CLUSTAL W (1.83) multiple sequence alignment cpr_U6.1_scaffold_4_3111633_31 --TTGCCTTCGGGCA--TTTGGTCAAT-------------------- opi_U6.1_scaffold_02_1647674_1 --TCGCCTTCGGGCA--TTTGGTCAAT-------------------- pan_U6.5_chromosome_6_3162152_ --GCCCTCCGGGGCA--TTCGGTCAAT-------------------- ndi_U6.2_scaffold_6_1337123_13 --GCCCTTCGGGGCAA-TTTGGTCAAT-------------------- ncr_U6.3_Supercontig_12.2_1551 -CGCCCTTCGGGGCAA-TTTGGTCAAT-------------------- nte_U6.3_scaffold_4_2763860_27 -CGCCCTTCGGGGCAA-TTTGGTCAAT-------------------- nte_U6.2_scaffold_6_1503154_15 -CGCCCTTCGGGGCAA-TTTGGTCAAT-------------------- ncr_U6.2_Supercontig_12.6_1554 -CGCCCTTCGGGGCAA-TTTGGTCAAT-------------------- ndi_U6.3_scaffold_11_1004016_1 --GCCCTTCGGGGCAA-TTTGGTCAAT-------------------- cgl_U6.2_Supercontig_1.6_14402 --GCCCTTCGGGGCA--TTTGGTCAAT-------------------- mth_U6.2_chromosome_4_3165915_ --GCCCTTCGGGGCA--TTTGGTCAAT-------------------- tar_U6.3_scaffold_3_967163_967 --GCCCTTCGGGGCA--TTTGGTCAAT-------------------- tar_U6.4_scaffold_24_116114_11 --GCCCTTCGGGGCA--TTTGGTCAAT-------------------- tar_U6.2_scaffold_6_119658_119 --GCCCTTCGGGGCA--TTTGGTCAAT-------------------- pan_U6.4_chromosome_2_1295547_ --GCCCTTCGGGGCA--TTTGGTCAAT-------------------- pan_U6.3_chromosome_3_1459301_ --GCCCTTCGGGGCA--TTTGGTCAAT-------------------- pan_U6.2_chromosome_4_1601406_ --GCCCTTCGGGGCA--TTTGGTCAAT-------------------- tte_U6.2_chromosome_1_8594054_ GCCCCCTTCGGGGGGCATTTGGTCAAT-------------------- mor_U6.1_adopted_5_3280691_328 TTCGCCTTC-GGGCA--TTTGGTCAAT-------------------- mor_U6.2_adopted_2_661902_6620 TTCGCCTTC-GGGCA--TTTGGTCAAT-------------------- mgi_U6.1_Supercontig_6.27_2161 --CGCCTTC-GGGCA--TTTGGTCAAT-------------------- mgi_U6.2_Supercontig_6.21_2986 --CGCCTTC-GGGCA--TTTGGTCAAT-------------------- mpo_U6.2_supercont1.5_953628_9 ---GCCTTC-GGGCA--TTTGGTCAAT-------------------- mpo_U6.1_supercont1.2_4183491_ ---GCCTTC-GGGCA--TTTGGTCGAT-------------------- cgl_U6.1_Supercontig_1.1_50170 -CGTCCTTCGGGACA--TTTGGTCAAT-----GTGAGTATTTCCAAG mth_U6.1_chromosome_1_1532871_ -TGTCCTTCGGGACA--TTTGGTCAAT-----GTGAGTATTTCCAAG tte_U6.1_chromosome_5_1808448_ -CGTCCTTCGGGACA--TTTGGTCAAT-----GTGAGTTTCTCCCAG tar_U6.1_scaffold_13_558378_55 -CGCCCTTCGGGGCA--TTTGGTCAAT-----GTAAGTTTTACCTAA pan_U6.1_chromosome_1_3279150_ -CGCCCTTTGGGGCA--TTTGGTCAATTT---GTAAGTTTGGCTCAA ncr_U6.1_Supercontig_12.1_2989 -CGCCCTTCGGGGCAA-TTTGGTCAAT-----GTAAGTTT-GCCCTT nte_U6.1_scaffold_81_6800954_6 -CGCCCTTCGGGGCAA-TTTGGTCAAT-----GTAAGTTT-GCCCGT ndi_U6.1_scaffold_2_2708611_27 -CGCCCTTCGGGGCAA-TTTGGTCAAT-----GTAAGTTT-GCCCGT cpr_U6.2_scaffold_5_3226524_32 -GAAGGATCAAGCACC--GAGTTTAAT-------------------- cpr_U6.1_scaffold_4_3111633_31 ----------------------------------------------- opi_U6.1_scaffold_02_1647674_1 ----------------------------------------------- pan_U6.5_chromosome_6_3162152_ ----------------------------------------------- ndi_U6.2_scaffold_6_1337123_13 ----------------------------------------------- ncr_U6.3_Supercontig_12.2_1551 ----------------------------------------------- nte_U6.3_scaffold_4_2763860_27 ----------------------------------------------- nte_U6.2_scaffold_6_1503154_15 ----------------------------------------------- ncr_U6.2_Supercontig_12.6_1554 ----------------------------------------------- ndi_U6.3_scaffold_11_1004016_1 ----------------------------------------------- cgl_U6.2_Supercontig_1.6_14402 ----------------------------------------------- mth_U6.2_chromosome_4_3165915_ ----------------------------------------------- tar_U6.3_scaffold_3_967163_967 ----------------------------------------------- tar_U6.4_scaffold_24_116114_11 ----------------------------------------------- tar_U6.2_scaffold_6_119658_119 ----------------------------------------------- pan_U6.4_chromosome_2_1295547_ ----------------------------------------------- pan_U6.3_chromosome_3_1459301_ ----------------------------------------------- pan_U6.2_chromosome_4_1601406_ ----------------------------------------------- tte_U6.2_chromosome_1_8594054_ ----------------------------------------------- mor_U6.1_adopted_5_3280691_328 ----------------------------------------------- mor_U6.2_adopted_2_661902_6620 ----------------------------------------------- mgi_U6.1_Supercontig_6.27_2161 ----------------------------------------------- mgi_U6.2_Supercontig_6.21_2986 ----------------------------------------------- mpo_U6.2_supercont1.5_953628_9 ----------------------------------------------- mpo_U6.1_supercont1.2_4183491_ ----------------------------------------------- cgl_U6.1_Supercontig_1.1_50170 CGGTCTAGCGTTGCACTCTGCAA-------AATA-----CTAACC-- mth_U6.1_chromosome_1_1532871_ CGGTTTAGCGTTACGCTCTGTAA-------AACAAGAGACTAACC-- tte_U6.1_chromosome_5_1808448_ TGGTCTTGCGTTGCACTCTGCAG-------AAATA----CTGACA-- tar_U6.1_scaffold_13_558378_55 TGGGCTTGCGTTGCACTCTGCAACTCTGCAAAATGCTAACTCAAC-- pan_U6.1_chromosome_1_3279150_ CCATCT-GCTTCTCACTTTGCCAAT-----AAAA-----CTAACC-- ncr_U6.1_Supercontig_12.1_2989 CGGTTTCGTGGT-CAAGCGGTAT-------GATGTGATGCTAATA-- nte_U6.1_scaffold_81_6800954_6 CGGTTTCGTGGT-CAAGCGGTAT-------GATGTGATGCTAATA-- ndi_U6.1_scaffold_2_2708611_27 TGGTTTTGTGGC-CAAGCGGTAT-------GATGTGATGCTAATA-- cpr_U6.2_scaffold_5_3226524_32 ----------------------------------------------- cpr_U6.1_scaffold_4_3111633_31 --------------TTGAAACGATAC----GTGAGTTCATATCCCAA opi_U6.1_scaffold_02_1647674_1 --------------TTGAAACGATACA---GTATGTCTTCCCCAACG pan_U6.5_chromosome_6_3162152_ --------------TTGAAACAATACA-------------------- ndi_U6.2_scaffold_6_1337123_13 --------------TTGAAACGATACA-------------------- ncr_U6.3_Supercontig_12.2_1551 --------------TTGAAACGATACA-------------------- nte_U6.3_scaffold_4_2763860_27 --------------TTGAAACGATACA-------------------- nte_U6.2_scaffold_6_1503154_15 --------------TTGAAACGATACA-------------------- ncr_U6.2_Supercontig_12.6_1554 --------------TTGAAACGATACA-------------------- ndi_U6.3_scaffold_11_1004016_1 --------------TTGAAACGATACA-------------------- cgl_U6.2_Supercontig_1.6_14402 --------------TTGAAACGATACA-------------------- mth_U6.2_chromosome_4_3165915_ --------------TTGAAACGATACA-------------------- tar_U6.3_scaffold_3_967163_967 --------------TTGAAACGATACA-------------------- tar_U6.4_scaffold_24_116114_11 --------------TTGAAACGATACA-------------------- tar_U6.2_scaffold_6_119658_119 --------------TTGAAACGATACA-------------------- pan_U6.4_chromosome_2_1295547_ --------------TTGAAACGATACA-------------------- pan_U6.3_chromosome_3_1459301_ --------------TTGAAACGATACA-------------------- pan_U6.2_chromosome_4_1601406_ --------------TTGAAACGATACA-------------------- tte_U6.2_chromosome_1_8594054_ --------------TTGAAACGATACA-------------------- mor_U6.1_adopted_5_3280691_328 --------------TTGAAACGATACA-------------------- mor_U6.2_adopted_2_661902_6620 --------------TTGAAACGATACA-------------------- mgi_U6.1_Supercontig_6.27_2161 --------------TTGAAACGATACA-------------------- mgi_U6.2_Supercontig_6.21_2986 --------------TTGAAACGATACA-------------------- mpo_U6.2_supercont1.5_953628_9 --------------TTGAAACGATACA-------------------- mpo_U6.1_supercont1.2_4183491_ --------------TTGAAACGATACA-------------------- cgl_U6.1_Supercontig_1.1_50170 AC-CTCGCAG----TTGAAACGATACA-------------------- mth_U6.1_chromosome_1_1532871_ AC-CTCGCAG----TTGAAACGATACA-------------------- tte_U6.1_chromosome_5_1808448_ GC-CACGCAG----TTGAAACGATACA-------------------- tar_U6.1_scaffold_13_558378_55 AC-CACACAG----TTGAAACGATACA-------------------- pan_U6.1_chromosome_1_3279150_ TCTCTCCCAG------GAAACGATACA-------------------- ncr_U6.1_Supercontig_12.1_2989 AAACCAACAG----TTGAAACGATACA-------------------- nte_U6.1_scaffold_81_6800954_6 AAACAAACAG----TTGAAACGATACA-------------------- ndi_U6.1_scaffold_2_2708611_27 AAATCAATAG----TTGAAACGATACA-------------------- cpr_U6.2_scaffold_5_3226524_32 --------------TTCAAACAGTCAA-------------------- cpr_U6.1_scaffold_4_3111633_31 GGTCGCGCGTTCGATTCAACCTACTAACAGCCTTTGCAG-------- opi_U6.1_scaffold_02_1647674_1 TCCAGCGTTCGATTCCCACTCAAGACACATTTACTAACACAATAAAC pan_U6.5_chromosome_6_3162152_ ----------------------------------------------- ndi_U6.2_scaffold_6_1337123_13 ----------------------------------------------- ncr_U6.3_Supercontig_12.2_1551 ----------------------------------------------- nte_U6.3_scaffold_4_2763860_27 ----------------------------------------------- nte_U6.2_scaffold_6_1503154_15 ----------------------------------------------- ncr_U6.2_Supercontig_12.6_1554 ----------------------------------------------- ndi_U6.3_scaffold_11_1004016_1 ----------------------------------------------- cgl_U6.2_Supercontig_1.6_14402 ----------------------------------------------- mth_U6.2_chromosome_4_3165915_ ----------------------------------------------- tar_U6.3_scaffold_3_967163_967 ----------------------------------------------- tar_U6.4_scaffold_24_116114_11 ----------------------------------------------- tar_U6.2_scaffold_6_119658_119 ----------------------------------------------- pan_U6.4_chromosome_2_1295547_ ----------------------------------------------- pan_U6.3_chromosome_3_1459301_ ----------------------------------------------- pan_U6.2_chromosome_4_1601406_ ----------------------------------------------- tte_U6.2_chromosome_1_8594054_ ----------------------------------------------- mor_U6.1_adopted_5_3280691_328 ----------------------------------------------- mor_U6.2_adopted_2_661902_6620 ----------------------------------------------- mgi_U6.1_Supercontig_6.27_2161 ----------------------------------------------- mgi_U6.2_Supercontig_6.21_2986 ----------------------------------------------- mpo_U6.2_supercont1.5_953628_9 ----------------------------------------------- mpo_U6.1_supercont1.2_4183491_ ----------------------------------------------- cgl_U6.1_Supercontig_1.1_50170 ----------------------------------------------- mth_U6.1_chromosome_1_1532871_ ----------------------------------------------- tte_U6.1_chromosome_5_1808448_ ----------------------------------------------- tar_U6.1_scaffold_13_558378_55 ----------------------------------------------- pan_U6.1_chromosome_1_3279150_ ----------------------------------------------- ncr_U6.1_Supercontig_12.1_2989 ----------------------------------------------- nte_U6.1_scaffold_81_6800954_6 ----------------------------------------------- ndi_U6.1_scaffold_2_2708611_27 ----------------------------------------------- cpr_U6.2_scaffold_5_3226524_32 ----------------------------------------------- cpr_U6.1_scaffold_4_3111633_31 ------AGAGA---AGAT----------------------------- opi_U6.1_scaffold_02_1647674_1 AG-----GAGA---AGAT----------------------------- pan_U6.5_chromosome_6_3162152_ -------GAGA---AAAT----------------------------- ndi_U6.2_scaffold_6_1337123_13 -------GAGA---AGAT----------------------------- ncr_U6.3_Supercontig_12.2_1551 -------GAGA---AGAT----------------------------- nte_U6.3_scaffold_4_2763860_27 -------GAGA---AGAT----------------------------- nte_U6.2_scaffold_6_1503154_15 -------GAGA---AGAT----------------------------- ncr_U6.2_Supercontig_12.6_1554 -------GAGA---AGAT----------------------------- ndi_U6.3_scaffold_11_1004016_1 -------GAGA---AGAT----------------------------- cgl_U6.2_Supercontig_1.6_14402 -------GAGA---AGAT----------------------------- mth_U6.2_chromosome_4_3165915_ -------GAGA---AGAT----------------------------- tar_U6.3_scaffold_3_967163_967 -------GAGA---AGAT----------------------------- tar_U6.4_scaffold_24_116114_11 -------GAGA---AGAT----------------------------- tar_U6.2_scaffold_6_119658_119 -------GAGA---AGAT----------------------------- pan_U6.4_chromosome_2_1295547_ -------GAGA---AGAT----------------------------- pan_U6.3_chromosome_3_1459301_ -------GAGA---AGAT----------------------------- pan_U6.2_chromosome_4_1601406_ -------GAGA---AGAT----------------------------- tte_U6.2_chromosome_1_8594054_ -------GAGA---AGAT----------------------------- mor_U6.1_adopted_5_3280691_328 -------GAGA---AGAT----------------------------- mor_U6.2_adopted_2_661902_6620 -------GAGA---AGAT----------------------------- mgi_U6.1_Supercontig_6.27_2161 -------GAGA---AGAT----------------------------- mgi_U6.2_Supercontig_6.21_2986 -------GAGA---AGAT----------------------------- mpo_U6.2_supercont1.5_953628_9 -------GAGA---AGAT----------------------------- mpo_U6.1_supercont1.2_4183491_ -------GGGA---AGAT----------------------------- cgl_U6.1_Supercontig_1.1_50170 -------GAGA---AGAT----------------------------- mth_U6.1_chromosome_1_1532871_ -------GAGA---AGAT----------------------------- tte_U6.1_chromosome_5_1808448_ -------GAGA---AGAT----------------------------- tar_U6.1_scaffold_13_558378_55 -------GAGA---AGAT----------------------------- pan_U6.1_chromosome_1_3279150_ -------GAGA---AGAT----------------------------- ncr_U6.1_Supercontig_12.1_2989 -------GAGA---AGAT----------------------------- nte_U6.1_scaffold_81_6800954_6 -------GAGA---AGAT----------------------------- ndi_U6.1_scaffold_2_2708611_27 -------GAGA---AGAT----------------------------- cpr_U6.2_scaffold_5_3226524_32 -------GAGA---AGAT---GTAGATATCCTGAAGTCGCGTTTTGG cpr_U6.1_scaffold_4_3111633_31 ----------------------------TAGCATGGCCCCTGCACTA opi_U6.1_scaffold_02_1647674_1 ----------------------------TAGCATGGCCCCTGCACTA pan_U6.5_chromosome_6_3162152_ ----------------------------TAGCATGGCACCTGGACCA ndi_U6.2_scaffold_6_1337123_13 ----------------------------TAGCATGGCCCCTGCACTA ncr_U6.3_Supercontig_12.2_1551 ----------------------------TAGCATGGCCCCTGCACTA nte_U6.3_scaffold_4_2763860_27 ----------------------------TAGCATGGCCCCTGCACTA nte_U6.2_scaffold_6_1503154_15 ----------------------------TAGCATGGCCCCTGCACTA ncr_U6.2_Supercontig_12.6_1554 ----------------------------TAGCATGGCCCCTGCACTA ndi_U6.3_scaffold_11_1004016_1 ----------------------------TAGCATGGCCCCTGCACTA cgl_U6.2_Supercontig_1.6_14402 ----------------------------TAGCATGGCCCCTGCACTA mth_U6.2_chromosome_4_3165915_ ----------------------------TAGCATGGCCCCTGCACTA tar_U6.3_scaffold_3_967163_967 ----------------------------TAGCATGGCCCCTGCACTA tar_U6.4_scaffold_24_116114_11 ----------------------------TAGCATGGCCCCTGCACTA tar_U6.2_scaffold_6_119658_119 ----------------------------TAGCATGGCCCCTGCACTA pan_U6.4_chromosome_2_1295547_ ----------------------------TAGCATGGCCCCTGCACTA pan_U6.3_chromosome_3_1459301_ ----------------------------TAGCATGGCCCCTGCACTA pan_U6.2_chromosome_4_1601406_ ----------------------------TAGCATGGCCCCTGCACTA tte_U6.2_chromosome_1_8594054_ ----------------------------TAGCATGGCCCCTGCACTA mor_U6.1_adopted_5_3280691_328 ----------------------------TAGCATGGCCCCTGCACTA mor_U6.2_adopted_2_661902_6620 ----------------------------TAGCATGGCCCCTGCACTA mgi_U6.1_Supercontig_6.27_2161 ----------------------------TAGCATGGCCCCTGCACTA mgi_U6.2_Supercontig_6.21_2986 ----------------------------TAGCATGGCCCCTGCACTA mpo_U6.2_supercont1.5_953628_9 ----------------------------TAGCATGGCCCCTGCACTA mpo_U6.1_supercont1.2_4183491_ ----------------------------TAGCATGGCCCCTGCACTA cgl_U6.1_Supercontig_1.1_50170 ----------------------------TAGCATGGCCCCTGCACTA mth_U6.1_chromosome_1_1532871_ ----------------------------TAGCATGGCCCCTGCACTA tte_U6.1_chromosome_5_1808448_ ----------------------------TAGCATGGCCCCTGCACTA tar_U6.1_scaffold_13_558378_55 ----------------------------TAGCATGGCCCCTGCACTA pan_U6.1_chromosome_1_3279150_ ----------------------------TAGCATGGCCCCTGCACTA ncr_U6.1_Supercontig_12.1_2989 ----------------------------TAGCATGGCCCCTGCACTA nte_U6.1_scaffold_81_6800954_6 ----------------------------TAGCATGGCCCCTGCACTA ndi_U6.1_scaffold_2_2708611_27 ----------------------------TAGCATGGCCCCTGCACTA cpr_U6.2_scaffold_5_3226524_32 ATTTACATAACTAAAGGCCTTGTGG---TCGCATGGCCCCTGCACTC cpr_U6.1_scaffold_4_3111633_31 AGGATGACACGCTCAATCAAA-GAGAAGCTACCAATTTTT opi_U6.1_scaffold_02_1647674_1 AGGATGACACGCT-ATACAAA-GAGAAGCTACCAATTTTT pan_U6.5_chromosome_6_3162152_ AGGATGACACGCT-ACTCAAA-GAGACGCTCCCAATTTTT ndi_U6.2_scaffold_6_1337123_13 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT ncr_U6.3_Supercontig_12.2_1551 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAAATTTT nte_U6.3_scaffold_4_2763860_27 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT nte_U6.2_scaffold_6_1503154_15 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT ncr_U6.2_Supercontig_12.6_1554 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT ndi_U6.3_scaffold_11_1004016_1 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT cgl_U6.2_Supercontig_1.6_14402 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT mth_U6.2_chromosome_4_3165915_ AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT tar_U6.3_scaffold_3_967163_967 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT tar_U6.4_scaffold_24_116114_11 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT tar_U6.2_scaffold_6_119658_119 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT pan_U6.4_chromosome_2_1295547_ AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT pan_U6.3_chromosome_3_1459301_ AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT pan_U6.2_chromosome_4_1601406_ AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT tte_U6.2_chromosome_1_8594054_ AGGATGACACGCT-ACTCAAA-GAGACGCTACCCATTTTT mor_U6.1_adopted_5_3280691_328 AGGATGACACGCTCAATCAAA-GAGAAGCTCAACATTTTT mor_U6.2_adopted_2_661902_6620 AGGATGACACGCTCAATCAAA-GAGAAGCTCAACATTTTT mgi_U6.1_Supercontig_6.27_2161 AGGATGACACGCTCAATCAAA-GAGAAGCTCAACATTTTT mgi_U6.2_Supercontig_6.21_2986 AGGATGACACGCTCAATCAAA-GAGAAGCTCAACATTTTT mpo_U6.2_supercont1.5_953628_9 AGGATGACACGCTCAATCAAA-GAGAAGCTCAACATTTTT mpo_U6.1_supercont1.2_4183491_ AGGATGACACGCTCAATCAAA-GAGAAGCTCAACATTTTT cgl_U6.1_Supercontig_1.1_50170 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT mth_U6.1_chromosome_1_1532871_ AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT tte_U6.1_chromosome_5_1808448_ AGGATGACACGCT-ACTCAAA-GAGACGCTACCCATTTTT tar_U6.1_scaffold_13_558378_55 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT pan_U6.1_chromosome_1_3279150_ AGGATGACACGCT-ACTCAAA-GAGATGCTAAAGATTTTA ncr_U6.1_Supercontig_12.1_2989 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT nte_U6.1_scaffold_81_6800954_6 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT ndi_U6.1_scaffold_2_2708611_27 AGGATGACACGCT-ACTCAAA-GAGACGCTACCAATTTTT cpr_U6.2_scaffold_5_3226524_32 GGGATGACACCCTCAATCAAAAGAGCAGCTACCAATTTTT