.1_scaffold_05_1058485,105 --------------------------------------------- pos_U3.2_scaffold_05_631542,6317 --------------------------------------------- cci_U3.2_scaffold_17_64279,64492 --------------------------------------------- cci_U3.1_scaffold_173_28928,2915 --------------------------------------------- sco_U3.1_scaffold_5_503574,50379 --------------------------------------------- sco_U3.2_scaffold_8_1062161,1062 --------------------------------------------- lbi_U3.2_scaffold_12_174103,1743 --------------------------------------------- lbi_U3.4_LG_4_3924377,3924603_-_ --------------------------------------------- lbi_U3.5_LG_4_4002317,4002541_-_ --------------------------------------------- lbi_U3.1_LG_4_3997044,3997267_-_ --------------------------------------------- lbi_U3.3_LG_4_3984740,3984964_-_ --------------------------------------------- lbi_U3.7_LG_4_4150722,4150946___ --------------------------------------------- lbi_U3.6_scaffold_20_477047,4772 --------------------------------------------- sla_U3.3_scaffold_6_338246,33847 --------------------------------------------- sla_U3.5_scaffold_11_128886,1291 --------------------------------------------- sla_U3.6_scaffold_11_132805,1330 --------------------------------------------- sla_U3.1_scaffold_8_2248369,2248 --------------------------------------------- sla_U3.4_scaffold_6_2716474,2716 --------------------------------------------- sla_U3.2_scaffold_6_385578,38580 --------------------------------------------- asb_U3.4_scaffold_14_935019,9352 --------------------------------------------- asb_U3.2_scaffold_14_655106,6553 --------------------------------------------- asb_U3.1_scaffold_4_494989,49520 --------------------------------------------- asb_U3.3_scaffold_4_475125,47534 --------------------------------------------- pch_U3.4_scaffold_1_979713,97994 --------------------------------------------- pch_U3.1_scaffold_16_598839,5990 --------------------------------------------- pch_U3.2_scaffold_4_997110,99734 --------------------------------------------- pch_U3.3_scaffold_16_602924,6031 --------------------------------------------- ppl_U3.1_scaffold_86_109773,1100 --------------------------------------------- ppl_U3.3_scaffold_159_130347,130 --------------------------------------------- ppl_U3.2_scaffold_30_415191,4154 --------------------------------------------- ppl_U3.4_scaffold_27_312738,3129 --------------------------------------------- ppl_U3.5_scaffold_147_172561,172 --------------------------------------------- han_U3.1_scaffold_06_619688,6199 --------------------------------------------- han_U3.2_scaffold_06_1978666,197 --------------------------------------------- han_U3.3_scaffold_06_1489084,148 --------------------------------------------- cvi_U3.1_scaffold_7_340585,34086 --------------------------------------------- cvi_U3.2_scaffold_3_330560,33083 --------------------------------------------- cne_U3.1_adopted_3_1423435,14236 --------------------------------------------- cne_U3.2_adopted_8_892818,893067 --------------------------------------------- tme_U3.1_scaffold_3_32286,32531_ TGTCCAGCCAAGAGATTCAGACGTGGAAACCGAAGCCGGGTGGGA asp_U3.1_scaffold_59_40266,40528 --------------------------------------------- asp_U3.2_scaffold_63_101395,1016 --------------------------------------------- rmi_U3.1_scaffold_3_1260839,1261 --------------------------------------------- rmi_U3.2_scaffold_4_2443971,2444 --------------------------------------------- rgr_U3.1_scaffold_2_1450682,1450 --------------------------------------------- rgr_U3.2_scaffold_2_1402058,1402 --------------------------------------------- sro_U3.1_scaffold_5_953060,95334 --------------------------------------------- sro_U3.2_scaffold_5_52594,52825_ --------------------------------------------- sro_U3.3_scaffold_5_41069,41313_ --------------------------------------------- ppa_U3.1 AAAACAG-------------------------------------- pti_U3.4_GG705418_754741,754990_ --------------------------------------------- psr_U3.4_Supercontig_1.14_436005 --------------------------------------------- psr_U3.5_Supercontig_1.14_359366 --------------------------------------------- psr_U3.1_Supercontig_1.78_49588, --------------------------------------------- psr_U3.2_Supercontig_1.56_356415 --------------------------------------------- psr_U3.3_Supercontig_1.1_322826, --------------------------------------------- pgr_U3.3_supercontig_2_94_165205 --------------------------------------------- pgr_U3.1_supercontig_2_8_379313, --------------------------------------------- pgr_U3.2_supercontig_2_8_424713, --------------------------------------------- pti_U3.5_GG705413_312300,312549_ --------------------------------------------- pti_U3.7_GG709425_665,908_-_73.9 --------------------------------------------- pti_U3.6_GG716129_186,418_-_81.3 --------------------------------------------- pti_U3.1_GG706242_703,946_-_97.8 --------------------------------------------- pti_U3.2_GG706000_7380,7623___97 --------------------------------------------- pti_U3.3_GG705419_1215952,121619 --------------------------------------------- mgl_U3.1_mgl_sf_1_2_45045,45312_ --------------------------------------------- sre_U3.1_chromosome_3_222005,222 TTGCGCCGACTCGATCCATCTCTCACGCCCATCTACCTCTTGCCA uma_U3.1_Cont_1.56_33573,33838__ GCTCTATTCACACGTCTCCAACACCTTCCGCCTTCCGCAATCTAA pat_U3.1_scaffold_00022 TCCCCCTTTCTCGCATCCCATCCGCCTCGAACCAGCACGGATCCA wse_U3.1_scaffold_15_63259,63499 --------------------------------------------- wse_U3.2_scaffold_15_90061,90300 --------------------------------------------- wse_U3.3_scaffold_15_76505,76744 --------------------------------------------- sli_U3.1_scaffold_1_539903,54023 --------------------------------------------- abi_U3.1_scaffold_17_263518,2637 --------------------------------------------- pos_U3.1_scaffold_05_1058485,105 --------------------------------------------- pos_U3.2_scaffold_05_631542,6317 --------------------------------------------- cci_U3.2_scaffold_17_64279,64492 --------------------------------------------- cci_U3.1_scaffold_173_28928,2915 --------------------------------------------- sco_U3.1_scaffold_5_503574,50379 --------------------------------------------- sco_U3.2_scaffold_8_1062161,1062 --------------------------------------------- lbi_U3.2_scaffold_12_174103,1743 --------------------------------------------- lbi_U3.4_LG_4_3924377,3924603_-_ --------------------------------------------- lbi_U3.5_LG_4_4002317,4002541_-_ --------------------------------------------- lbi_U3.1_LG_4_3997044,3997267_-_ --------------------------------------------- lbi_U3.3_LG_4_3984740,3984964_-_ --------------------------------------------- lbi_U3.7_LG_4_4150722,4150946___ --------------------------------------------- lbi_U3.6_scaffold_20_477047,4772 --------------------------------------------- sla_U3.3_scaffold_6_338246,33847 --------------------------------------------- sla_U3.5_scaffold_11_128886,1291 --------------------------------------------- sla_U3.6_scaffold_11_132805,1330 --------------------------------------------- sla_U3.1_scaffold_8_2248369,2248 --------------------------------------------- sla_U3.4_scaffold_6_2716474,2716 --------------------------------------------- sla_U3.2_scaffold_6_385578,38580 --------------------------------------------- asb_U3.4_scaffold_14_935019,9352 --------------------------------------------- asb_U3.2_scaffold_14_655106,6553 --------------------------------------------- asb_U3.1_scaffold_4_494989,49520 --------------------------------------------- asb_U3.3_scaffold_4_475125,47534 --------------------------------------------- pch_U3.4_scaffold_1_979713,97994 --------------------------------------------- pch_U3.1_scaffold_16_598839,5990 --------------------------------------------- pch_U3.2_scaffold_4_997110,99734 --------------------------------------------- pch_U3.3_scaffold_16_602924,6031 --------------------------------------------- ppl_U3.1_scaffold_86_109773,1100 --------------------------------------------- ppl_U3.3_scaffold_159_130347,130 --------------------------------------------- ppl_U3.2_scaffold_30_415191,4154 --------------------------------------------- ppl_U3.4_scaffold_27_312738,3129 --------------------------------------------- ppl_U3.5_scaffold_147_172561,172 --------------------------------------------- han_U3.1_scaffold_06_619688,6199 --------------------------------------------- han_U3.2_scaffold_06_1978666,197 --------------------------------------------- han_U3.3_scaffold_06_1489084,148 --------------------------------------------- cvi_U3.1_scaffold_7_340585,34086 --------------------------------------------- cvi_U3.2_scaffold_3_330560,33083 --------------------------------------------- cne_U3.1_adopted_3_1423435,14236 --------------------------------------------- cne_U3.2_adopted_8_892818,893067 --------------------------------------------- tme_U3.1_scaffold_3_32286,32531_ AGACGTATGGAAGCGAAGAACTATCGCTGACCTTTCAG------- asp_U3.1_scaffold_59_40266,40528 --------------------------------------------- asp_U3.2_scaffold_63_101395,1016 --------------------------------------------- rmi_U3.1_scaffold_3_1260839,1261 --------------------------------------------- rmi_U3.2_scaffold_4_2443971,2444 --------------------------------------------- rgr_U3.1_scaffold_2_1450682,1450 --------------------------------------------- rgr_U3.2_scaffold_2_1402058,1402 --------------------------------------------- sro_U3.1_scaffold_5_953060,95334 --------------------------------------------- sro_U3.2_scaffold_5_52594,52825_ --------------------------------------------- sro_U3.3_scaffold_5_41069,41313_ --------------------------------------------- ppa_U3.1 --------------------------------------------- pti_U3.4_GG705418_754741,754990_ --------------------------------------------- psr_U3.4_Supercontig_1.14_436005 --------------------------------------------- psr_U3.5_Supercontig_1.14_359366 --------------------------------------------- psr_U3.1_Supercontig_1.78_49588, --------------------------------------------- psr_U3.2_Supercontig_1.56_356415 --------------------------------------------- psr_U3.3_Supercontig_1.1_322826, --------------------------------------------- pgr_U3.3_supercontig_2_94_165205 --------------------------------------------- pgr_U3.1_supercontig_2_8_379313, --------------------------------------------- pgr_U3.2_supercontig_2_8_424713, --------------------------------------------- pti_U3.5_GG705413_312300,312549_ --------------------------------------------- pti_U3.7_GG709425_665,908_-_73.9 --------------------------------------------- pti_U3.6_GG716129_186,418_-_81.3 --------------------------------------------- pti_U3.1_GG706242_703,946_-_97.8 --------------------------------------------- pti_U3.2_GG706000_7380,7623___97 --------------------------------------------- pti_U3.3_GG705419_1215952,121619 --------------------------------------------- mgl_U3.1_mgl_sf_1_2_45045,45312_ --------------------------------------------- sre_U3.1_chromosome_3_222005,222 TGGTTCGGTCCCACTGACTTGTCCTCGCCCATCTTCGCATTATTC uma_U3.1_Cont_1.56_33573,33838__ CCTGGTTCGGTCCCACTGACTGACTCTTTTATCGCTACCTTGGTT pat_U3.1_scaffold_00022 CTAACATCGTCGCCTTCGCCTCGCTTTCTCCCTCGCAG------- wse_U3.1_scaffold_15_63259,63499 --------------------------------------------- wse_U3.2_scaffold_15_90061,90300 --------------------------------------------- wse_U3.3_scaffold_15_76505,76744 --------------------------------------------- sli_U3.1_scaffold_1_539903,54023 --------------------------------------------- abi_U3.1_scaffold_17_263518,2637 ---------------------------CT-CGAACAGGATC-TGT pos_U3.1_scaffold_05_1058485,105 ---------------------------CT-CAGCTAGGATC-TAT pos_U3.2_scaffold_05_631542,6317 ---------------------------CT-CAGCTAGGATC-TAT cci_U3.2_scaffold_17_64279,64492 -------------------------------------GATC-TGT cci_U3.1_scaffold_173_28928,2915 ---------------------------CT-CGAACAGGATC-TGT sco_U3.1_scaffold_5_503574,50379 ---------------------------CT-CAGCTAGGATC-TTT sco_U3.2_scaffold_8_1062161,1062 ---------------------------CT-CAGCTAGGATC-TTT lbi_U3.2_scaffold_12_174103,1743 ---------------------------CT-CGAACAGGATC-TGT lbi_U3.4_LG_4_3924377,3924603_-_ ---------------------------CT-CGAACAGGATC-TGT lbi_U3.5_LG_4_4002317,4002541_-_ ---------------------------CT-CGAACAGGATC-TGT lbi_U3.1_LG_4_3997044,3997267_-_ ---------------------------CT-CGAACAGGATC-TGT lbi_U3.3_LG_4_3984740,3984964_-_ ---------------------------CT-CGAACAGGATC-TGT lbi_U3.7_LG_4_4150722,4150946___ ---------------------------CT-CGAACAGGATC-TGT lbi_U3.6_scaffold_20_477047,4772 ---------------------------CT-CGAACAGGATC-TGT sla_U3.3_scaffold_6_338246,33847 ---------------------------CT-CAGCTAGGATC-TAT sla_U3.5_scaffold_11_128886,1291 ---------------------------CT-CAGCTAGGATC-TAT sla_U3.6_scaffold_11_132805,1330 ---------------------------CT-CAGCTAGGATC-TAT sla_U3.1_scaffold_8_2248369,2248 ---------------------------CT-CAGCTAGGATC-TAT sla_U3.4_scaffold_6_2716474,2716 ---------------------------CT-CAGCTAGGATC-TAT sla_U3.2_scaffold_6_385578,38580 ---------------------------CT-CAGCTAGGATC-TAT asb_U3.4_scaffold_14_935019,9352 ---------------------------CT-CAGCTAGGATC-TAT asb_U3.2_scaffold_14_655106,6553 ---------------------------CT-CAGCTAGGATC-TAT asb_U3.1_scaffold_4_494989,49520 ---------------------------CT-CAGCTAGGATC-TAT asb_U3.3_scaffold_4_475125,47534 ---------------------------CT-CAGCTAGGATC-TAT pch_U3.4_scaffold_1_979713,97994 ---------------------------CT-CAGCTAGGATC-TAT pch_U3.1_scaffold_16_598839,5990 ---------------------------CT-CAGCTAGGATC-TAT pch_U3.2_scaffold_4_997110,99734 ---------------------------CT-CAGCTAGGATC-TAT pch_U3.3_scaffold_16_602924,6031 ---------------------------CT-CAGCTAGGATC-TAT ppl_U3.1_scaffold_86_109773,1100 ---------------------------CT-CAGCTAGGATC-TAT ppl_U3.3_scaffold_159_130347,130 ---------------------------CT-CAGCTAGGATC-TAT ppl_U3.2_scaffold_30_415191,4154 ---------------------------CT-CAGCTAGGATC-TAT ppl_U3.4_scaffold_27_312738,3129 ---------------------------CT-CAGCTAGGATC-TAT ppl_U3.5_scaffold_147_172561,172 ---------------------------CT-CAGCTAGGATC-TAT han_U3.1_scaffold_06_619688,6199 ---------------------------CT-CAGCTAGGATC-TAT han_U3.2_scaffold_06_1978666,197 ---------------------------CT-CAGCTAGGATC-TAT han_U3.3_scaffold_06_1489084,148 ---------------------------CT-CAGCTAGGATC-TAT cvi_U3.1_scaffold_7_340585,34086 ----------------------------T-CTGC-AGGATA-TAT cvi_U3.2_scaffold_3_330560,33083 ----------------------------T-CTGC-AGGATA-TAT cne_U3.1_adopted_3_1423435,14236 ---------------------------CTC-TGC-AGGATC-TCT cne_U3.2_adopted_8_892818,893067 ---------------------------CTC-TGC-AGGATC-T-C tme_U3.1_scaffold_3_32286,32531_ -------------------------------------GATT-TCT asp_U3.1_scaffold_59_40266,40528 -------------------------TACTTTTAACGGGATC-TAT asp_U3.2_scaffold_63_101395,1016 -------------------------TACTTTTA-CGGGATC-TAT rmi_U3.1_scaffold_3_1260839,1261 ---------------------------CTC-TTACAGGATC--CT rmi_U3.2_scaffold_4_2443971,2444 ---------------------------CTC-TTACAGGATC-CTT rgr_U3.1_scaffold_2_1450682,1450 ----------------------------TC-AGTCAGGATC-TCT rgr_U3.2_scaffold_2_1402058,1402 ----------------------------TC-AGTCAGGATC-TCT sro_U3.1_scaffold_5_953060,95334 -------------------------------AGTCAGGATC-TAG sro_U3.2_scaffold_5_52594,52825_ -------------------------------AGTCAGGATC-TAG sro_U3.3_scaffold_5_41069,41313_ -------------------------------AGTCAGGATC-TAG ppa_U3.1 ---------------------------CTC--TTCAGGATC-TAT pti_U3.4_GG705418_754741,754990_ ---------------------------CTC--TTCAGGATC-TAT psr_U3.4_Supercontig_1.14_436005 ---------------------------CTC--TTCAGGATC-TAT psr_U3.5_Supercontig_1.14_359366 --------------------------------------------- psr_U3.1_Supercontig_1.78_49588, ---------------------------CTC--TTCAGGATC-TAT psr_U3.2_Supercontig_1.56_356415 ---------------------------CTC--TTCAGGATC-TAT psr_U3.3_Supercontig_1.1_322826, ---------------------------CTC--TTCAGGATC-TAT pgr_U3.3_supercontig_2_94_165205 ---------------------------CTC--TTCAGGATC-TAT pgr_U3.1_supercontig_2_8_379313, ---------------------------CTC--TTCAGGATC-TAT pgr_U3.2_supercontig_2_8_424713, ---------------------------CTC--TTCAGGATC-TAT pti_U3.5_GG705413_312300,312549_ ---------------------------CTC--TTCAGGATC-TAT pti_U3.7_GG709425_665,908_-_73.9 ---------------------------CTC--TTCAGGATC-TAT pti_U3.6_GG716129_186,418_-_81.3 ---------------------------CTC--TTCAGGATC-TAT pti_U3.1_GG706242_703,946_-_97.8 ---------------------------CTC--TTCAGGATC-TAT pti_U3.2_GG706000_7380,7623___97 ---------------------------CTC--TTCAGGATC-TAT pti_U3.3_GG705419_1215952,121619 ---------------------------CTC--TTCAGGATC-TAT mgl_U3.1_mgl_sf_1_2_45045,45312_ ---------------------------CTT--TACGGAATCACTT sre_U3.1_chromosome_3_222005,222 CCTCCGCTCGCAG--------------CTT--TACGGAATCACTT uma_U3.1_Cont_1.56_33573,33838__ ACCTATTACTTCTCGCTCGCAG-----CTT--TACGGAATCACTT pat_U3.1_scaffold_00022 ---------------------------CTT--TACGGAATCACTT wse_U3.1_scaffold_15_63259,63499 ---------------------------CTC--CAAAGGATCATAT wse_U3.2_scaffold_15_90061,90300 ---------------------------CTC--CAAAGGATCATAT wse_U3.3_scaffold_15_76505,76744 ---------------------------CTC--CAAAGGATCATAT sli_U3.1_scaffold_1_539903,54023 ---------------------------CTT--TGAGGGATCAT-T abi_U3.1_scaffold_17_263518,2637 T-TACA--------------------------------------- pos_U3.1_scaffold_05_1058485,105 TCTATA--------------------------------------- pos_U3.2_scaffold_05_631542,6317 TCTATA--------------------------------------- cci_U3.2_scaffold_17_64279,64492 T-TACA--------------------------------------- cci_U3.1_scaffold_173_28928,2915 T-TACA--------------------------------------- sco_U3.1_scaffold_5_503574,50379 T-TATA--------------------------------------- sco_U3.2_scaffold_8_1062161,1062 T-TATA--------------------------------------- lbi_U3.2_scaffold_12_174103,1743 T-TACA--------------------------------------- lbi_U3.4_LG_4_3924377,3924603_-_ T-TACA--------------------------------------- lbi_U3.5_LG_4_4002317,4002541_-_ T-TACA--------------------------------------- lbi_U3.1_LG_4_3997044,3997267_-_ T-TACA--------------------------------------- lbi_U3.3_LG_4_3984740,3984964_-_ T-TACA--------------------------------------- lbi_U3.7_LG_4_4150722,4150946___ T-TACA--------------------------------------- lbi_U3.6_scaffold_20_477047,4772 T-TACA--------------------------------------- sla_U3.3_scaffold_6_338246,33847 TTTATA--------------------------------------- sla_U3.5_scaffold_11_128886,1291 TTTATA--------------------------------------- sla_U3.6_scaffold_11_132805,1330 TTTATA--------------------------------------- sla_U3.1_scaffold_8_2248369,2248 TTTATA--------------------------------------- sla_U3.4_scaffold_6_2716474,2716 TTTATA--------------------------------------- sla_U3.2_scaffold_6_385578,38580 TTTATA--------------------------------------- asb_U3.4_scaffold_14_935019,9352 T-TATA--------------------------------------- asb_U3.2_scaffold_14_655106,6553 T-TATA--------------------------------------- asb_U3.1_scaffold_4_494989,49520 T-TATA--------------------------------------- asb_U3.3_scaffold_4_475125,47534 T-TATA--------------------------------------- pch_U3.4_scaffold_1_979713,97994 TTTATA--------------------------------------- pch_U3.1_scaffold_16_598839,5990 TTTATA--------------------------------------- pch_U3.2_scaffold_4_997110,99734 TTTATA--------------------------------------- pch_U3.3_scaffold_16_602924,6031 TTTATA--------------------------------------- ppl_U3.1_scaffold_86_109773,1100 TTTATA--------------------------------------- ppl_U3.3_scaffold_159_130347,130 TTTATA--------------------------------------- ppl_U3.2_scaffold_30_415191,4154 TTTATA--------------------------------------- ppl_U3.4_scaffold_27_312738,3129 TTTATA--------------------------------------- ppl_U3.5_scaffold_147_172561,172 TTTATA--------------------------------------- han_U3.1_scaffold_06_619688,6199 TCTATA--------------------------------------- han_U3.2_scaffold_06_1978666,197 TCTATA--------------------------------------- han_U3.3_scaffold_06_1489084,148 TCTATA--------------------------------------- cvi_U3.1_scaffold_7_340585,34086 T-TGCA--------------------------------------- cvi_U3.2_scaffold_3_330560,33083 T-TGCA--------------------------------------- cne_U3.1_adopted_3_1423435,14236 G-TATA--------------------------------------- cne_U3.2_adopted_8_892818,893067 TGTATA--------------------------------------- tme_U3.1_scaffold_3_32286,32531_ G-TATA--------------------------------------- asp_U3.1_scaffold_59_40266,40528 T-TAAA--------------------------------------- asp_U3.2_scaffold_63_101395,1016 T-TAAA--------------------------------------- rmi_U3.1_scaffold_3_1260839,1261 T-TATA--------------------------------------- rmi_U3.2_scaffold_4_2443971,2444 T--ATA--------------------------------------- rgr_U3.1_scaffold_2_1450682,1450 T-TACA----GTGCGTCCTCCCTCCCTCTCCTCCCCCTCCCCCTC rgr_U3.2_scaffold_2_1402058,1402 T-TACA----GTGCGTCCTCCCTCCCTCTCCTCCCCCTCCCCCTC sro_U3.1_scaffold_5_953060,95334 T-TATA--------------------------------------- sro_U3.2_scaffold_5_52594,52825_ T-TATA--------------------------------------- sro_U3.3_scaffold_5_41069,41313_ T-TATA--------------------------------------- ppa_U3.1 T-TACA--------------------------------------- pti_U3.4_GG705418_754741,754990_ T-TACA--------------------------------------- psr_U3.4_Supercontig_1.14_436005 T-TACA--------------------------------------- psr_U3.5_Supercontig_1.14_359366 --------------------------------------------- psr_U3.1_Supercontig_1.78_49588, T-TACA--------------------------------------- psr_U3.2_Supercontig_1.56_356415 T-TACA--------------------------------------- psr_U3.3_Supercontig_1.1_322826, T-TACA--------------------------------------- pgr_U3.3_supercontig_2_94_165205 T-TACA--------------------------------------- pgr_U3.1_supercontig_2_8_379313, T-TACA--------------------------------------- pgr_U3.2_supercontig_2_8_424713, T-TACA--------------------------------------- pti_U3.5_GG705413_312300,312549_ T-TACA--------------------------------------- pti_U3.7_GG709425_665,908_-_73.9 T-TACA--------------------------------------- pti_U3.6_GG716129_186,418_-_81.3 T-TACA--------------------------------------- pti_U3.1_GG706242_703,946_-_97.8 T-TACA--------------------------------------- pti_U3.2_GG706000_7380,7623___97 T-TACA--------------------------------------- pti_U3.3_GG705419_1215952,121619 T-TACA--------------------------------------- mgl_U3.1_mgl_sf_1_2_45045,45312_ AATAAA--------------------------------------- sre_U3.1_chromosome_3_222005,222 AATAAA--------------------------------------- uma_U3.1_Cont_1.56_33573,33838__ AATAAA--------------------------------------- pat_U3.1_scaffold_00022 AATAAA--------------------------------------- wse_U3.1_scaffold_15_63259,63499 TCTATA--------------------------------------- wse_U3.2_scaffold_15_90061,90300 TCTATA--------------------------------------- wse_U3.3_scaffold_15_76505,76744 TCTATA--------------------------------------- sli_U3.1_scaffold_1_539903,54023 T-TAT------GTGCGTTCGCGCTGGAACCGCGACCGCCCGCTGA abi_U3.1_scaffold_17_263518,2637 --------------------------------------------- pos_U3.1_scaffold_05_1058485,105 --------------------------------------------- pos_U3.2_scaffold_05_631542,6317 --------------------------------------------- cci_U3.2_scaffold_17_64279,64492 --------------------------------------------- cci_U3.1_scaffold_173_28928,2915 --------------------------------------------- sco_U3.1_scaffold_5_503574,50379 --------------------------------------------- sco_U3.2_scaffold_8_1062161,1062 --------------------------------------------- lbi_U3.2_scaffold_12_174103,1743 --------------------------------------------- lbi_U3.4_LG_4_3924377,3924603_-_ --------------------------------------------- lbi_U3.5_LG_4_4002317,4002541_-_ --------------------------------------------- lbi_U3.1_LG_4_3997044,3997267_-_ --------------------------------------------- lbi_U3.3_LG_4_3984740,3984964_-_ --------------------------------------------- lbi_U3.7_LG_4_4150722,4150946___ --------------------------------------------- lbi_U3.6_scaffold_20_477047,4772 --------------------------------------------- sla_U3.3_scaffold_6_338246,33847 --------------------------------------------- sla_U3.5_scaffold_11_128886,1291 --------------------------------------------- sla_U3.6_scaffold_11_132805,1330 --------------------------------------------- sla_U3.1_scaffold_8_2248369,2248 --------------------------------------------- sla_U3.4_scaffold_6_2716474,2716 --------------------------------------------- sla_U3.2_scaffold_6_385578,38580 --------------------------------------------- asb_U3.4_scaffold_14_935019,9352 --------------------------------------------- asb_U3.2_scaffold_14_655106,6553 --------------------------------------------- asb_U3.1_scaffold_4_494989,49520 --------------------------------------------- asb_U3.3_scaffold_4_475125,47534 --------------------------------------------- pch_U3.4_scaffold_1_979713,97994 --------------------------------------------- pch_U3.1_scaffold_16_598839,5990 --------------------------------------------- pch_U3.2_scaffold_4_997110,99734 --------------------------------------------- pch_U3.3_scaffold_16_602924,6031 --------------------------------------------- ppl_U3.1_scaffold_86_109773,1100 --------------------------------------------- ppl_U3.3_scaffold_159_130347,130 --------------------------------------------- ppl_U3.2_scaffold_30_415191,4154 --------------------------------------------- ppl_U3.4_scaffold_27_312738,3129 --------------------------------------------- ppl_U3.5_scaffold_147_172561,172 --------------------------------------------- han_U3.1_scaffold_06_619688,6199 --------------------------------------------- han_U3.2_scaffold_06_1978666,197 --------------------------------------------- han_U3.3_scaffold_06_1489084,148 --------------------------------------------- cvi_U3.1_scaffold_7_340585,34086 --------------------------------------------- cvi_U3.2_scaffold_3_330560,33083 --------------------------------------------- cne_U3.1_adopted_3_1423435,14236 --------------------------------------------- cne_U3.2_adopted_8_892818,893067 --------------------------------------------- tme_U3.1_scaffold_3_32286,32531_ --------------------------------------------- asp_U3.1_scaffold_59_40266,40528 --------------------------------------------- asp_U3.2_scaffold_63_101395,1016 --------------------------------------------- rmi_U3.1_scaffold_3_1260839,1261 --------------------------------------------- rmi_U3.2_scaffold_4_2443971,2444 --------------------------------------------- rgr_U3.1_scaffold_2_1450682,1450 GACCAGGACGCAAAGAGCTGACGTGTGCCGCGCTCGTACAG---- rgr_U3.2_scaffold_2_1402058,1402 GACCAGGACGCAAAGAGCTGACGTGTGCCGCGCTCGTACAG---- sro_U3.1_scaffold_5_953060,95334 --------------------------------------------- sro_U3.2_scaffold_5_52594,52825_ --------------------------------------------- sro_U3.3_scaffold_5_41069,41313_ --------------------------------------------- ppa_U3.1 --------------------------------------------- pti_U3.4_GG705418_754741,754990_ --------------------------------------------- psr_U3.4_Supercontig_1.14_436005 --------------------------------------------- psr_U3.5_Supercontig_1.14_359366 --------------------------------------------- psr_U3.1_Supercontig_1.78_49588, --------------------------------------------- psr_U3.2_Supercontig_1.56_356415 --------------------------------------------- psr_U3.3_Supercontig_1.1_322826, --------------------------------------------- pgr_U3.3_supercontig_2_94_165205 --------------------------------------------- pgr_U3.1_supercontig_2_8_379313, --------------------------------------------- pgr_U3.2_supercontig_2_8_424713, --------------------------------------------- pti_U3.5_GG705413_312300,312549_ --------------------------------------------- pti_U3.7_GG709425_665,908_-_73.9 --------------------------------------------- pti_U3.6_GG716129_186,418_-_81.3 --------------------------------------------- pti_U3.1_GG706242_703,946_-_97.8 --------------------------------------------- pti_U3.2_GG706000_7380,7623___97 --------------------------------------------- pti_U3.3_GG705419_1215952,121619 --------------------------------------------- mgl_U3.1_mgl_sf_1_2_45045,45312_ --------------------------------------------- sre_U3.1_chromosome_3_222005,222 --------------------------------------------- uma_U3.1_Cont_1.56_33573,33838__ --------------------------------------------- pat_U3.1_scaffold_00022 --------------------------------------------- wse_U3.1_scaffold_15_63259,63499 --------------------------------------------- wse_U3.2_scaffold_15_90061,90300 --------------------------------------------- wse_U3.3_scaffold_15_76505,76744 --------------------------------------------- sli_U3.1_scaffold_1_539903,54023 CGGCTCGCGCAG--------------------------------A abi_U3.1_scaffold_17_263518,2637 GAAACTGACCG-------AGTCCT-GCATTTTTA--AAAATGCCA pos_U3.1_scaffold_05_1058485,105 GAAACTAACTC------GAGTCTC-GCATGTTTT--CACATGCCA pos_U3.2_scaffold_05_631542,6317 GAAACTAACTC------GAGTCTC-GCATGTTTA--CACATGCCA cci_U3.2_scaffold_17_64279,64492 GAAACTGACCG-------AGTCTC-GCATTTTTA--CAAATGCCG cci_U3.1_scaffold_173_28928,2915 GAAACTGACCG-------AGTCTC-GCATTTTTA--CAAATGCCG sco_U3.1_scaffold_5_503574,50379 GGTTCTAACCG-------AGTTTC-GCACATTTA--CATGTGCCG sco_U3.2_scaffold_8_1062161,1062 GGTTCTAACCG-------AGTTTC-GCACATTTA--CATGTGCCG lbi_U3.2_scaffold_12_174103,1743 GAAACTGACCG-------AGTCTC-GCATTTTTA--CAAATGCCG lbi_U3.4_LG_4_3924377,3924603_-_ GAAACTGACCG-------AGTCTC-GCATTTTTA--CAAATGCCG lbi_U3.5_LG_4_4002317,4002541_-_ GAAACTGACCG-------AGTCTC-GCATTTTTA--CAAATGCCG lbi_U3.1_LG_4_3997044,3997267_-_ GAAACTGACCG-------AGTCTC-GCATTTTTA--TAAATGCCG lbi_U3.3_LG_4_3984740,3984964_-_ GAAACTGACCG-------AGTCTC-GCATTTTTA--CAAATGCCG lbi_U3.7_LG_4_4150722,4150946___ GAAGCTGACCC-------AGTCTT-GCATTTTTA--CAAATGCCG lbi_U3.6_scaffold_20_477047,4772 GAAACTGACCC------GAGTCTC-GCATTTTTA--CAAATGCCG sla_U3.3_scaffold_6_338246,33847 GAAACTAACTC------GAGTCTC-GCATGTTTA--CACATGCCG sla_U3.5_scaffold_11_128886,1291 GAAACTAACTC------GAGTCTC-GCATGTTTA--CACATGCCG sla_U3.6_scaffold_11_132805,1330 GAAACTAACTC------GAGTCTC-GCATGTTTA--CACATGCCG sla_U3.1_scaffold_8_2248369,2248 GAAACTAACTC------GAGTCTC-GCATGTTTA--CACATGCCG sla_U3.4_scaffold_6_2716474,2716 GAAACTAACTC------GAGTCTC-GCATGTTTA--CTCATGCCG sla_U3.2_scaffold_6_385578,38580 GAAACTAACTC------GAGTCTC-GCATGTTTA--CACATGCCG asb_U3.4_scaffold_14_935019,9352 GAAACTAACTG------TAGTCTT-GCGCACTCA--AACGTGCCG asb_U3.2_scaffold_14_655106,6553 GAAACTAACTG------CAGTCTC-GCGCACTCA--AACGTGCCG asb_U3.1_scaffold_4_494989,49520 GAAACTAACTG------CAGTCTC-GCGCACTCA--AACGTGCCG asb_U3.3_scaffold_4_475125,47534 GAAACTAACTG------CAGTCTC-GCGCACTCA--AACGTGCCG pch_U3.4_scaffold_1_979713,97994 GTTTCTAACTC------GAGTCTC-GCATGTTTA--CACATGCCA pch_U3.1_scaffold_16_598839,5990 GTTTCTAACTC------GAGTCTC-GCATGTTTA--CACATGCCA pch_U3.2_scaffold_4_997110,99734 GTTTCTAACTC------GAGTCTC-GCATGTTTA--CACATGCCA pch_U3.3_scaffold_16_602924,6031 GTTTCTAACTC------GAGTCTC-GCATGTTTA--CACATGCCA ppl_U3.1_scaffold_86_109773,1100 GGTACTAACTC------GAGTCTC-GCATGTTTA--CACATGCCA ppl_U3.3_scaffold_159_130347,130 GGTACTAACTC------GAGTCTC-GCATGTTTA--CACATGCCA ppl_U3.2_scaffold_30_415191,4154 GGTACTAACTC------GAGTCTC-GCATGTTTA--CACATGCCA ppl_U3.4_scaffold_27_312738,3129 GGTACTAACTC------GAGCCTC-GCATGTTTA--CACATGCCA ppl_U3.5_scaffold_147_172561,172 GGTACTAACTC------GAGTCTC-GCATGTTTA--CACATGCCA han_U3.1_scaffold_06_619688,6199 GAAACTAACTC------GAGTCTC-GCATGTTTA--CACATGCCA han_U3.2_scaffold_06_1978666,197 GAAACTAACTC------GAGTCTC-GCATGTTTA--CACATGCCA han_U3.3_scaffold_06_1489084,148 GAAACTAACTC------GAGTCTC-GCATGTTTA--CACATGCCA cvi_U3.1_scaffold_7_340585,34086 GTAGCTAACTG--------ATCTC-GCTTGTTTA--CTCAAGCCA cvi_U3.2_scaffold_3_330560,33083 GTAGCTAACTG--------ATCTC-GCTTGTTTA--CTCAAGCCA cne_U3.1_adopted_3_1423435,14236 GTAATCGTTCT---------TTTTTGCTAGTCCA--CACTAGCCA cne_U3.2_adopted_8_892818,893067 GTAATCGTTCT---------TTTTTGCTAGTCCA--CACTAGCCA tme_U3.1_scaffold_3_32286,32531_ GTTATCGTCTC--------GTCTTTGCTAGTCCA--CACTAGCGA asp_U3.1_scaffold_59_40266,40528 GTAGATTTCCA-------TGTTCT-GCTTGCTCA--AGCAAGCCA asp_U3.2_scaffold_63_101395,1016 GTAGATTTCCA-------TGTTCT-GCTTGCTCA--AGCAAGCCA rmi_U3.1_scaffold_3_1260839,1261 GGAAACTTCCG--AGATTTGTCTA-GCTAATCTA--CATTAGCCA rmi_U3.2_scaffold_4_2443971,2444 GGAAACTTCCG--AGATTTGTCTA-GCTAATCTA--CATTAGCCA rgr_U3.1_scaffold_2_1450682,1450 GTTATTCTCCG----AGTTGTCTT-GCTCTCTCA--AAAGAGCTA rgr_U3.2_scaffold_2_1402058,1402 GTTATTCTCCG----AGTTGTCTT-GCTCTCTCA--AAAGAGCTA sro_U3.1_scaffold_5_953060,95334 GTTTCTCTCTG-----GTTGTCTTGCTCCTTTCA--AACGAGCTA sro_U3.2_scaffold_5_52594,52825_ GTTTCTCTCTG-----GTTGTCTTGCTCCTTTCA--AACGAGCTA sro_U3.3_scaffold_5_41069,41313_ GTTTCTCTCTG-----GTTGTCTTGCTCCTTTCA--AACGAGCTA ppa_U3.1 GTAGATACCCTATTTGTTAGTCTC-ACTCGCTCA--AAAGAGCCA pti_U3.4_GG705418_754741,754990_ GTAGATACCCGA-TCGTTTGTCTC-ACTAGCTCA--ATTGAGCCA psr_U3.4_Supercontig_1.14_436005 GTAGACACCCGA-TCGTTTGTCTC-ACTAGCTCA--ATCGAGCCA psr_U3.5_Supercontig_1.14_359366 --------CCGA-TCGTTTGTCTC-ACTAGCTCA--ATCGAGCCA psr_U3.1_Supercontig_1.78_49588, GTAGATACCCGA-TCGTTTGTCTC-ACTAGCTCA--ATCGAGCCA psr_U3.2_Supercontig_1.56_356415 GTAGATACCCGA-TCGTTTGTCTC-ACTAGCTCA--ATTGAGCCA psr_U3.3_Supercontig_1.1_322826, GTAGATACCCGA-TCGTTTGTCTC-ACTAGCTCA--ATTGAGCCA pgr_U3.3_supercontig_2_94_165205 GTAGATACCCGA-TCGTTTGTCTC-ACTAGCTCA--ACCGAGCCA pgr_U3.1_supercontig_2_8_379313, GTAGATACCCGA-TCGTTTGTCTC-ACTAGCTCA--ACCGAGCCA pgr_U3.2_supercontig_2_8_424713, GTAGATACCCGA-TCGTTTGTCTC-ACTAGCTCA--ACCGAGCCA pti_U3.5_GG705413_312300,312549_ GTAGATACCCGA-TCGTTTGTCTC-ACTAGCTCA--ATTGAGCCA pti_U3.7_GG709425_665,908_-_73.9 GTAGATACCCAA-TTGTTTGTCTC-ACTAGCTCA--ATTGAGCCA pti_U3.6_GG716129_186,418_-_81.3 GTAGATACCCGA-TTGTTTGTCTC-ACTAGCTCA--ATTGAGCCA pti_U3.1_GG706242_703,946_-_97.8 GTAGATACCCGA-TCGTTTGTCTC-ACTAGCTCA--ATCGAGCCA pti_U3.2_GG706000_7380,7623___97 GTAGATACCCGA-TCGTTTGTCTC-ACTAGCTCA--ATCGAGCCA pti_U3.3_GG705419_1215952,121619 GTAGATACCCGA-TCGTTTGTCTC-ACTAGCTCA--ATCGAGCCA mgl_U3.1_mgl_sf_1_2_45045,45312_ GTCGATAACCG--------GATCTTTCGTGCTCAAACGCATGTCA sre_U3.1_chromosome_3_222005,222 GTCGATTTCCG---------ATTCTACATGCTCAATTGCATGTCA uma_U3.1_Cont_1.56_33573,33838__ GTCGATTTCCG---------ATTCTACATGCTCAATTGCATGTCA pat_U3.1_scaffold_00022 GTCGATATCCG---------ATTCTACATGCTCAATTGCATGTCA wse_U3.1_scaffold_15_63259,63499 GGACGTATCCA--------GTCTCTGCAGATTTA--ATTCTGCCA wse_U3.2_scaffold_15_90061,90300 GGACGTATCCA--------GTCTCTGCAGATTTA--ATTCTGCCA wse_U3.3_scaffold_15_76505,76744 GGACGTATCCA--------GTCTCTGCAGATTTA--ATTCTGCCA sli_U3.1_scaffold_1_539903,54023 GTGACCTTCCG------ACGTCTTTGCACTCT----AACGAGTCG abi_U3.1_scaffold_17_263518,2637 TGCT---CTTCATATCCAACCGATGACTTC---CG---------- pos_U3.1_scaffold_05_1058485,105 CTTC----TTCAAGTCCACTCGATGA------------------- pos_U3.2_scaffold_05_631542,6317 CTTC----TTCAAGTCCACTCGATGATATG--------------- cci_U3.2_scaffold_17_64279,64492 CATC----TTCATATCCACTCGATGACATA--------------- cci_U3.1_scaffold_173_28928,2915 CATC----TTCATATCCACTCGATGA------------------- sco_U3.1_scaffold_5_503574,50379 CTTC---TCTCAAATCCAGGCGATGACACC--------------- sco_U3.2_scaffold_8_1062161,1062 CTTC---TCTCAAATCCAGGCGATGACGCT--------------- lbi_U3.2_scaffold_12_174103,1743 CATC----TTCAAATCCACTCGATGA------------------- lbi_U3.4_LG_4_3924377,3924603_-_ CATC----TTCATATCCACTCGATGAC------------------ lbi_U3.5_LG_4_4002317,4002541_-_ CATC----TTCATATCCACTCGATGA------------------- lbi_U3.1_LG_4_3997044,3997267_-_ CATC----TTCATATCCACTCGATGA------------------- lbi_U3.3_LG_4_3984740,3984964_-_ CATC----TTCATATCCACTCGATGA------------------- lbi_U3.7_LG_4_4150722,4150946___ CATC----TTCATATCCACTGGATGACTTG--------------- lbi_U3.6_scaffold_20_477047,4772 GATC----TTCATATCCACTGGATGA------------------- sla_U3.3_scaffold_6_338246,33847 CATC---CCTCAAATCCAGTCGATGATACG--------------- sla_U3.5_scaffold_11_128886,1291 CATC---CTTCAAATCCAGTGGATGATAGA--------------- sla_U3.6_scaffold_11_132805,1330 CATC---CTTCAAATCCAGTGGATGATAGA--------------- sla_U3.1_scaffold_8_2248369,2248 CATC---CTTCAGATCCAGTCGATGATATA--------------- sla_U3.4_scaffold_6_2716474,2716 CATC---CTTCAAATCCAGTCGATGATATA--------------- sla_U3.2_scaffold_6_385578,38580 CATC---CTTCAAATCCAGTCGATGATACG--------------- asb_U3.4_scaffold_14_935019,9352 CAAT---CTTCACATCCACTCGATGACAT---------------- asb_U3.2_scaffold_14_655106,6553 CATT---CTTCACATCCACTCGATGACAT---------------- asb_U3.1_scaffold_4_494989,49520 CATT---CTTCACATCCACTCGATGACAT---------------- asb_U3.3_scaffold_4_475125,47534 CATT---CTTCACATCCACTCGATGACAT---------------- pch_U3.4_scaffold_1_979713,97994 CATC---CTTCAAGTCCAGTCGATGA------------------- pch_U3.1_scaffold_16_598839,5990 CATC---CTTCAAATCCAGTCGATGA------------------- pch_U3.2_scaffold_4_997110,99734 CATC---CTTCAAATCCAGTCGATGA------------------- pch_U3.3_scaffold_16_602924,6031 CATC---CTTCAAATCCAGTCGATGA------------------- ppl_U3.1_scaffold_86_109773,1100 CATC---CTTCAAATCCAGTCGATGA------------------- ppl_U3.3_scaffold_159_130347,130 CATC---CTTCAAATCCAGTCGATGA------------------- ppl_U3.2_scaffold_30_415191,4154 CATC---CTTCATATCCAGTCGATGA------------------- ppl_U3.4_scaffold_27_312738,3129 CATC---CTTCAAATCCAGTCGATGA------------------- ppl_U3.5_scaffold_147_172561,172 CATC---CTTCAAATCCAGTCGATGA------------------- han_U3.1_scaffold_06_619688,6199 CATC---CTTCAAATCCAGTAGATGA------------------- han_U3.2_scaffold_06_1978666,197 CATC---CTTCAAATCCAGTCGATGATCAT--------------- han_U3.3_scaffold_06_1489084,148 CATC---CTTCAAATCCAGTCGATGA------------------- cvi_U3.1_scaffold_7_340585,34086 CATA--AGCTTTAACCCAGCTGATGACCAA---AA---------- cvi_U3.2_scaffold_3_330560,33083 CATA--AGCTTTAACCCAGCTGATGACCAAAA------------- cne_U3.1_adopted_3_1423435,14236 CATT---TTCCACGTCGAGGGGATGATCTA-----G--------- cne_U3.2_adopted_8_892818,893067 CATT---TTCCACGTCGAGGGGATGATCTA-----G--------- tme_U3.1_scaffold_3_32286,32531_ CAAA---TTCCACGTCGAGGTGATGATCAC--------------- asp_U3.1_scaffold_59_40266,40528 CAAT---CTCCACCCTC-GATGATGATGGA--------------- asp_U3.2_scaffold_63_101395,1016 CAAT---CTCCACCCTC-GAAGATGAGGTA--G------------ rmi_U3.1_scaffold_3_1260839,1261 CATCAAACTACGACTCTTGATGAGGACAAA--------------- rmi_U3.2_scaffold_4_2443971,2444 CATCAAACTACGGCTCTTGATGAGGGCAAA----G---------- rgr_U3.1_scaffold_2_1450682,1450 CACT---GTTTGCAGGT-CGCGATGAGCGACAGGT---------- rgr_U3.2_scaffold_2_1402058,1402 CACT---GTTTGCAGGT-CGCGATGAGCGACAGGT---------- sro_U3.1_scaffold_5_953060,95334 CACT---GTTTACGGGC-CACGATGAAGTA--------------- sro_U3.2_scaffold_5_52594,52825_ CACT---GTTTACGGGC-CACGATGAACAA--------------- sro_U3.3_scaffold_5_41069,41313_ CACT---GTTTACGGGC-CACGATGAACAACGAGG---------- ppa_U3.1 CAGT---GTTACCGAGT-GTTGATGAGTTN--------------- pti_U3.4_GG705418_754741,754990_ CAGT---GTTTACGAGT-GTTGATGATTCA--A------------ psr_U3.4_Supercontig_1.14_436005 CAGT---GTTTATAAGT-GTTGATGATGTGAA------------- psr_U3.5_Supercontig_1.14_359366 CAGT---GTTTATAAGT-GTTGATGATGTGAA------------- psr_U3.1_Supercontig_1.78_49588, CAGT---GTTTATAAGT-GTTGATGATTTG--------------- psr_U3.2_Supercontig_1.56_356415 CAGT---GTTTATAAGT-GTTGATGATTTA--------------- psr_U3.3_Supercontig_1.1_322826, CAGT---GTTTATAAGT-GTTGATGATTCG--------------- pgr_U3.3_supercontig_2_94_165205 CAGT---GTTTATAAGT-GATGATGATCCG--------------- pgr_U3.1_supercontig_2_8_379313, CAGT---GTTTATAAGT-GACGATGATTCG--------------- pgr_U3.2_supercontig_2_8_424713, CAGT---GTTTATAAGT-GACGATGATTCG--------------- pti_U3.5_GG705413_312300,312549_ CAGT---GTTTCTAAGT-GACGATGATTCG--------------- pti_U3.7_GG709425_665,908_-_73.9 CAGT---GTTTCTAAGT-GACGATGATTCG--------------- pti_U3.6_GG716129_186,418_-_81.3 CAGT---GTTTCTAAGT-GACGATGATTCG--------------- pti_U3.1_GG706242_703,946_-_97.8 CAGT---GTTTATAAGT-GACGATGATTCG--------------- pti_U3.2_GG706000_7380,7623___97 CAGT---GTTTATAAGT-GACGATGATTCG--------------- pti_U3.3_GG705419_1215952,121619 CAGT---GTTTATAAGT-GACGATGATTCG--------------- mgl_U3.1_mgl_sf_1_2_45045,45312_ CAT----ATTTCAGTCTAGTCGATGAAACC--CGGACGTTTTGGC sre_U3.1_chromosome_3_222005,222 CCTT---ATTCA-GTCTAGTAGATGAAACCCGAG----------- uma_U3.1_Cont_1.56_33573,33838__ CCTT---ATTCA-GTCTAGTAGATGAAAAC--CGAG--------- pat_U3.1_scaffold_00022 CCTT---ATTCA-ATCTAGTAGATGAAACC--CGAG--------- wse_U3.1_scaffold_15_63259,63499 CTTT---ATCATTGGCTCGAAGATGACTGA--------------- wse_U3.2_scaffold_15_90061,90300 CTTT---ATCATTGGCTCGAAGATGACTGA--CAG---------- wse_U3.3_scaffold_15_76505,76744 CTTT---ATCATTGGCTCGAAGATGACTGA--CAG---------- sli_U3.1_scaffold_1_539903,54023 CATC---CTTAACGCCC-GTTGATGACACG--------------- abi_U3.1_scaffold_17_263518,2637 ------CGCT-----CTCTCGTCATAACC----GAGAACA----- pos_U3.1_scaffold_05_1058485,105 ------CCTTCGCGCTCGCCCGTATGACT----GAGAACA----- pos_U3.2_scaffold_05_631542,6317 ----------CGCGCTCGTCCGTATGACT----GAGAACA----- cci_U3.2_scaffold_17_64279,64492 ----------CGCGCTCTCTCGTTATACT----GAGAACA----- cci_U3.1_scaffold_173_28928,2915 ------CATTAGCGCTCACTCGTTATACC----GAGAACA----- sco_U3.1_scaffold_5_503574,50379 -----------GCGCTCGCTCGTTCGACG----GAGAACA----- sco_U3.2_scaffold_8_1062161,1062 -----------GCACCCGCTCGTTCGACG----GAGAACA----- lbi_U3.2_scaffold_12_174103,1743 ------CCTCCGCGCTGCCTCGTTATACC----GAGAACA----- lbi_U3.4_LG_4_3924377,3924603_-_ ------TTTACGCGCTCACTCGTTATACT----GAGAACA----- lbi_U3.5_LG_4_4002317,4002541_-_ ------CTTCCGCGCTCACCCGTTATACC----GAGAATA----- lbi_U3.1_LG_4_3997044,3997267_-_ ------CTTCCGCGCTCACTCGTTATACC----GAGAACA----- lbi_U3.3_LG_4_3984740,3984964_-_ ------CTTCCGCGCTCACTCGTTATACC----GAGAATA----- lbi_U3.7_LG_4_4150722,4150946___ ----------TTTGCTCACTTGTTATACC----GAGAACA----- lbi_U3.6_scaffold_20_477047,4772 ------CTTCAATGCTCACTTGTTATAAC----GAGAACA----- sla_U3.3_scaffold_6_338246,33847 ----------AGCGCTCTCCCGTTCAACA----GAGAACA----- sla_U3.5_scaffold_11_128886,1291 ----------AGCGCTGCCTCGTTCGACA----GAGAACA----- sla_U3.6_scaffold_11_132805,1330 ----------AGCGCTGCCTCGTTCGACA----GAGAACA----- sla_U3.1_scaffold_8_2248369,2248 ----------AGCGCTGCCTCGTTCAACA----GAGAACA----- sla_U3.4_scaffold_6_2716474,2716 ----------AGCGCTACCTCGTTCAACA----GAGAACA----- sla_U3.2_scaffold_6_385578,38580 ----------AGCGCTCTCCCGTTCAACA----GAGAACA----- asb_U3.4_scaffold_14_935019,9352 ------CTCCCGCACCCTGCTTTAGCA------GAGAACA----- asb_U3.2_scaffold_14_655106,6553 ------CGCCCGCACCCTGCTTTAGCA------GAGAACA----- asb_U3.1_scaffold_4_494989,49520 ------CGCCCGCACCCTGCTTTAGCA------GAGAACA----- asb_U3.3_scaffold_4_475125,47534 ------CGCCCGCACCCTGCTTTAGCA------GAGAACA----- pch_U3.4_scaffold_1_979713,97994 ------CAATCGCGTCCGCCCGTCATACC----GAGCACA----- pch_U3.1_scaffold_16_598839,5990 ------CAATCGCGTTCGCCCGTCATACC----GAGCACA----- pch_U3.2_scaffold_4_997110,99734 ------CAATCGCGTTCGCCCGTCATACC----GAGCACA----- pch_U3.3_scaffold_16_602924,6031 ------CAATCGCGTTCGCCCGTCATACC----GAGCACA----- ppl_U3.1_scaffold_86_109773,1100 ------CATTCGCGTCCACTCGTCATACC----GAGAACA----- ppl_U3.3_scaffold_159_130347,130 ------CATCCGCGTCCACTCGTCATACC----GAGAACA----- ppl_U3.2_scaffold_30_415191,4154 ------CGTCCGCGCCCGCTCGTTATACC----GAGAACA----- ppl_U3.4_scaffold_27_312738,3129 ------CACCCGCGCCCGCTCGTTATACT----GAGCACC----- ppl_U3.5_scaffold_147_172561,172 ------CACCCGCGCCCGCTCGTTATACT----GAGCACA----- han_U3.1_scaffold_06_619688,6199 ------CTATCGCGCGCACTCGTTTTACC----GAGAAC------ han_U3.2_scaffold_06_1978666,197 ----------CGCGCTCACTCGTTTTACT----GAGAACA----- han_U3.3_scaffold_06_1489084,148 ------CATCCATGTCCCCTCGTTCAACT----GAGAACA----- cvi_U3.1_scaffold_7_340585,34086 ------CATTCGTAGCGCCCTGTTTA-------GGAAACTAAACT cvi_U3.2_scaffold_3_330560,33083 ------CCTTCGTAGCGCCCTGTTTA-------GGAAACTAAACT cne_U3.1_adopted_3_1423435,14236 -----TCACCCGCTTCGCTCTTTCACAGA----GGCATT------ cne_U3.2_adopted_8_892818,893067 -----TTACCCGCTCCGCTCTCTCACAGA----GGCATT------ tme_U3.1_scaffold_3_32286,32531_ ------CCCCCGCTCCGCTCTCTCACA------GAGGCC------ asp_U3.1_scaffold_59_40266,40528 ----------GAAACTCGTATCCCTTTTAAAGTGAGGTC------ asp_U3.2_scaffold_63_101395,1016 -----------AAGCTCGCATCCCTTTTAGAGTGAGGTC------ rmi_U3.1_scaffold_3_1260839,1261 -------GGCCGTATTATTCCTCACCAAC----GAGAAC------ rmi_U3.2_scaffold_4_2443971,2444 ------GTCGTATAATATTCCTCACCAAC----GAGAAC------ rgr_U3.1_scaffold_2_1450682,1450 ------------CGCATCCCCATCTGAGC----GAGAAC------ rgr_U3.2_scaffold_2_1402058,1402 ------CGC------ATCCCCATCTGAGC----GAGAACCA---- sro_U3.1_scaffold_5_953060,95334 --------CGAGGCGGATCCCACGTAACCAAGCGAGAAC------ sro_U3.2_scaffold_5_52594,52825_ ------CGAGGCGGATCCCCAGTAAAACCAAGCGAGAAC------ sro_U3.3_scaffold_5_41069,41313_ ----------CGGATCCCCAGTAAAAACCAAGCGAGAAC------ ppa_U3.1 ----------TAGGCTGCGCATCCCTTCTAAGCGAGAAC------ pti_U3.4_GG705418_754741,754990_ -----------AAGCCTCCCGTTTCACCTTAGCGAGAACCGCCAG psr_U3.4_Supercontig_1.14_436005 -----------AAGCTTTCTATTTCGTTTGAGCGAGAAC------ psr_U3.5_Supercontig_1.14_359366 -----------AAGCTTTCTATTTCGTTTGAGCGAGAAC------ psr_U3.1_Supercontig_1.78_49588, -----------AAGTTTCTCTATTTCATTGAGCGAGAAC------ psr_U3.2_Supercontig_1.56_356415 -----------AAGTTCTTCTATTTCATTGAGCGAGAAC------ psr_U3.3_Supercontig_1.1_322826, -----------AAGTTCTTCTATTTCCTTGAGCGAGAAC------ pgr_U3.3_supercontig_2_94_165205 -----------AAGTCTTCTATTTCA-TTGAGCGAGAAC------ pgr_U3.1_supercontig_2_8_379313, -----------AAGTTGTCTATTTCGTTTGAGCGAGAAC------ pgr_U3.2_supercontig_2_8_424713, -----------AAGTTGTCTATTTCGTTTGAGCGAGAAC------ pti_U3.5_GG705413_312300,312549_ -----------AAGTT-GTCTGTTTCATTGAGCGAGAAC------ pti_U3.7_GG709425_665,908_-_73.9 -----------AAGT-CTTCTGTTTCCTTGAGCAAGAAC------ pti_U3.6_GG716129_186,418_-_81.3 -----------AAGT-CTTCTGTTTCCTTGAGCAAGAAC------ pti_U3.1_GG706242_703,946_-_97.8 -----------AAGT-CTTCTATTTCCTTGAGCGAGAAC------ pti_U3.2_GG706000_7380,7623___97 -----------AAGT-CTTCTATTTCCTTGAGCGAGAAC------ pti_U3.3_GG705419_1215952,121619 -----------AAGT-CTTCTGTTTCCTTGAGCGAGAAC------ mgl_U3.1_mgl_sf_1_2_45045,45312_ CACACGTGGTCTGCCAACTCCCTTTAGCC----AGTGACGGA--- sre_U3.1_chromosome_3_222005,222 ------CGTTTGCCGCCCTTCACGACAGT----GAGG-------- uma_U3.1_Cont_1.56_33573,33838__ ------CGTTTGCCGCCCTTTACGACAGT----GAGG-------- pat_U3.1_scaffold_00022 ------CGCT-GCCGCCCTTCACGACAGT----GAGG-------- wse_U3.1_scaffold_15_63259,63499 --------CAGCCTCCTTCCCTTCCCACC----GAGAAC------ wse_U3.2_scaffold_15_90061,90300 ------CCTC-----CTTCCCTTACCACC----GAGAAC------ wse_U3.3_scaffold_15_76505,76744 ------CCTC-----CTTCCCTTACCACC----GAGAAC------ sli_U3.1_scaffold_1_539903,54023 -----------ACGGCGCCGTCCCACACT---CGAGAAC------ abi_U3.1_scaffold_17_263518,2637 -------------T----------GGCACTGGTTTTCT------- pos_U3.1_scaffold_05_1058485,105 -------------T----------GGCTTCTTCCTTGT------- pos_U3.2_scaffold_05_631542,6317 -------------T----------GGCTCTCTTC----------- cci_U3.2_scaffold_17_64279,64492 -------------T----------GGCTCTATC------------ cci_U3.1_scaffold_173_28928,2915 -------------T----------GGCTCTTTGTT---------- sco_U3.1_scaffold_5_503574,50379 -------------T----------GGCCGCGC------------- sco_U3.2_scaffold_8_1062161,1062 -------------T----------GGCAGCGC------------- lbi_U3.2_scaffold_12_174103,1743 -------------T----------GGCTTT--------------- lbi_U3.4_LG_4_3924377,3924603_-_ -------------T----------GGCTTT--------------- lbi_U3.5_LG_4_4002317,4002541_-_ -------------T----------GGCTTT--------------- lbi_U3.1_LG_4_3997044,3997267_-_ -------------T----------GGCTT---------------- lbi_U3.3_LG_4_3984740,3984964_-_ -------------T----------GGCTTT--------------- lbi_U3.7_LG_4_4150722,4150946___ -------------T----------GGTTTT--------------- lbi_U3.6_scaffold_20_477047,4772 -------------T----------GGCTTT--------------- sla_U3.3_scaffold_6_338246,33847 -------------T----------GACCTTTTTTTTT-------- sla_U3.5_scaffold_11_128886,1291 -------------T----------GGCTCTTTCCTTGT------- sla_U3.6_scaffold_11_132805,1330 -------------T----------GGCTCTCTCCTTGT------- sla_U3.1_scaffold_8_2248369,2248 -------------T----------GGCCCTTTCTTAT-------- sla_U3.4_scaffold_6_2716474,2716 -------------T----------GGCCTTTTCTTTGC------- sla_U3.2_scaffold_6_385578,38580 -------------T----------GGCATTCTTTTTT-------- asb_U3.4_scaffold_14_935019,9352 -------------T------------------------------- asb_U3.2_scaffold_14_655106,6553 -------------T------------------------------- asb_U3.1_scaffold_4_494989,49520 -------------T------------------------------- asb_U3.3_scaffold_4_475125,47534 -------------T------------------------------- pch_U3.4_scaffold_1_979713,97994 -------------T----------GGCCCCGCCCT---------- pch_U3.1_scaffold_16_598839,5990 -------------T----------GGCCGCCGCCC---------- pch_U3.2_scaffold_4_997110,99734 -------------T----------GGCCGCCGCCC---------- pch_U3.3_scaffold_16_602924,6031 -------------T----------GGCCGCCGCCC---------- ppl_U3.1_scaffold_86_109773,1100 -------------T----------GCGCATTATTT---------- ppl_U3.3_scaffold_159_130347,130 -------------T----------GTGCATTATTT---------- ppl_U3.2_scaffold_30_415191,4154 -------------C----------GTCTGCCTTC----------- ppl_U3.4_scaffold_27_312738,3129 -------------T----------GCTTCTCTCT----------- ppl_U3.5_scaffold_147_172561,172 -------------T----------GCTTCCCTTT----------- han_U3.1_scaffold_06_619688,6199 -------------T----------ATGCGCCTCTTTC-------- han_U3.2_scaffold_06_1978666,197 -------------T----------GGCCCTCTTC----------- han_U3.3_scaffold_06_1489084,148 -------------T----------AGCCGCCTCTT---------- cvi_U3.1_scaffold_7_340585,34086 -------------TCACGGAGTCTGCTTGTTCGCTCCTCTTGGCC cvi_U3.2_scaffold_3_330560,33083 ACACGGAGTCTACTTGTTCGACTTGGCTGCCTTCGGGTGGC---- cne_U3.1_adopted_3_1423435,14236 -------------T----------AGCCG---TCGGTCCTCTCTT cne_U3.2_adopted_8_892818,893067 -------------T----------AGCCA---TCGGTCCTCTCTT tme_U3.1_scaffold_3_32286,32531_ -------------TTTGGACCCGTGTTTTGTCATTTCTTTTGAGG asp_U3.1_scaffold_59_40266,40528 -------------TTTC-------GTCTCTGTCTTTCTTCGG--- asp_U3.2_scaffold_63_101395,1016 -------------TTTC-------GTCTTCCCTTCCTTTG----- rmi_U3.1_scaffold_3_1260839,1261 -------------T------------TTTTCTCGCTGCCTCGCTT rmi_U3.2_scaffold_4_2443971,2444 -------------T----------TTTTCTCGCTGCCTCGCTTCC rgr_U3.1_scaffold_2_1450682,1450 -------------TACGGGCGTGCGCTTCCCGCGCTTCCCTAGAG rgr_U3.2_scaffold_2_1402058,1402 -------------C----------GGGCGTGCGCTTCCCGCGCTT sro_U3.1_scaffold_5_953060,95334 -------------TCGA-------AACTCCTC------------- sro_U3.2_scaffold_5_52594,52825_ -------------TCGGGGGA---ATCTCTTCCCTCG-------- sro_U3.3_scaffold_5_41069,41313_ -------------TCGGGGGC------------------------ ppa_U3.1 -------------TTCCCTGCCCCAGCTA---------------- pti_U3.4_GG705418_754741,754990_ C------------T----------GGGCTCGCCCCACTT------ psr_U3.4_Supercontig_1.14_436005 -------------T----------GTCTGTTTCGTGC-------- psr_U3.5_Supercontig_1.14_359366 -------------T----------GTCTGGTTCTTCC-------- psr_U3.1_Supercontig_1.78_49588, -------------C----------GTCTCTTATCTTT-------- psr_U3.2_Supercontig_1.56_356415 -------------T----------GTCTGTTTCGTC--------- psr_U3.3_Supercontig_1.1_322826, -------------T----------GTCTGCTTCGT---------- pgr_U3.3_supercontig_2_94_165205 -------------C----------GTCTGTCTTTCGATGGCTTGC pgr_U3.1_supercontig_2_8_379313, -------------T----------GTCTG---CTCGACCCTTAG- pgr_U3.2_supercontig_2_8_424713, -------------T----------GTCTG---CTCGACCCTTAG- pti_U3.5_GG705413_312300,312549_ -------------C----------GTCTGTCGAT----------- pti_U3.7_GG709425_665,908_-_73.9 -------------T----------TTCTGTCA------------- pti_U3.6_GG716129_186,418_-_81.3 -------------T----------GTCTGTCG------------- pti_U3.1_GG706242_703,946_-_97.8 -------------T----------GTCTGTCG------------- pti_U3.2_GG706000_7380,7623___97 -------------T----------GTCTGTCG------------- pti_U3.3_GG705419_1215952,121619 -------------T----------GTCTGTCG------------- mgl_U3.1_mgl_sf_1_2_45045,45312_ -------------T----------GTTGGGCCTCTGTCGCCCGTC sre_U3.1_chromosome_3_222005,222 -------------CTACATCAAGGGCCTTGTCGTCCTTC------ uma_U3.1_Cont_1.56_33573,33838__ -------------CTATATCAAGGGCCTTGTCATCGCTC------ pat_U3.1_scaffold_00022 -------------CTAT-CCAAGGGCCTTGTCGATGATG------ wse_U3.1_scaffold_15_63259,63499 -------------TATGAGGGGGTAGT------------------ wse_U3.2_scaffold_15_90061,90300 -------------TATGAGGGGGTAGT------------------ wse_U3.3_scaffold_15_76505,76744 -------------TATGAGGGGGTAGT------------------ sli_U3.1_scaffold_1_539903,54023 -------------TCGCG------GTCCTGCCGCC---------- abi_U3.1_scaffold_17_263518,2637 --------------------------------------------- pos_U3.1_scaffold_05_1058485,105 --------------------------------------------- pos_U3.2_scaffold_05_631542,6317 --------------------------------------------- cci_U3.2_scaffold_17_64279,64492 --------------------------------------------- cci_U3.1_scaffold_173_28928,2915 --------------------------------------------- sco_U3.1_scaffold_5_503574,50379 --------------------------------------------- sco_U3.2_scaffold_8_1062161,1062 --------------------------------------------- lbi_U3.2_scaffold_12_174103,1743 -------------------------------------------GC lbi_U3.4_LG_4_3924377,3924603_-_ -------------------------------------------GC lbi_U3.5_LG_4_4002317,4002541_-_ -------------------------------------------GC lbi_U3.1_LG_4_3997044,3997267_-_ -------------------------------------------TG lbi_U3.3_LG_4_3984740,3984964_-_ -------------------------------------------GC lbi_U3.7_LG_4_4150722,4150946___ -------------------------------------------GC lbi_U3.6_scaffold_20_477047,4772 -------------------------------------------GC sla_U3.3_scaffold_6_338246,33847 --------------------------------------------- sla_U3.5_scaffold_11_128886,1291 --------------------------------------------- sla_U3.6_scaffold_11_132805,1330 --------------------------------------------- sla_U3.1_scaffold_8_2248369,2248 --------------------------------------------- sla_U3.4_scaffold_6_2716474,2716 --------------------------------------------- sla_U3.2_scaffold_6_385578,38580 --------------------------------------------- asb_U3.4_scaffold_14_935019,9352 -------------------------------------------GC asb_U3.2_scaffold_14_655106,6553 -------------------------------------------GC asb_U3.1_scaffold_4_494989,49520 -------------------------------------------GC asb_U3.3_scaffold_4_475125,47534 -------------------------------------------GC pch_U3.4_scaffold_1_979713,97994 -------------------------------------------TC pch_U3.1_scaffold_16_598839,5990 -------------------------------------------TC pch_U3.2_scaffold_4_997110,99734 -------------------------------------------TC pch_U3.3_scaffold_16_602924,6031 -------------------------------------------TC ppl_U3.1_scaffold_86_109773,1100 --------------------------------------------- ppl_U3.3_scaffold_159_130347,130 --------------------------------------------- ppl_U3.2_scaffold_30_415191,4154 --------------------------------------------- ppl_U3.4_scaffold_27_312738,3129 --------------------------------------------- ppl_U3.5_scaffold_147_172561,172 --------------------------------------------- han_U3.1_scaffold_06_619688,6199 --------------------------------------------- han_U3.2_scaffold_06_1978666,197 --------------------------------------------- han_U3.3_scaffold_06_1489084,148 --------------------------------------------- cvi_U3.1_scaffold_7_340585,34086 TTCGGGCCA----------------------------------TC cvi_U3.2_scaffold_3_330560,33083 -------------------------------------------TC cne_U3.1_adopted_3_1423435,14236 TCGAGAGAG----------------------------------GT cne_U3.2_adopted_8_892818,893067 TCGAGTGAG----------------------------------GT tme_U3.1_scaffold_3_32286,32531_ TGAA---------------------------------------GA asp_U3.1_scaffold_59_40266,40528 -------------------------------------------GA asp_U3.2_scaffold_63_101395,1016 -------------------------------------------GA rmi_U3.1_scaffold_3_1260839,1261 TACATGACCACGTCTACGTGGTCAAGCATCTCTTTATGAGATGCG rmi_U3.2_scaffold_4_2443971,2444 AATGACCGCGTTAACGGTGGTCAAAGCATCTCTTCATGAGACGCG rgr_U3.1_scaffold_2_1450682,1450 GGAGCCGG-----------------------------------GT rgr_U3.2_scaffold_2_1402058,1402 CCCTAGAGGGAGCCGG---------------------------GT sro_U3.1_scaffold_5_953060,95334 -------------------------------------------GT sro_U3.2_scaffold_5_52594,52825_ --------------------------------------------- sro_U3.3_scaffold_5_41069,41313_ -------------------------------------------GC ppa_U3.1 -------------------------------------------GT pti_U3.4_GG705418_754741,754990_ --------------------------------------------- psr_U3.4_Supercontig_1.14_436005 --------------------------------------------- psr_U3.5_Supercontig_1.14_359366 --------------------------------------------- psr_U3.1_Supercontig_1.78_49588, -------------------------------------------TC psr_U3.2_Supercontig_1.56_356415 -------------------------------------------TT psr_U3.3_Supercontig_1.1_322826, -------------------------------------------CT pgr_U3.3_supercontig_2_94_165205 -------------------------------------------CC pgr_U3.1_supercontig_2_8_379313, --------------------------------------------- pgr_U3.2_supercontig_2_8_424713, --------------------------------------------- pti_U3.5_GG705413_312300,312549_ -------------------------------------------CT pti_U3.7_GG709425_665,908_-_73.9 -------------------------------------------AG pti_U3.6_GG716129_186,418_-_81.3 -------------------------------------------AG pti_U3.1_GG706242_703,946_-_97.8 -------------------------------------------AG pti_U3.2_GG706000_7380,7623___97 -------------------------------------------AG pti_U3.3_GG705419_1215952,121619 -------------------------------------------AG mgl_U3.1_mgl_sf_1_2_45045,45312_ GATGATCTGAT--------------------------------GC sre_U3.1_chromosome_3_222005,222 -------------------------------------------TC uma_U3.1_Cont_1.56_33573,33838__ -------------------------------------------TC pat_U3.1_scaffold_00022 -------------------------------------------TG wse_U3.1_scaffold_15_63259,63499 -------------------------------------------TT wse_U3.2_scaffold_15_90061,90300 -------------------------------------------TT wse_U3.3_scaffold_15_76505,76744 -------------------------------------------TT sli_U3.1_scaffold_1_539903,54023 --------------------------------------------- abi_U3.1_scaffold_17_263518,2637 --AACCGGTGTC----------TCGAGGAC-------GTTTTGGC pos_U3.1_scaffold_05_1058485,105 ---GGAGAGGCC----------TCGAGGAC-------G-TTTGGT pos_U3.2_scaffold_05_631542,6317 ----GGGGAGTC----------TCGAGGAC-------G-TTTGGC cci_U3.2_scaffold_17_64279,64492 -------GAGTC----------TCGAGGAC-------G-TTTGGT cci_U3.1_scaffold_173_28928,2915 -------GAGTC----------TCGAGGAC-------G-TTTGGC sco_U3.1_scaffold_5_503574,50379 ----AAGCGGTC----------TCGAGGAT-------G-TTTGGC sco_U3.2_scaffold_8_1062161,1062 ----AAGCTGTC----------TCGAGGAT-------G-TTTGGC lbi_U3.2_scaffold_12_174103,1743 GCAAGCAAAGTC----------TCGAGGAC-------G-TTTGGT lbi_U3.4_LG_4_3924377,3924603_-_ GCAAGCGGGGCT----------TCGAGGAC-------G-TTTGGT lbi_U3.5_LG_4_4002317,4002541_-_ GCAAGCAGGGCC----------TCGAGGAC-------G-TTTGGT lbi_U3.1_LG_4_3997044,3997267_-_ CGCAAGCAGGCC----------TCGAGGAC-------G-TTTGGT lbi_U3.3_LG_4_3984740,3984964_-_ GCAAGCAGGGCC----------TCGAGGAC-------G-TTTGGT lbi_U3.7_LG_4_4150722,4150946___ GCAAGCAGGGCC----------TTGAGGAT-------G-TTTGGT lbi_U3.6_scaffold_20_477047,4772 GCAAGCAGGGCC----------TCGAGGAC-------G-TTTGGT sla_U3.3_scaffold_6_338246,33847 ----AGAGGGTC----------TCGATGAA-------G-TTTGGT sla_U3.5_scaffold_11_128886,1291 ---GAGAGAGTT----------TCGAGGAT-------G-TTTGGT sla_U3.6_scaffold_11_132805,1330 ---GAGAGAGTT----------TCGAGGAT-------G-TTTGGT sla_U3.1_scaffold_8_2248369,2248 ---GAAGGGGTC----------TCGAGGAC-------G-TTTGGT sla_U3.4_scaffold_6_2716474,2716 ----AAAGGGTC----------TCGAGGAC-------G-TTTGGT sla_U3.2_scaffold_6_385578,38580 ----AGAGTGCC----------TCGATGAA-------G-TTTGGT asb_U3.4_scaffold_14_935019,9352 GCCTCACAGCGC----------TCGATGAA-------G-CTGGCC asb_U3.2_scaffold_14_655106,6553 GCCTCACAGCGC----------TCGATGAA-------G-CTGGCC asb_U3.1_scaffold_4_494989,49520 GCTTCACGGCGC----------TCGATGAA-------G-CTGGCC asb_U3.3_scaffold_4_475125,47534 GCCTCACGGCGC----------TCGATGAA-------G-CTGGCC pch_U3.4_scaffold_1_979713,97994 GGGCGCGGGGTC----------GCGAGGAC-------G-TTTGGC pch_U3.1_scaffold_16_598839,5990 GGGCGTGCGGTC----------GCGAGGAC-------G-TTTGAC pch_U3.2_scaffold_4_997110,99734 GGGTGTGCGGTC----------GCGAGGAC-------G-TTTGAC pch_U3.3_scaffold_16_602924,6031 GGGCGTGCGGTC----------GCGAGGAC-------G-TTTGAC ppl_U3.1_scaffold_86_109773,1100 -----GATGCGC----------TCGAGGAC-------G-TTTGGT ppl_U3.3_scaffold_159_130347,130 -----GATGCGC----------TCGAGGAC-------G-TTTGGT ppl_U3.2_scaffold_30_415191,4154 ----GGGCGGAC----------TCGAGGAC-------G-TTTGGT ppl_U3.4_scaffold_27_312738,3129 -----GGGGAGC----------GCGAGGAC-------G-TTTGGT ppl_U3.5_scaffold_147_172561,172 -----GGGGAGC----------GCGAGGAC-------G-TTTGGT han_U3.1_scaffold_06_619688,6199 ---GGGTGGCGC----------TCGAGGAC-------G-TTAGGA han_U3.2_scaffold_06_1978666,197 ----GGAGGGTC----------TCGAGGAC-------G-TTTGGT han_U3.3_scaffold_06_1489084,148 ----GGGCGGTC----------TCGAGGAC-------GTTTGGGC cvi_U3.1_scaffold_7_340585,34086 AGGTTTGAACAA----------TCGATGAA-------G-TCCGGC cvi_U3.2_scaffold_3_330560,33083 AAGCTGGAACAA----------TCGATGAA-------G-CCCGGC cne_U3.1_adopted_3_1423435,14236 TCCGGGAGGTTA----------TCGAAGAA-------G-CTGG-- cne_U3.2_adopted_8_892818,893067 TCCGAGAGGTTA----------TCGAAGAA-------G-CTGGCG tme_U3.1_scaffold_3_32286,32531_ AATACGGGTCTA----------TCGAAGAA-------G-CTGGCG asp_U3.1_scaffold_59_40266,40528 AGGCAGAAACGC----------TCGAAGAA---------CTTGGT asp_U3.2_scaffold_63_101395,1016 GGTGGAAGACGC----------TCGAAGA--------A-CTCGGT rmi_U3.1_scaffold_3_1260839,1261 GCAGGCTAGCGC----------TCGATGAC---------TTGGGC rmi_U3.2_scaffold_4_2443971,2444 GCAGGCTAGCGC----------TCGATGACTTGG---G-CTCGGC rgr_U3.1_scaffold_2_1450682,1450 CGCGTGCGCTCC----------TCGATGACCTTGA--G-CTCGCT rgr_U3.2_scaffold_2_1402058,1402 CGAGTGCGCTCC----------TCGATGACCTTGA--G-CTCGCT sro_U3.1_scaffold_5_953060,95334 CCAGAGGGGTTT--------CGTCGATGAC-------C-TTGAGT sro_U3.2_scaffold_5_52594,52825_ ----------------------TCGATGAC-------C-TTGAGT sro_U3.3_scaffold_5_41069,41313_ AGAGGAGAACTCTTCGCCCTCGTCGATGACCTTGA--G-TTCGAT ppa_U3.1 NTGAGGCAGGGA----------TCGATGAC-------C-TTAGGC pti_U3.4_GG705418_754741,754990_ ----------GC----------TCGATGAC-------C-TTGGGC psr_U3.4_Supercontig_1.14_436005 --------AGAC----------TCGATGAC-------C-TTGGGC psr_U3.5_Supercontig_1.14_359366 --------AGAC----------TCGATGAC-------C-TTGGGC psr_U3.1_Supercontig_1.78_49588, CTGATAAGAGAC----------TCGATGAC-------C-TTGGGC psr_U3.2_Supercontig_1.56_356415 TTGACGACAGAC----------TCGATGAC-------CTTTAGGC psr_U3.3_Supercontig_1.1_322826, TTGACGACAGAC----------TCGATGAC-------CTTTAGGC pgr_U3.3_supercontig_2_94_165205 TCGTTGAC-GAC----------TCGATGAC-------C-TTGGGC pgr_U3.1_supercontig_2_8_379313, TGGTCGACAGAC----------TCGATGAC-------C-TTGGGC pgr_U3.2_supercontig_2_8_424713, TGGTCGACAGAC----------TCGATGAC-------C-TTGGGC pti_U3.5_GG705413_312300,312549_ CGGTCGACAGAC----------TCGATGAC-------C-TTGGGC pti_U3.7_GG709425_665,908_-_73.9 CAATCAGCAGAC----------TCGATGAT-------C-TTGGGC pti_U3.6_GG716129_186,418_-_81.3 CAATTGGCAGAC----------TCGATGAC-------C-TTGGGC pti_U3.1_GG706242_703,946_-_97.8 CAATCGGCAGAC----------TCGATGAC-------C-TTGGGC pti_U3.2_GG706000_7380,7623___97 CAATCGGCAGAC----------TCGATGAC-------C-TTGGGC pti_U3.3_GG705419_1215952,121619 CAATCGGCAGAC----------TCGATGAC-------C-TTGGGC mgl_U3.1_mgl_sf_1_2_45045,45312_ CCTTCGATTGCT----------TCGAGGCCTT-----T-GTGGGT sre_U3.1_chromosome_3_222005,222 ACCTCGTGTGAGGAGGGCG---------ATTCTAGCCG-CCCGCC uma_U3.1_Cont_1.56_33573,33838__ ACCTAGTGTGAG----------ACGATGATTCTAGCCG-CCCGCC pat_U3.1_scaffold_00022 CCTCGTGCACA-----------CCATTGATTCTAGCCG-CCCGCC wse_U3.1_scaffold_15_63259,63499 ACTACCAGCCTC----------TCGATGACGTGCAC-G-CTTACC wse_U3.2_scaffold_15_90061,90300 ACTACCAGCCTC----------TCGATGACGTGCAC-G-CTTACC wse_U3.3_scaffold_15_76505,76744 ACTACCAGCCTC----------TCGATGACGTGCAC-G-CTTACC sli_U3.1_scaffold_1_539903,54023 ----------------------TCGTTGAG-------ATTTGGTC abi_U3.1_scaffold_17_263518,2637 TT--------------------------------------TTCCA pos_U3.1_scaffold_05_1058485,105 GG-------------------------------------TTCCGG pos_U3.2_scaffold_05_631542,6317 TT-------------------------------------GCTCAG cci_U3.2_scaffold_17_64279,64492 TG-------------------------------------GTTCGT cci_U3.1_scaffold_173_28928,2915 GG-------------------------------------GTTTGT sco_U3.1_scaffold_5_503574,50379 CA-------------------------------------GTCCGA sco_U3.2_scaffold_8_1062161,1062 CA-------------------------------------GCTTTC lbi_U3.2_scaffold_12_174103,1743 TC--------------------------------------GTCTT lbi_U3.4_LG_4_3924377,3924603_-_ GG------------------------------------GTTTCTT lbi_U3.5_LG_4_4002317,4002541_-_ GA-------------------------------------ACCCAT lbi_U3.1_LG_4_3997044,3997267_-_ GA-------------------------------------GCTCAT lbi_U3.3_LG_4_3984740,3984964_-_ GA-------------------------------------GCTCAT lbi_U3.7_LG_4_4150722,4150946___ GA-------------------------------------GCTCAT lbi_U3.6_scaffold_20_477047,4772 GA-------------------------------------GCTCAT sla_U3.3_scaffold_6_338246,33847 TT--------------------------------------TTCTT sla_U3.5_scaffold_11_128886,1291 TT-------------------------------------GGTCTG sla_U3.6_scaffold_11_132805,1330 TT-------------------------------------GGTCTG sla_U3.1_scaffold_8_2248369,2248 TT-------------------------------------GTTTTG sla_U3.4_scaffold_6_2716474,2716 TT-------------------------------------GTTCTG sla_U3.2_scaffold_6_385578,38580 TT--------------------------------------TTCTT asb_U3.4_scaffold_14_935019,9352 CG------------------------------------CGTTCCT asb_U3.2_scaffold_14_655106,6553 CG------------------------------------CGTTCTT asb_U3.1_scaffold_4_494989,49520 CT------------------------------------CGTTCTT asb_U3.3_scaffold_4_475125,47534 CT------------------------------------TGTTCTT pch_U3.4_scaffold_1_979713,97994 TT------------------------------------ACCTTCA pch_U3.1_scaffold_16_598839,5990 TC-------------------------------------GCGTTC pch_U3.2_scaffold_4_997110,99734 TC-------------------------------------GCGTTC pch_U3.3_scaffold_16_602924,6031 TC-------------------------------------GCGTTC ppl_U3.1_scaffold_86_109773,1100 TC-------------------------------------ACTCGT ppl_U3.3_scaffold_159_130347,130 TC-------------------------------------ACTCGT ppl_U3.2_scaffold_30_415191,4154 CC--------------------------------------GCGCC ppl_U3.4_scaffold_27_312738,3129 TC-------------------------------------GTTCGC ppl_U3.5_scaffold_147_172561,172 TT-------------------------------------GTTTGC han_U3.1_scaffold_06_619688,6199 TG-------------------------------------GCTTGA han_U3.2_scaffold_06_1978666,197 TC-------------------------------------GTGTTT han_U3.3_scaffold_06_1489084,148 TG-----------------------------------------CT cvi_U3.1_scaffold_7_340585,34086 GG-----------------------------------GAGGTCTT cvi_U3.2_scaffold_3_330560,33083 GG---------GGGATC-----------------------TTGTA cne_U3.1_adopted_3_1423435,14236 ----------------------------------------CGGTA cne_U3.2_adopted_8_892818,893067 GT---------------------------------CGCATACCTG tme_U3.1_scaffold_3_32286,32531_ AC------------------------------------------- asp_U3.1_scaffold_59_40266,40528 CA------------------------------------------- asp_U3.2_scaffold_63_101395,1016 CT------------------------------------------- rmi_U3.1_scaffold_3_1260839,1261 TC---------------GGTGTGCACCAGAGACGACTCGTTTCGT rmi_U3.2_scaffold_4_2443971,2444 GT--------------------GCACCAGAGACGACTCGTTCGTT rgr_U3.1_scaffold_2_1450682,1450 CG--------TACCGCCCCCTCGTTTCCGAGGTGGGTTGTCCGGC rgr_U3.2_scaffold_2_1402058,1402 CG--------TACCGCCCCCTCGTTTCCGAGGTGGGTTGTCCGGC sro_U3.1_scaffold_5_953060,95334 TC-------GCTTCACACCTCCCTCTCCTTCGTGAGTTGGGCTGT sro_U3.2_scaffold_5_52594,52825_ TC--GATATCACACCTCCCTCTCCTTTTAGTCGAGTTTGGGTTGT sro_U3.3_scaffold_5_41069,41313_ TT-------CACACCTCCCTCTCCTTTTAGTCGAGTTTGGGTTGT ppa_U3.1 CTAGTTCTCACCTGTTCATCTTGCTTGGTCAATTTTGGAACTTGA pti_U3.4_GG705418_754741,754990_ TT-----ACTCCGCCGCCTCATCTCTCAGGTGATGGTTG-TCAGG psr_U3.4_Supercontig_1.14_436005 CACTTCTCACCGCCTCTTTCATTTTTTTTTTGGAAGAGGTCTCGT psr_U3.5_Supercontig_1.14_359366 CA-CTCCTCACCGCCTCTTTCATTTTCTTTTGGAAGGGGTCTCGT psr_U3.1_Supercontig_1.78_49588, TA---CTCTTCACCGCTCTTATCTCTTTCTGGATCTGAGTTTCGT psr_U3.2_Supercontig_1.56_356415 TG---CTCTTTCACCGCCTTTCTTCTCTTTGGAACAAAGTGTCGT psr_U3.3_Supercontig_1.1_322826, TT--CTCTATCACCGCCTTTGCTCCTTGTTTGAGTAAAGTGTCGT pgr_U3.3_supercontig_2_94_165205 TG----CCTTTCCGCCTCCTCTTGTCTCTTCTGATTCGAG-CTGT pgr_U3.1_supercontig_2_8_379313, CA----TTCTTCCACCACCTCTT-TCTTGTTTGATTGGGGATTGT pgr_U3.2_supercontig_2_8_424713, CA----TTCTTCCACCACCTCTT-TCTTGTTTGATTGGGGATTGT pti_U3.5_GG705413_312300,312549_ TG------CCCTCCACCTCCTCGTCCCTCTGGGGACTTGGCTTGT pti_U3.7_GG709425_665,908_-_73.9 CA--------TCCTCCACCACCCCGTCTTCATTGACAGGGCTCGT pti_U3.6_GG716129_186,418_-_81.3 CA----------------------TCCTCCACCACCCTGTCTTCA pti_U3.1_GG706242_703,946_-_97.8 CA--------TCCTCCACCACCCCGTCTTCACTGACAGGGCTCGT pti_U3.2_GG706000_7380,7623___97 CA--------TCCTCCACCACCCCGTCTTCACTGACAGGGCTCGT pti_U3.3_GG705419_1215952,121619 CA--------TCTTCCACCACCCCGTCTTCACTGACAGGGCTCGT mgl_U3.1_mgl_sf_1_2_45045,45312_ TC--------------------------------------TTGGG sre_U3.1_chromosome_3_222005,222 GA------------------------------------------- uma_U3.1_Cont_1.56_33573,33838__ GA------------------------------------------- pat_U3.1_scaffold_00022 GA------------------------------------------- wse_U3.1_scaffold_15_63259,63499 TA--------------------------------------TACGC wse_U3.2_scaffold_15_90061,90300 TA--------------------------------------TACGC wse_U3.3_scaffold_15_76505,76744 TA--------------------------------------TACGC sli_U3.1_scaffold_1_539903,54023 GGATCGCGCCGCGCGGCGCCTGTCCTCACGGGCACGGTCGCTCGC abi_U3.1_scaffold_17_263518,2637 TTCTC-------CT---GAGCTTGTATG---AGCACTTGAGAGGA pos_U3.1_scaffold_05_1058485,105 TGTGC-------TTTGCTCTTCGG-------AGTGGGCTCCTGGG pos_U3.2_scaffold_05_631542,6317 TTTGC-------TTGTGCTCTTCGG------AGCCGGCGAATGGG cci_U3.2_scaffold_17_64279,64492 TGGGT-------TC---GCTCGCAAG-----AGCTGCCTGACAGA cci_U3.1_scaffold_173_28928,2915 TGGGT-------TTTTGGCTCGCGAG-----AGCTGCTCGATGAA sco_U3.1_scaffold_5_503574,50379 CGGGA-------TCTGCTCTTCG--------GGGCGTCTCGGAGG sco_U3.2_scaffold_8_1062161,1062 TGGGG-------TCTGCTCTTCG--------GAGCGCTCTGGAGA lbi_U3.2_scaffold_12_174103,1743 CTCAA-------GC---AACTTGAAAA----AGTTTCTCGAGAGA lbi_U3.4_LG_4_3924377,3924603_-_ TGGGC-------AT---GCTTGTATG-----AGCTGCTTGGAGGA lbi_U3.5_LG_4_4002317,4002541_-_ CGGGC-------GT---GCTTTTTAA-----AGCCGCTTGAAGGA lbi_U3.1_LG_4_3997044,3997267_-_ TGGGT-------GT---GCTTTTTAA-----AGCCGCTTGAAGGA lbi_U3.3_LG_4_3984740,3984964_-_ TGGGC-------GT---GCATTTTAA-----AGCCGCTTGAGGAA lbi_U3.7_LG_4_4150722,4150946___ TGGAC-------GT---GCTTTCTGA-----AGCCTCTTGAAGAA lbi_U3.6_scaffold_20_477047,4772 TGGCG-------TG---CTTTTTGA------AGCTGCTTGAAGAA sla_U3.3_scaffold_6_338246,33847 CGTTT-------GCAACTGTTTC--------AGTTGCTCGCGAGT sla_U3.5_scaffold_11_128886,1291 TCATT-------GGATTGCTTTTGC------AGTTTTGATGACGA sla_U3.6_scaffold_11_132805,1330 TCATT-------GGATTGCTTTTGC------AGTTTTGATGATGA sla_U3.1_scaffold_8_2248369,2248 TTGTC-------TGGCTGCTTTTGC------AGGTTTGATGACGA sla_U3.4_scaffold_6_2716474,2716 TTGTC-------TGACTGCTTTTGC------AGTTTTGATAATGA sla_U3.2_scaffold_6_385578,38580 TGCTT-------GCAGCTGTTTC--------AGTTGCTCGCAAGT asb_U3.4_scaffold_14_935019,9352 TGCTC-------TC---CGCTTC--------GGCGGTCTGCAGCC asb_U3.2_scaffold_14_655106,6553 TGCTC-------TC---CGTTTC--------GGCGGTCTGCAGAC asb_U3.1_scaffold_4_494989,49520 TGCTC-------TC---TGCTTC--------GGCGGTCTGCAGGC asb_U3.3_scaffold_4_475125,47534 TGCTC-------TC---TGCTTT--------AGCGGTCTGCAGGC pch_U3.4_scaffold_1_979713,97994 GTGTC-------GTGCCGGTTTC--------GGTCGCACAGGAGG pch_U3.1_scaffold_16_598839,5990 TGCGC-------GCACTGGTTTC--------AGTCGCGCGGGATG pch_U3.2_scaffold_4_997110,99734 TGCGC-------GCACTGGTTTC--------AGTCGCGCGGGATG pch_U3.3_scaffold_16_602924,6031 TGCGC-------GCACTGGTTTC--------AGTCGCGCGGGATG ppl_U3.1_scaffold_86_109773,1100 CTGCG-------CC---CTCTTCG-------AGTGGTGCGGATGG ppl_U3.3_scaffold_159_130347,130 CTGCG-------CC---TTCTTCG-------AGTGGTGCGGATGG ppl_U3.2_scaffold_30_415191,4154 CCTGT-------CT---GCCCTTTG------GGCGAGACGGGAGC ppl_U3.4_scaffold_27_312738,3129 TGCGG-------AC---GCCTTTG-------GGCTGTGCGGCGGA ppl_U3.5_scaffold_147_172561,172 TGTGT-------AC---GCCTTTG-------GGCTGTGCGGCGGA han_U3.1_scaffold_06_619688,6199 TTGAG-------TG-----------------TACCATCAGGTATA han_U3.2_scaffold_06_1978666,197 CGGAG-------GC---GCCTTGT-------GCTGCCTCTGGGGC han_U3.3_scaffold_06_1489084,148 TCGTC-------CT---GGCTCCAA------GGAGCTAGTGCGCT cvi_U3.1_scaffold_7_340585,34086 TATGA-------GCGAAGACACC--------GTTTCGATGGTGTC cvi_U3.2_scaffold_3_330560,33083 TAATG-------AA---GACATC--------GTCTTGATGGTGTC cne_U3.1_adopted_3_1423435,14236 TGGTA-------CC---AGTTTTGA------CCTCTTGGGGAAAG cne_U3.2_adopted_8_892818,893067 CCAA---------------------------CCCTCCGGGGAAGG tme_U3.1_scaffold_3_32286,32531_ -GAAT-------CT---GACCTT--------TTCGAAAGAAGAGT asp_U3.1_scaffold_59_40266,40528 -GGAA-------GG---AACCTC--------AACCTGAAAAGGTT asp_U3.2_scaffold_63_101395,1016 -AAGG-------GG---AACCTC--------AGCCTGAAAAGGTT rmi_U3.1_scaffold_3_1260839,1261 TCTCT-------GTGTTGTCTTCTT------TTTCATGAGCTGGC rmi_U3.2_scaffold_4_2443971,2444 CTCTG-------TG---TTGTCT--------TCTTTTCACGAGCT rgr_U3.1_scaffold_2_1450682,1450 CTCTG-------CT---GCCCCCGGCTC---GCCTCGCGCGGTCT rgr_U3.2_scaffold_2_1402058,1402 CTCTG-------CT---GCCCCCGGCTC---GCCTCGCGCGGTCG sro_U3.1_scaffold_5_953060,95334 CCGGT-------TC---TCTTCT--------TTCCCTCTGGGACT sro_U3.2_scaffold_5_52594,52825_ CCGGT-------TC------------------TGTCCGTCTCTCG sro_U3.3_scaffold_5_41069,41313_ CCGGT-------TC------------------TGTCCGTCTTTCG ppa_U3.1 AAGGCTAGTCAATCATTGTCTTTGCAT----ATTTGCAAAGTTGA pti_U3.4_GG705418_754741,754990_ CTCAC-------CT---CGTTCT--------ACCCGTAGAGCGCT psr_U3.4_Supercontig_1.14_436005 CGTGC-------TT---GCTTTT--------GTGCTTTGTTCACT psr_U3.5_Supercontig_1.14_359366 CGTGC-------TT---GCTTTT--------GTGCTTTGTCCACT psr_U3.1_Supercontig_1.78_49588, CGTGC-------TTGCTCGTTTTC-------TCTCTTCGGAGGTT psr_U3.2_Supercontig_1.56_356415 CGTGC-------GA---GCTCT---------TTCTCTTCGGAGGT psr_U3.3_Supercontig_1.1_322826, CGTGT-------GA---GCTTTTTC------ACTCTTCGGAGGAT pgr_U3.3_supercontig_2_94_165205 CGTGC-------TC---GCTTCTG-------ATCCTTCGCGGTCT pgr_U3.1_supercontig_2_8_379313, CGTGC-------TT---GCCT-TG-------GCCTCTCGAGGTCT pgr_U3.2_supercontig_2_8_424713, CGTGC-------TT---GCCT-TG-------GCCTCTCGAGGTCT pti_U3.5_GG705413_312300,312549_ CGTGC-------TC---GCTTGTC-------GTCCCACCGGACTT pti_U3.7_GG709425_665,908_-_73.9 CGTGC-------TC---GTCTT---------GACCTTCCGGAGTC pti_U3.6_GG716129_186,418_-_81.3 TTGAC-------AGGTCGTCTT---------GACCTTCCGGGGTC pti_U3.1_GG706242_703,946_-_97.8 CGTGC-------TT---CTCTT---------GACCTTTCGGGGTC pti_U3.2_GG706000_7380,7623___97 CGTGC-------TT---CTCTT---------GACCTTTCGGGGTC pti_U3.3_GG705419_1215952,121619 CGTGC-------TC---GTCTT---------GACCTTCCGGGGTC mgl_U3.1_mgl_sf_1_2_45045,45312_ AATGT-------AG---GTTCTTGG------GACGTTCGGATTCT sre_U3.1_chromosome_3_222005,222 ------------GG---ACCTTT--------GCCCGAGGAGCAAC uma_U3.1_Cont_1.56_33573,33838__ ------------GG---ACCTTA--------GCCCGAGGAGCAAC pat_U3.1_scaffold_00022 ------------GG---ACCTTT--------GCCCGACGAGCAAC wse_U3.1_scaffold_15_63259,63499 CGGTG-------TT---GCTTCCAAC-----ATTTGGTGTGGTTT wse_U3.2_scaffold_15_90061,90300 CGGTG-------TT---GCTTCAAC------ATTTGGCGTGGTTT wse_U3.3_scaffold_15_76505,76744 CGGTG-------TT---GCTTCAAC------ATTTGGCGTGGTTT sli_U3.1_scaffold_1_539903,54023 GTCGT-------CCATGGCCCGCTCGCTGCCGGCCTGCGAGGGCT abi_U3.1_scaffold_17_263518,2637 -CTTGTCAGC----------------------------------- pos_U3.1_scaffold_05_1058485,105 -GCTGCCAGC----------------------------------- pos_U3.2_scaffold_05_631542,6317 -CTGGCCAGC----------------------------------- cci_U3.2_scaffold_17_64279,64492 -CTAACCAGC----------------------------------- cci_U3.1_scaffold_173_28928,2915 -CTCGTCAGC----------------------------------- sco_U3.1_scaffold_5_503574,50379 -GTGGTCAGC----------------------------------- sco_U3.2_scaffold_8_1062161,1062 -CTGGTCAGC----------------------------------- lbi_U3.2_scaffold_12_174103,1743 -TTTGCCAGC----------------------------------- lbi_U3.4_LG_4_3924377,3924603_-_ -CTTGTCAGC----------------------------------- lbi_U3.5_LG_4_4002317,4002541_-_ -CTTGCCAGC----------------------------------- lbi_U3.1_LG_4_3997044,3997267_-_ -CTTGCCAGC----------------------------------- lbi_U3.3_LG_4_3984740,3984964_-_ -CTTGCCAGC----------------------------------- lbi_U3.7_LG_4_4150722,4150946___ -CTTGCCAGA----------------------------------- lbi_U3.6_scaffold_20_477047,4772 -CTTGCCAGC----------------------------------- sla_U3.3_scaffold_6_338246,33847 -CAAGCCAGC----------------------------------- sla_U3.5_scaffold_11_128886,1291 -CAAGCCAGC----------------------------------- sla_U3.6_scaffold_11_132805,1330 -CAAGCCAGC----------------------------------- sla_U3.1_scaffold_8_2248369,2248 -CGAGCCAGC----------------------------------- sla_U3.4_scaffold_6_2716474,2716 -CAAGCCAGC----------------------------------- sla_U3.2_scaffold_6_385578,38580 -CGAGCCAGC----------------------------------- asb_U3.4_scaffold_14_935019,9352 -GTGGGCCGC----------------------------------- asb_U3.2_scaffold_14_655106,6553 -GTGGACCGC----------------------------------- asb_U3.1_scaffold_4_494989,49520 -GAGGGCCGC----------------------------------- asb_U3.3_scaffold_4_475125,47534 -GAGGGCCGT----------------------------------- pch_U3.4_scaffold_1_979713,97994 -TTCGCCAGC----------------------------------- pch_U3.1_scaffold_16_598839,5990 -CTTGTCAGC----------------------------------- pch_U3.2_scaffold_4_997110,99734 -CTTGTCAGC----------------------------------- pch_U3.3_scaffold_16_602924,6031 -CTTGTCAGC----------------------------------- ppl_U3.1_scaffold_86_109773,1100 -TGAGCCAGC----------------------------------- ppl_U3.3_scaffold_159_130347,130 -TGAGCCAGC----------------------------------- ppl_U3.2_scaffold_30_415191,4154 -CGGGTCAAC----------------------------------- ppl_U3.4_scaffold_27_312738,3129 -CTTGCCAGC----------------------------------- ppl_U3.5_scaffold_147_172561,172 -CTTGCCAGC----------------------------------- han_U3.1_scaffold_06_619688,6199 -CTCGGCGGC----------------------------------- han_U3.2_scaffold_06_1978666,197 -TGAACCAGC----------------------------------- han_U3.3_scaffold_06_1489084,148 -GTGCCCAGC----------------------------------- cvi_U3.1_scaffold_7_340585,34086 -GACGTTGAG----------------------------------- cvi_U3.2_scaffold_3_330560,33083 -GACGTTGGG----------------------------------- cne_U3.1_adopted_3_1423435,14236 -CTTGGGAGA----------------------------------- cne_U3.2_adopted_8_892818,893067 -TATGGGAGC----------------------------------- tme_U3.1_scaffold_3_32286,32531_ -GAGGACGAG----------------------------------- asp_U3.1_scaffold_59_40266,40528 -GTTGACAGCTGAAGTGACGATGTAAAAGTCGGAGCGGAGGCGTC asp_U3.2_scaffold_63_101395,1016 -GTTGACAGCTGAAGTGACGATGTAAAAGTCGGAACGGAAGTGTC rmi_U3.1_scaffold_3_1260839,1261 -TTAGCTGCC-----------ATGCGATTGAAAAAGAGACCGTGC rmi_U3.2_scaffold_4_2443971,2444 -GGCGTAACT---------GCCATGCGAATGGAAAGAGACCGTGC rgr_U3.1_scaffold_2_1450682,1450 -AGGGCCGGA--------------------------GGCTGTACG rgr_U3.2_scaffold_2_1402058,1402 -AGGGCCGGA--------------------------GGCTGTACG sro_U3.1_scaffold_5_953060,95334 -GAAAGCAGA----------------------------ACTGTGT sro_U3.2_scaffold_5_52594,52825_ -AGACTTGGA----------------------------ACTGTGT sro_U3.3_scaffold_5_41069,41313_ -AGACTCGGA----------------------------ACTGTGT ppa_U3.1 TTGGCTCAGC--------------------------------TGT pti_U3.4_GG705418_754741,754990_ -GGGAC--GC--------------------------------TGT psr_U3.4_Supercontig_1.14_436005 -TGAGCTCGC--------------------------------TGT psr_U3.5_Supercontig_1.14_359366 -TGAGCTTGC--------------------------------TGT psr_U3.1_Supercontig_1.78_49588, -CTTGCTTGC--------------------------------TGT psr_U3.2_Supercontig_1.56_356415 -CTTGCTTGC--------------------------------TGT psr_U3.3_Supercontig_1.1_322826, -TCTGCTTGC--------------------------------TGT pgr_U3.3_supercontig_2_94_165205 -TGAGCTTGC--------------------------------TGT pgr_U3.1_supercontig_2_8_379313, CTGGTTTTGC--------------------------------TGT pgr_U3.2_supercontig_2_8_424713, CTGGTCTTGC--------------------------------TGT pti_U3.5_GG705413_312300,312549_ -CAAGCTGGC--------------------------------TGT pti_U3.7_GG709425_665,908_-_73.9 -TTGGCTGGC--------------------------------TGT pti_U3.6_GG716129_186,418_-_81.3 -TTGGCTGGC--------------------------------TGT pti_U3.1_GG706242_703,946_-_97.8 -TTGGCTGGC--------------------------------TGT pti_U3.2_GG706000_7380,7623___97 -TTGGCTGGC--------------------------------TGT pti_U3.3_GG705419_1215952,121619 -TTGGCTGGC--------------------------------TGT mgl_U3.1_mgl_sf_1_2_45045,45312_ -TCGAATTGC------------------------------TCAGC sre_U3.1_chromosome_3_222005,222 -ATGGCTTGC---------GACCTTTAGTGGGAGCTTGTTCCTGA uma_U3.1_Cont_1.56_33573,33838__ -ATGGCTTGC---------GACCTTAATTGGGAGCTTGTTCCTGA pat_U3.1_scaffold_00022 -ACGGCTTGC---------GACCTTAAGTGGGAGCTTGTTCCTGA wse_U3.1_scaffold_15_63259,63499 -GTCGTGAGG----------------------------------- wse_U3.2_scaffold_15_90061,90300 -GTCGTGAGG----------------------------------- wse_U3.3_scaffold_15_76505,76744 -GTCGTGAGG----------------------------------- sli_U3.1_scaffold_1_539903,54023 -GGCTCGGGT--------------------------GGGTCGCGC abi_U3.1_scaffold_17_263518,2637 -------------GAGACGAGCGTTT------------GTCTGAT pos_U3.1_scaffold_05_1058485,105 -------------GGGTCGAGCGTCT------------GTCTGAT pos_U3.2_scaffold_05_631542,6317 -------------GGATCGAGCGTCT------------GTCTGAT cci_U3.2_scaffold_17_64279,64492 -------------GAGTTGAGCGTCA------------GTCTGAT cci_U3.1_scaffold_173_28928,2915 -------------GAGTTGAGTGTCT------------GTCTGAT sco_U3.1_scaffold_5_503574,50379 -------------GAGCTGGGCGTCT------------GTCTGAT sco_U3.2_scaffold_8_1062161,1062 -------------GAGCTGGGTGTCT------------GTCTGAT lbi_U3.2_scaffold_12_174103,1743 -------------GAGTTCAGCGTCT------------GTCTGAT lbi_U3.4_LG_4_3924377,3924603_-_ -------------GAGTTGAGTGTCT------------GTCTGAT lbi_U3.5_LG_4_4002317,4002541_-_ -------------GAGTCGAGCGTCT------------GTCTGAT lbi_U3.1_LG_4_3997044,3997267_-_ -------------GAGTTGAGCGTCT------------GTCTGAT lbi_U3.3_LG_4_3984740,3984964_-_ -------------GAGTTGAGCGTCT------------GTCTGAT lbi_U3.7_LG_4_4150722,4150946___ -------------GAGTTGAGTGTCC------------GTCTGAT lbi_U3.6_scaffold_20_477047,4772 -------------GAGTTGAGTGTTT------------GTCTGAT sla_U3.3_scaffold_6_338246,33847 -------------GGGTCGAACGTCT------------GTCTGAT sla_U3.5_scaffold_11_128886,1291 -------------GAGGTTAGCGTCT------------GTCTGAT sla_U3.6_scaffold_11_132805,1330 -------------GAGGTTGGCGTCT------------GTCTGAT sla_U3.1_scaffold_8_2248369,2248 -------------GAGGTTGGCGTCT------------GTCTGAT sla_U3.4_scaffold_6_2716474,2716 -------------GGGGATAGCGTCT------------GTCTGAT sla_U3.2_scaffold_6_385578,38580 -------------GGGTCGAGCGTCT------------GTCTGAT asb_U3.4_scaffold_14_935019,9352 -------------GGGGTTGCGGCTT------------GTCTGAT asb_U3.2_scaffold_14_655106,6553 -------------GGGGTTGCGGCTT------------GTCTGAT asb_U3.1_scaffold_4_494989,49520 -------------GGGGTTGAGGCTT------------GTCTGAT asb_U3.3_scaffold_4_475125,47534 -------------AGGGTTGCGACTT------------GTCTGAT pch_U3.4_scaffold_1_979713,97994 -------------GGGTTGGACGTCA------------GTCTGAT pch_U3.1_scaffold_16_598839,5990 -------------GGGTGGAACGTCG------------GTCTGAT pch_U3.2_scaffold_4_997110,99734 -------------GGGTGGAACGTCA------------GTCTGAT pch_U3.3_scaffold_16_602924,6031 -------------GGGTGGAACGTCA------------GTCTGAT ppl_U3.1_scaffold_86_109773,1100 -------------GAGTTGGACGTTT------------GTCTGAT ppl_U3.3_scaffold_159_130347,130 -------------GAGTTGGACGTTT------------GTCTGAT ppl_U3.2_scaffold_30_415191,4154 -------------GAGTTGGGCGTTT------------GTCTGAT ppl_U3.4_scaffold_27_312738,3129 -------------GAGTTGGGCGTAT------------GTCTGAT ppl_U3.5_scaffold_147_172561,172 -------------GAGTTGGGCGTAT------------GTCTGAT han_U3.1_scaffold_06_619688,6199 ---CTTCCTGC--GAGTTGCGTGTTT------------GTCTGAT han_U3.2_scaffold_06_1978666,197 --------------GAGTGCGCGTTT------------GTCTGAT han_U3.3_scaffold_06_1489084,148 -------------GAGTGGGACATCT------------GTCTGAT cvi_U3.1_scaffold_7_340585,34086 -------ATCC--TTCGTGGGCGTTTCATACGAACCGAGTCTGAT cvi_U3.2_scaffold_3_330560,33083 -------ATCT--CTCGTGGGCGTTTCATACGAAGCGAGTCTGAT cne_U3.1_adopted_3_1423435,14236 ---TACCGTGG--GCTGGAGCGGGCT------------TTCTGAT cne_U3.2_adopted_8_892818,893067 ---GACCGTGG--GCTGGAGCGGGCT------------TTCTGAT tme_U3.1_scaffold_3_32286,32531_ -----TCGCGG--GCGAGGGCGGGAT------------TTCTGAT asp_U3.1_scaffold_59_40266,40528 CTTCTGGACCT--GGGATATGAGTTA------------CTCTGAG asp_U3.2_scaffold_63_101395,1016 TTCATGGACCT--GGGATGCGAGTTA------------CTCTGAG rmi_U3.1_scaffold_3_1260839,1261 CGTCGTAGCAT--GAGGTGCGGCTTC------------GTCTGAA rmi_U3.2_scaffold_4_2443971,2444 CGTCGTAGCAT--GAGGTGCGACTTC------------GTCTGAA rgr_U3.1_scaffold_2_1450682,1450 GCGCAGCGCGG--TGGATGCGCACCT------------TTCTGAA rgr_U3.2_scaffold_2_1402058,1402 GCGCAGCGCGG--TGGATGCGCACCT------------TTCTGAA sro_U3.1_scaffold_5_953060,95334 GACGAACGTGT--GGGATGTGTCCTG------------GACTGAG sro_U3.2_scaffold_5_52594,52825_ GACGGACGTGG--TGGATGTGACCTG------------GACTGAG sro_U3.3_scaffold_5_41069,41313_ GACGGACGTGG--TGGATGTGACCTG------------GACTGAG ppa_U3.1 GGGGCTGGCCA--GGGATGCGAGCCA------------ATCTGAA pti_U3.4_GG705418_754741,754990_ GGAGTTGGCCG--GAAATGGGGGCTC------------TTCTGAA psr_U3.4_Supercontig_1.14_436005 GGGCGTGGCCA--GAAATAGAAACTC------------ATCTGAA psr_U3.5_Supercontig_1.14_359366 GGGGGTGGCCA--GAAATAGAAACTC------------ATCTGAA psr_U3.1_Supercontig_1.78_49588, GGAGATGGCCA--GAAATAGAAACTC------------GACTGAA psr_U3.2_Supercontig_1.56_356415 GGGAGTGGCCA--GAAATAGAAACTC------------TTCTGAA psr_U3.3_Supercontig_1.1_322826, GGGAGTGGCCA--GAAATAGAAACT-------------------- pgr_U3.3_supercontig_2_94_165205 GGAAGTGGCCA--GAAATAGAAACTC------------TTCTGAA pgr_U3.1_supercontig_2_8_379313, GGGAATGGCCA--GAAATAGAAACTC------------TTCTGAA pgr_U3.2_supercontig_2_8_424713, GGGAATGGCCA--GAAATAGAAACTC------------TTCTGAA pti_U3.5_GG705413_312300,312549_ GGGAGTGGCCG--GAAACAGAAACTC------------TTCTGAA pti_U3.7_GG709425_665,908_-_73.9 GGCTGTGGCCA--GAAATAGGGACTC------------TTCTGAA pti_U3.6_GG716129_186,418_-_81.3 GGTTGTGGCCA--GAAATAGAGACTC------------TTCTGAA pti_U3.1_GG706242_703,946_-_97.8 GGTTGTGGCCA--GAAATAGAGACTC------------TTCTGAA pti_U3.2_GG706000_7380,7623___97 GGTTGTGGCCA--GAAATAGAGACTC------------TTCTGAA pti_U3.3_GG705419_1215952,121619 GGTTGTGGCCA--GAAATAGAGACTC------------TTCTGAA mgl_U3.1_mgl_sf_1_2_45045,45312_ AGTCGTGGGGG--GGATTGGCCGTCC----------AACTCTGAT sre_U3.1_chromosome_3_222005,222 GCTCCGAGGGA--GGGTTGGCCGCTC----------GTTTCTGAT uma_U3.1_Cont_1.56_33573,33838__ GCTCCGAGGGA--GGGTTGGCCGCTC----------GTTTCTGAT pat_U3.1_scaffold_00022 GCTCCGAGGGA--GGGTTGGCCGCTC----------GTTTCTGAT wse_U3.1_scaffold_15_63259,63499 -------------GATTTGGAGTGCT------------TTCTGAG wse_U3.2_scaffold_15_90061,90300 -------------GATTTGGAGTGCT------------TTCTGAG wse_U3.3_scaffold_15_76505,76744 -------------GATTTGGAGTGCT------------TTCTGAG sli_U3.1_scaffold_1_539903,54023 GGTTCGTGCCATCGGGACGTGCGTCT----------GAGTCTGAG abi_U3.1_scaffold_17_263518,2637 G-GAT pos_U3.1_scaffold_05_1058485,105 G-GAT pos_U3.2_scaffold_05_631542,6317 G-GAT cci_U3.2_scaffold_17_64279,64492 G-GAT cci_U3.1_scaffold_173_28928,2915 G-GAT sco_U3.1_scaffold_5_503574,50379 G-GAT sco_U3.2_scaffold_8_1062161,1062 G-GAT lbi_U3.2_scaffold_12_174103,1743 G-GAT lbi_U3.4_LG_4_3924377,3924603_-_ G-GAT lbi_U3.5_LG_4_4002317,4002541_-_ G-GAT lbi_U3.1_LG_4_3997044,3997267_-_ G-GAT lbi_U3.3_LG_4_3984740,3984964_-_ G-GAT lbi_U3.7_LG_4_4150722,4150946___ G-GAT lbi_U3.6_scaffold_20_477047,4772 G-GAT sla_U3.3_scaffold_6_338246,33847 G-GAT sla_U3.5_scaffold_11_128886,1291 G-GAT sla_U3.6_scaffold_11_132805,1330 G-GAT sla_U3.1_scaffold_8_2248369,2248 G-GAT sla_U3.4_scaffold_6_2716474,2716 G-GAT sla_U3.2_scaffold_6_385578,38580 G-GAT asb_U3.4_scaffold_14_935019,9352 G-GAT asb_U3.2_scaffold_14_655106,6553 G-GAT asb_U3.1_scaffold_4_494989,49520 G-GAT asb_U3.3_scaffold_4_475125,47534 G-GAT pch_U3.4_scaffold_1_979713,97994 G-GAC pch_U3.1_scaffold_16_598839,5990 G-GAT pch_U3.2_scaffold_4_997110,99734 G-GAT pch_U3.3_scaffold_16_602924,6031 G-GAT ppl_U3.1_scaffold_86_109773,1100 G-GAT ppl_U3.3_scaffold_159_130347,130 G-GAT ppl_U3.2_scaffold_30_415191,4154 G-GAT ppl_U3.4_scaffold_27_312738,3129 G-GAT ppl_U3.5_scaffold_147_172561,172 G-GAT han_U3.1_scaffold_06_619688,6199 G-GAT han_U3.2_scaffold_06_1978666,197 G-GAT han_U3.3_scaffold_06_1489084,148 G-GAT cvi_U3.1_scaffold_7_340585,34086 G-GGT cvi_U3.2_scaffold_3_330560,33083 G-GGT cne_U3.1_adopted_3_1423435,14236 C-GAC cne_U3.2_adopted_8_892818,893067 C-GAC tme_U3.1_scaffold_3_32286,32531_ C-GAC asp_U3.1_scaffold_59_40266,40528 A-GGG asp_U3.2_scaffold_63_101395,1016 C-GGG rmi_U3.1_scaffold_3_1260839,1261 G-TCG rmi_U3.2_scaffold_4_2443971,2444 G-CCG rgr_U3.1_scaffold_2_1450682,1450 C-CTG rgr_U3.2_scaffold_2_1402058,1402 C-CTG sro_U3.1_scaffold_5_953060,95334 C-CTG sro_U3.2_scaffold_5_52594,52825_ C-TCG sro_U3.3_scaffold_5_41069,41313_ C-CCG ppa_U3.1 C-TCG pti_U3.4_GG705418_754741,754990_ C-TTG psr_U3.4_Supercontig_1.14_436005 C--TT psr_U3.5_Supercontig_1.14_359366 C--TT psr_U3.1_Supercontig_1.78_49588, C-TTA psr_U3.2_Supercontig_1.56_356415 C--TT psr_U3.3_Supercontig_1.1_322826, ----- pgr_U3.3_supercontig_2_94_165205 C--TT pgr_U3.1_supercontig_2_8_379313, C--TT pgr_U3.2_supercontig_2_8_424713, C--TT pti_U3.5_GG705413_312300,312549_ C--TT pti_U3.7_GG709425_665,908_-_73.9 C--TT pti_U3.6_GG716129_186,418_-_81.3 C--TT pti_U3.1_GG706242_703,946_-_97.8 C--TT pti_U3.2_GG706000_7380,7623___97 C--TT pti_U3.3_GG705419_1215952,121619 C--TT mgl_U3.1_mgl_sf_1_2_45045,45312_ A-GAC sre_U3.1_chromosome_3_222005,222 A-GAC uma_U3.1_Cont_1.56_33573,33838__ A-GAC pat_U3.1_scaffold_00022 A-GAT wse_U3.1_scaffold_15_63259,63499 GCCAT wse_U3.2_scaffold_15_90061,90300 GCCAT wse_U3.3_scaffold_15_76505,76744 GCCAT sli_U3.1_scaffold_1_539903,54023 G-GCG