Table of highly similar exons with MORE THAN ONE COMPONENT per group

chr1

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr1_0002	28	(6, 7, 9, 16, 24) --- (20, 22)	(6, 7, 9, 16, 24) --- (20, 22)	chr1:93645919-93744266(+)	-----AA-A------A---B-B-A----
chr1_0009	107	(2, 3, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 23, 24, 26, 30, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 75, 78, 79, 85, 89, 97) --- (29, 34, 48, 87) --- (47, 49, 95) --- (50, 105) --- (81, 83) --- (90, 104) --- (96, 102)	(2, 3, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 23, 24, 26, 30, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 75, 78, 79, 85, 89, 97) --- (29, 34, 48, 87) --- (47, 49, 95) --- (50, 105) --- (81, 83) --- (90, 104) --- (96, 102)	chr1:228395860-228566575(+)	-AA---AAAAAAAAAAA-AAA-AA-A--BA---B-AAAAAAAAAAACBCD------------------------A--AA-E-E-A-B-AF----CGA----G-FD--
chr1_0012	22	(4, 15) --- (10, 19)	(4, 15) --- (10, 19)	chr1:1550794-1565990(+)	---A-----B----A---B---
chr1_0034	35	(1, 15) --- (2, 16) --- (3, 17) --- (4, 18) --- (5, 19) --- (6, 20) --- (7, 10, 21, 24) --- (8, 22) --- (9, 23) --- (11, 25) --- (13, 27) --- (14, 28)	(1, 15) --- (2, 16) --- (3, 17) --- (4, 18) --- (5, 19) --- (6, 20) --- (7, 10, 21, 24) --- (8, 22) --- (9, 23) --- (11, 25) --- (13, 27) --- (14, 28)	chr1:1571099-1655775(-)	ABCDEFGHIGJ-KLABCDEFGHIGJ-KL-------
chr1_0039	72	(18, 41) --- (32, 44)	(18, 41) --- (32, 44)	chr1:215796235-216596738(-)	-----------------A-------------B--------A--B----------------------------
chr1_0049	37	(4, 11, 14, 17, 19, 23, 26, 27, 30, 36) --- (6, 20, 29, 35) --- (7, 10)	(4, 11, 14, 17, 19, 23, 26, 27, 30, 36) --- (6, 20, 29, 35) --- (7, 10)	chr1:17248444-17299474(+)	---A-BC--CA--A--A-AB--A--AA-BA----BA-
chr1_0057	20	(4, 10) --- (5, 6)	(4, 10) --- (5, 6)	chr1:185126191-185260912(+)	---ABB---A----------
chr1_0070	23	(1, 3, 5, 7, 9, 11, 16) --- (12, 17) --- (13, 18) --- (15, 19)	(1, 3, 5, 7, 9, 11, 16) --- (12, 17) --- (13, 18) --- (15, 19)	chr1:146034018-146068245(-)	A-A-A-A-A-ABC-DABCD----
chr1_0128	107	(19, 26, 27, 29, 31, 32, 34, 35, 36, 37, 38, 40, 42, 43, 44, 45, 46, 50, 51, 53, 57, 58, 59, 60, 61, 62, 64, 65, 67, 68, 69, 70, 71, 72, 78, 79, 81) --- (20, 24) --- (73, 98) --- (83, 86) --- (88, 89) --- (99, 101, 103, 105)	(19, 26, 27, 29, 31, 32, 34, 35, 36, 37, 38, 40, 42, 43, 44, 45, 46, 50, 51, 53, 57, 58, 59, 60, 61, 62, 64, 65, 67, 68, 69, 70, 71, 72, 78, 79, 81) --- (20, 24) --- (73, 98) --- (83, 86) --- (88, 89) --- (99, 101, 103, 105)	chr1:185703682-186160085(+)	------------------AB---B-AA-A-AA-AAAAA-A-AAAAA---AA-A---AAAAAA-AA-AAAAAAC----AA-A-D--D-EE--------CF-F-F-F--
chr1_0180	86	(1, 6) --- (2, 7) --- (3, 8) --- (4, 9) --- (5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64, 66, 68, 70, 72, 74, 76, 78, 80, 82, 84, 86)	(1, 6) --- (2, 7) --- (3, 8) --- (4, 9) --- (5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64, 66, 68, 70, 72, 74, 76, 78, 80, 82, 84, 86)	chr1:145293370-145368682(+)	ABCDEABCDE-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E
chr1_0186	85	(18, 30) --- (32, 55) --- (36, 38) --- (48, 68) --- (51, 72)	(18, 30) --- (32, 55) --- (36, 38) --- (48, 68) --- (51, 72)	chr1:225117362-225586996(+)	-----------------A-----------A-B---C-C---------D--E---B------------D---E-------------
chr1_0201	23	(1, 3, 5, 7, 9, 11, 16) --- (12, 17) --- (13, 18) --- (15, 19)	(1, 3, 5, 7, 9, 11, 16) --- (12, 17) --- (13, 18) --- (15, 19)	chr1:147575799-147610081(-)	A-A-A-A-A-ABC-DABCD----
chr1_0216	47	(2, 10, 18, 26, 34) --- (3, 11, 19, 27, 35) --- (4, 12, 20, 28, 36) --- (5, 9, 13, 17, 21, 25, 29, 33, 37, 41) --- (6, 14, 22, 30, 38) --- (7, 15, 23, 31, 39) --- (8, 16, 24, 32, 40)	(2, 10, 18, 26, 34) --- (3, 11, 19, 27, 35) --- (4, 12, 20, 28, 36) --- (5, 9, 13, 17, 21, 25, 29, 33, 37, 41) --- (6, 14, 22, 30, 38) --- (7, 15, 23, 31, 39) --- (8, 16, 24, 32, 40)	chr1:207669472-207815109(+)	-ABCDEFGDABCDEFGDABCDEFGDABCDEFGDABCDEFGD------
chr1_0239	12	(3, 9) --- (4, 10)	(3, 9) --- (4, 10)	chr1:207818457-207897034(+)	--AB----AB--
chr1_0251	47	(5, 14) --- (6, 15)	(5, 14) --- (6, 15)	chr1:181452715-181770713(+)	----AB-------AB--------------------------------
chr1_0252	20	(3, 7, 11, 15) --- (6, 10, 14) --- (9, 13)	(3, 7, 11, 15) --- (6, 10, 14) --- (9, 13)	chr1:207627644-207663238(+)	--A--BA-CBA-CBA-----
chr1_0278	10	(1, 10) --- (6, 7)	(1, 10) --- (6, 7)	chr1:1288071-1293915(-)	A----BB--A
chr1_0288	15	(6, 10) --- (7, 9)	(6, 10) --- (7, 9)	chr1:17081401-17090975(-)	-----AB-BA-----
chr1_0297	26	(2, 3) --- (4, 19)	(2, 3) --- (4, 19)	chr1:229577044-229644088(-)	-AAB--------------B-------
chr1_0299	43	(12, 27) --- (14, 18) --- (24, 34)	(12, 27) --- (14, 18) --- (24, 34)	chr1:62208148-62629589(+)	-----------A-B---B-----C--A------C---------
chr1_0306	51	(17, 27) --- (21, 35, 48)	(17, 27) --- (21, 35, 48)	chr1:186280787-186344457(-)	----------------A---B-----A-------B------------B---
chr1_0316	29	(1, 3, 5, 7, 9, 14, 19) --- (10, 15, 20) --- (11, 16, 21) --- (12, 17, 22) --- (13, 18, 23)	(1, 3, 5, 7, 9, 14, 19) --- (10, 15, 20) --- (11, 16, 21) --- (12, 17, 22) --- (13, 18, 23)	chr1:16890411-16939982(-)	A-A-A-A-ABCDEABCDEABCDE------
chr1_0328	20	(4, 9, 16) --- (8, 11)	(4, 9, 16) --- (8, 11)	chr1:202163117-202288888(+)	---A---BA-B----A----
chr1_0331	105	(29, 64) --- (73, 97) --- (80, 90)	(29, 64) --- (73, 97) --- (80, 90)	chr1:237205701-237997288(+)	----------------------------A----------------------------------A--------B------C---------C------B--------
chr1_0349	34	(25, 30) --- (28, 33)	(25, 30) --- (28, 33)	chr1:43996546-44089342(+)	------------------------A--B-A--B-
chr1_0371	71	(3, 5, 8, 10, 15, 16, 18, 20, 21, 22, 25, 27, 30, 36, 39, 40, 41, 53, 55, 59) --- (11, 47)	(3, 5, 8, 10, 15, 16, 18, 20, 21, 22, 25, 27, 30, 36, 39, 40, 41, 53, 55, 59) --- (11, 47)	chr1:32117847-32169768(-)	--A-A--A-AB---AA-A-AAA--A-A--A-----A--AAA-----B-----A-A---A------------
chr1_0380	97	(4, 11) --- (12, 90, 91) --- (21, 31, 33, 35, 37, 39, 41, 43, 45, 47, 49) --- (30, 32, 34, 36, 38, 40, 42, 46, 48) --- (50, 52) --- (58, 70, 78) --- (61, 71, 81) --- (62, 72, 73) --- (69, 79)	(4, 11) --- (12, 90, 91) --- (21, 31, 33, 35, 37, 39, 41, 43, 45, 47, 49) --- (30, 32, 34, 36, 38, 40, 42, 46, 48) --- (50, 52) --- (58, 70, 78) --- (61, 71, 81) --- (62, 72, 73) --- (69, 79)	chr1:22148737-22263750(-)	---A------AB--------C--------DCDCDCDCDCDCDC-CDCDCE-E-----F--GH------IFGHH----FI-G--------BB------
chr1_0527	44	(6, 16) --- (14, 23, 40)	(6, 16) --- (14, 23, 40)	chr1:201008640-201081694(-)	-----A-------B-A------B----------------B----
chr1_0545	53	(10, 16, 42) --- (15, 17)	(10, 16, 42) --- (15, 17)	chr1:235824344-236030220(-)	---------A----BAB------------------------A-----------
chr1_0578	37	(3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 34) --- (27, 28, 30, 33)	(3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 34) --- (27, 28, 30, 33)	chr1:3404512-3528059(-)	--AAAAAAAAAAAAAAAAAAAAAAA-BB-B--BA---
chr1_0625	32	(6, 7, 11, 13, 15, 20, 21, 28, 30) --- (24, 27)	(6, 7, 11, 13, 15, 20, 21, 28, 30) --- (24, 27)	chr1:115397454-115537988(+)	-----AA---A-A-A----AA--B--BA-A--
chr1_0649	12	(3, 4) --- (6, 11)	(3, 4) --- (6, 11)	chr1:155290639-155300909(+)	--AA-B----B-
chr1_0657	70	(9, 32, 50, 67) --- (21, 41, 62) --- (27, 36, 55, 56) --- (31, 40, 46) --- (47, 53) --- (49, 52)	(9, 32, 50, 67) --- (21, 41, 62) --- (27, 36, 55, 56) --- (31, 40, 46) --- (47, 53) --- (49, 52)	chr1:33979608-34631443(-)	--------A-----------B-----C---DA---C---DB----DE-FA-FE-CC-----B----A---
chr1_0668	34	(10, 12, 13, 14, 20, 23, 24, 25, 26, 30, 31) --- (28, 29)	(10, 12, 13, 14, 20, 23, 24, 25, 26, 30, 31) --- (28, 29)	chr1:120454177-120612276(-)	---------A-AAA-----A--AAAA-BBAA---
chr1_0682	37	(5, 11) --- (17, 23)	(5, 11) --- (17, 23)	chr1:24382531-24438665(-)	----A-----A-----B-----B--------------
chr1_0837	9	(2, 5) --- (3, 6) --- (4, 7)	(2, 5) --- (3, 6) --- (4, 7)	chr1:101185296-101204599(+)	-ABCABC--
chr1_0860	36	(4, 6, 7, 8, 9, 10, 12, 17) --- (13, 24)	(4, 6, 7, 8, 9, 10, 12, 17) --- (13, 24)	chr1:955502-991492(+)	---A-AAAAA-AB---A------B------------
chr1_0985	15	(3, 7) --- (4, 8) --- (5, 9)	(3, 7) --- (4, 8) --- (5, 9)	chr1:12123433-12204262(+)	--ABC-ABC------
chr1_1161	21	(2, 7) --- (3, 8) --- (4, 9) --- (5, 10) --- (6, 11, 13, 15, 17, 19, 21)	(2, 7) --- (3, 8) --- (4, 9) --- (5, 10) --- (6, 11, 13, 15, 17, 19, 21)	chr1:144614958-144828810(+)	-ABCDEABCDE-E-E-E-E-E
chr1_1329	16	(2, 3) --- (6, 16)	(2, 3) --- (6, 16)	chr1:36771993-36786948(+)	-AA--B---------B

chr10

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr10_0022	68	(6, 9, 11, 13, 14, 15, 18, 21, 23, 25, 27, 28, 30, 31, 33, 38, 39, 41, 43, 45, 48, 52, 54) --- (26, 36) --- (37, 56)	(6, 9, 11, 13, 14, 15, 18, 21, 23, 25, 27, 28, 30, 31, 33, 38, 39, 41, 43, 45, 48, 52, 54) --- (26, 36) --- (37, 56)	chr10:73156703-73575702(+)	-----A--A-A-AAA--A--A-A-ABAA-AA-A--BCAA-A-A-A--A---A-A-C------------
chr10_0046	24	(9, 17) --- (10, 18) --- (11, 19) --- (12, 20) --- (13, 21) --- (14, 22)	(9, 17) --- (10, 18) --- (11, 19) --- (12, 20) --- (13, 21) --- (14, 22)	chr10:71029755-71161635(+)	--------ABCDEF--ABCDEF--
chr10_0088	42	(3, 8, 13, 19, 24, 27, 33, 35, 37) --- (4, 9, 15, 26) --- (5, 10) --- (7, 12, 18, 23) --- (22, 28)	(3, 8, 13, 19, 24, 27, 33, 35, 37) --- (4, 9, 15, 26) --- (5, 10) --- (7, 12, 18, 23) --- (22, 28)	chr10:115348583-115423805(-)	--ABC-DABC-DA-B--DA--EDA-BAE----A-A-A-----
chr10_0105	62	(18, 47) --- (60, 62)	(18, 47) --- (60, 62)	chr10:49893517-50191000(+)	-----------------A----------------------------A------------B-B
chr10_0116	29	(6, 17) --- (7, 18) --- (8, 19) --- (9, 20) --- (10, 21) --- (11, 22) --- (12, 24) --- (13, 25)	(6, 17) --- (7, 18) --- (8, 19) --- (9, 20) --- (10, 21) --- (11, 22) --- (12, 24) --- (13, 25)	chr10:51026326-51371316(-)	-----ABCDEFGH---ABCDEF-GH----
chr10_0140	27	(2, 7, 8, 15, 17) --- (6, 14)	(2, 7, 8, 15, 17) --- (6, 14)	chr10:93558150-93625231(+)	-A---BAA-----BA-A----------
chr10_0166	32	(8, 10, 11, 29) --- (13, 14, 15, 16, 18)	(8, 10, 11, 29) --- (13, 14, 15, 16, 18)	chr10:21068904-21463116(-)	-------A-AA-BBBB-B----------A---
chr10_0170	16	(7, 9) --- (12, 14)	(7, 9) --- (12, 14)	chr10:115881973-115933938(-)	------A-A--B-B--
chr10_0260	12	(8, 10) --- (9, 11)	(8, 10) --- (9, 11)	chr10:63952955-64028466(-)	-------ABAB-
chr10_0263	56	(2, 4, 5, 6, 14, 17, 20, 22, 26, 31, 33, 35) --- (11, 18) --- (45, 46)	(2, 4, 5, 6, 14, 17, 20, 22, 26, 31, 33, 35) --- (11, 18) --- (45, 46)	chr10:105791047-105845638(-)	-A-AAA----B--A--AB-A-A---A----A-A-A---------CC----------
chr10_0301	30	(6, 16) --- (7, 29)	(6, 16) --- (7, 29)	chr10:134973970-135039916(+)	-----AB--------A------------B-
chr10_0380	40	(9, 21, 22, 23, 24, 25, 26, 27) --- (13, 16) --- (28, 29, 30, 31, 32, 33, 34, 35)	(9, 21, 22, 23, 24, 25, 26, 27) --- (13, 16) --- (28, 29, 30, 31, 32, 33, 34, 35)	chr10:32735040-33171791(+)	--------A---B--B----AAAAAAACCCCCCCC-----
chr10_0406	36	(4, 6) --- (8, 12, 18, 24, 30) --- (9, 13, 19, 25, 31) --- (11, 15, 17, 21, 23, 27, 29)	(4, 6) --- (8, 12, 18, 24, 30) --- (9, 13, 19, 25, 31) --- (11, 15, 17, 21, 23, 27, 29)	chr10:37414784-37521495(+)	---A-A-BC-DBC-D-DBC-D-DBC-D-DBC-----
chr10_0424	28	(1, 14, 16) --- (19, 24) --- (21, 26)	(1, 14, 16) --- (19, 24) --- (21, 26)	chr10:124516209-124557161(+)	A------------A-A--B-C--B-C--
chr10_0428	18	(2, 10) --- (3, 11) --- (6, 14) --- (7, 15) --- (8, 16) --- (9, 17)	(2, 10) --- (3, 11) --- (6, 14) --- (7, 15) --- (8, 16) --- (9, 17)	chr10:70980058-71027314(+)	-AB--CDEFAB--CDEF-

chr11

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr11_0073	33	(3, 32) --- (7, 10, 15) --- (18, 27, 33)	(3, 32) --- (7, 10, 15) --- (18, 27, 33)	chr11:1012823-1036706(-)	--A---B--B----B--C--------C----AC
chr11_0159	20	(2, 4, 6, 12) --- (9, 11) --- (15, 16)	(2, 4, 6, 12) --- (9, 11) --- (15, 16)	chr11:61025758-61062788(-)	-A-A-A--B-BA--CC----
chr11_0205	23	(2, 3, 6, 7, 10, 11) --- (18, 19)	(2, 3, 6, 7, 10, 11) --- (18, 19)	chr11:68080107-68216739(+)	-AA--AA--AA------BB----
chr11_0241	28	(1, 5, 6, 7, 10, 13, 14, 16, 17) --- (19, 26)	(1, 5, 6, 7, 10, 13, 14, 16, 17) --- (19, 26)	chr11:65306030-65325699(-)	A---AAA--A--AA-AA-B------B--
chr11_0279	37	(18, 19, 21) --- (20, 25, 27)	(18, 19, 21) --- (20, 25, 27)	chr11:64591663-64612041(-)	-----------------AABA---B-B----------
chr11_0282	13	(2, 10) --- (8, 11)	(2, 10) --- (8, 11)	chr11:104896245-104972158(-)	-A-----B-AB--
chr11_0292	27	(7, 18, 21) --- (9, 13, 14, 20) --- (10, 11, 16, 19)	(7, 18, 21) --- (9, 13, 14, 20) --- (10, 11, 16, 19)	chr11:64107689-64125005(+)	------A-BCC-BB-C-ACBA------
chr11_0315	38	(7, 18, 24) --- (9, 13, 15, 19, 25) --- (10, 14, 20, 26) --- (30, 31, 34, 35) --- (32, 33)	(7, 18, 24) --- (9, 13, 15, 19, 25) --- (10, 14, 20, 26) --- (30, 31, 34, 35) --- (32, 33)	chr11:46878418-46940076(-)	------A-BC--BCB--ABC---ABC---DDEEDD---
chr11_0328	50	(5, 11) --- (7, 16, 17) --- (9, 20) --- (24, 38)	(5, 11) --- (7, 16, 17) --- (9, 20) --- (24, 38)	chr11:1074874-1104417(+)	----A-B-C-A----BB--C---D-------------D------------
chr11_0333	48	(23, 31) --- (24, 30) --- (25, 26)	(23, 31) --- (24, 30) --- (25, 26)	chr11:121322960-121504471(+)	----------------------ABCC---BA-----------------
chr11_0433	49	(9, 38) --- (11, 22) --- (13, 48) --- (45, 49)	(9, 38) --- (11, 22) --- (13, 48) --- (45, 49)	chr11:1244295-1283406(+)	--------A-B-C--------B---------------A------D--CD
chr11_0435	19	(6, 14) --- (16, 17)	(6, 14) --- (16, 17)	chr11:105480799-105852819(+)	-----A-------A-BB--
chr11_0447	21	(4, 15) --- (6, 8)	(4, 15) --- (6, 8)	chr11:6642557-6677074(-)	---A-B-B------A------
chr11_0489	20	(5, 17) --- (10, 16)	(5, 17) --- (10, 16)	chr11:93754377-93847374(+)	----A----B-----BA---
chr11_0561	20	(3, 12) --- (4, 14) --- (5, 15) --- (7, 17)	(3, 12) --- (4, 14) --- (5, 15) --- (7, 17)	chr11:5617346-5687608(+)	--ABC-D----A-BC-D---

chr12

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr12_0076	52	(6, 36) --- (8, 9)	(6, 36) --- (8, 9)	chr12:2162415-2807115(+)	-----A-BB--------------------------A----------------
chr12_0082	23	(9, 13, 17, 21) --- (14, 18)	(9, 13, 17, 21) --- (14, 18)	chr12:12268962-12419811(-)	--------A---AB--AB--A--
chr12_0087	31	(13, 20) --- (15, 21)	(13, 20) --- (15, 21)	chr12:53440809-53458160(+)	------------A-B----AB----------
chr12_0091	20	(11, 14) --- (16, 17)	(11, 14) --- (16, 17)	chr12:59265937-59314262(-)	----------A--A-BB---
chr12_0115	54	(2, 18) --- (12, 16, 17, 48) --- (14, 15) --- (23, 36, 49)	(2, 18) --- (12, 16, 17, 48) --- (14, 15) --- (23, 36, 49)	chr12:88442790-88535993(-)	-A---------B-CCBBA----D------------D-----------BD-----
chr12_0215	48	(13, 26, 27, 28) --- (17, 42) --- (38, 41) --- (43, 44)	(13, 26, 27, 28) --- (17, 42) --- (38, 41) --- (43, 44)	chr12:124808961-125020149(-)	------------A---B--------AAA---------C--CBDD----
chr12_0227	31	(9, 18) --- (10, 19)	(9, 18) --- (10, 19)	chr12:56522053-56538452(+)	--------AB-------AB------------
chr12_0234	12	(4, 5) --- (7, 8)	(4, 5) --- (7, 8)	chr12:112563348-112591407(+)	---AA-BB----
chr12_0238	89	(2, 16, 17, 18, 19, 20, 21, 48, 50, 51, 53, 54, 63, 64, 65, 66, 67, 68, 69, 70, 71, 73) --- (5, 56, 75) --- (12, 13, 25, 26, 27, 30, 31, 37, 38, 59, 60, 61, 77, 78) --- (15, 41)	(2, 16, 17, 18, 19, 20, 21, 48, 50, 51, 53, 54, 63, 64, 65, 66, 67, 68, 69, 70, 71, 73) --- (5, 56, 75) --- (12, 13, 25, 26, 27, 30, 31, 37, 38, 59, 60, 61, 77, 78) --- (15, 41)	chr12:57522281-57607123(+)	-A--B------CC-DAAAAAA---CCC--CC-----CC--D------A-AA-AA-B--CCC-AAAAAAAAA-A-B-CC-----------
chr12_0249	29	(5, 22) --- (10, 11, 13, 26) --- (17, 25)	(5, 22) --- (10, 11, 13, 26) --- (17, 25)	chr12:93166285-93323107(-)	----A----BB-B---C----A--CB---
chr12_0299	28	(7, 13) --- (24, 25)	(7, 13) --- (24, 25)	chr12:56631591-56652143(-)	------A-----A----------BB---
chr12_0341	25	(8, 12) --- (22, 23)	(8, 12) --- (22, 23)	chr12:122755980-122907116(-)	-------A---A---------BB--
chr12_0363	30	(1, 10) --- (18, 20)	(1, 10) --- (18, 20)	chr12:54789046-54813050(-)	A--------A-------B-B----------
chr12_0396	32	(2, 31) --- (11, 30) --- (14, 24)	(2, 31) --- (11, 30) --- (14, 24)	chr12:123320038-123347507(+)	-A--------B--C---------C-----BA-
chr12_0438	69	(8, 52) --- (19, 53, 67) --- (21, 38)	(8, 52) --- (19, 53, 67) --- (21, 38)	chr12:103981068-104160500(+)	-------A----------B-C----------------C-------------AB-------------B--
chr12_0455	17	(7, 11) --- (8, 12) --- (9, 13)	(7, 11) --- (8, 12) --- (9, 13)	chr12:48055715-48099844(-)	------ABC-ABC----
chr12_0530	22	(15, 18, 20) --- (16, 19)	(15, 18, 20) --- (16, 19)	chr12:111471828-111788356(+)	--------------AB-ABA--
chr12_0563	13	(1, 5) --- (2, 7) --- (4, 9)	(1, 5) --- (2, 7) --- (4, 9)	chr12:10998449-11324210(-)	AB-CA-B-C----
chr12_0580	11	(3, 8) --- (4, 9) --- (5, 10)	(3, 8) --- (4, 9) --- (5, 10)	chr12:113416273-113449527(+)	--ABC--ABC-
chr12_0733	16	(2, 7, 12) --- (3, 8, 13) --- (4, 9, 14) --- (5, 10, 15)	(2, 7, 12) --- (3, 8, 13) --- (4, 9, 14) --- (5, 10, 15)	chr12:113376248-113411052(+)	-ABCD-ABCD-ABCD-

chr13

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr13_0001	48	(3, 5, 19, 20, 22, 25, 28, 31, 32, 36, 38, 39, 40, 42) --- (17, 21, 24, 27, 29, 30, 33, 34, 43, 44, 45, 48)	(3, 5, 19, 20, 22, 25, 28, 31, 32, 36, 38, 39, 40, 42) --- (17, 21, 24, 27, 29, 30, 33, 34, 43, 44, 45, 48)	chr13:110959630-111165371(+)	--A-A-----------B-AABA-BA-BABBAABB-A-AAA-ABBB--B
chr13_0012	44	(3, 35) --- (10, 18) --- (22, 29)	(3, 35) --- (10, 18) --- (22, 29)	chr13:101706129-102068813(-)	--A------B-------B---C------C-----A---------
chr13_0061	57	(39, 45) --- (43, 51)	(39, 45) --- (43, 51)	chr13:99445740-99738660(-)	--------------------------------------A---B-A-----B------
chr13_0237	11	(3, 5) --- (6, 8, 10)	(3, 5) --- (6, 8, 10)	chr13:102104965-102368793(+)	--A-AB-B-B-
chr13_0283	10	(4, 5, 7) --- (6, 8)	(4, 5, 7) --- (6, 8)	chr13:92000073-92006829(+)	---AABAB--

chr14

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr14_0010	40	(3, 4) --- (12, 17)	(3, 4) --- (12, 17)	chr14:23881947-23904870(-)	--AA-------B----B-----------------------
chr14_0025	116	(15, 30) --- (45, 74) --- (83, 93)	(15, 30) --- (45, 74) --- (83, 93)	chr14:64319682-64693165(+)	--------------A--------------A--------------B----------------------------B--------C---------C-----------------------
chr14_0067	36	(4, 29) --- (5, 27) --- (9, 13, 16, 17, 20) --- (10, 11, 12, 14, 19)	(4, 29) --- (5, 27) --- (9, 13, 16, 17, 20) --- (10, 11, 12, 14, 19)	chr14:74964888-75079034(-)	---AB---CDDDCD-CC-DC------B-A-------
chr14_0103	46	(8, 15, 21, 24, 25) --- (9, 28, 31) --- (16, 22) --- (27, 30)	(8, 15, 21, 24, 25) --- (9, 28, 31) --- (16, 22) --- (27, 30)	chr14:56046924-56151294(+)	-------AB-----AC----AC-AA-DB-DB---------------
chr14_0179	26	(6, 18) --- (7, 9, 10, 11, 12, 15, 19)	(6, 18) --- (7, 9, 10, 11, 12, 15, 19)	chr14:105608076-105635161(-)	-----AB-BBBB--B--AB-------
chr14_0210	40	(9, 19) --- (15, 17, 21)	(9, 19) --- (15, 17, 21)	chr14:24521205-24538937(+)	--------A-----B-B-A-B-------------------
chr14_0311	13	(5, 11) --- (6, 9)	(5, 11) --- (6, 9)	chr14:69951470-69995215(+)	----AB--B-A--
chr14_0362	8	(2, 6) --- (3, 7)	(2, 6) --- (3, 7)	chr14:105941130-105946500(+)	-AB--AB-

chr15

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr15_0011	86	(35, 78) --- (41, 52) --- (42, 53) --- (43, 54) --- (46, 57)	(35, 78) --- (41, 52) --- (42, 53) --- (43, 54) --- (46, 57)	chr15:62144591-62352647(-)	----------------------------------A-----BCD--E-----BCD--E--------------------A--------
chr15_0014	78	(10, 11) --- (12, 13)	(10, 11) --- (12, 13)	chr15:63900817-64126147(-)	---------AABB-----------------------------------------------------------------
chr15_0044	104	(35, 72) --- (55, 63)	(35, 72) --- (55, 63)	chr15:33603176-34158302(+)	----------------------------------A-------------------B-------B--------A--------------------------------
chr15_0070	23	(7, 18) --- (21, 22)	(7, 18) --- (21, 22)	chr15:75661721-75748124(-)	------A----------A--BB-
chr15_0076	47	(2, 5) --- (26, 46)	(2, 5) --- (26, 46)	chr15:43235102-43398286(-)	-A--A--------------------B-------------------B-
chr15_0078	68	(11, 21, 31, 46, 49, 50, 58, 61, 66) --- (12, 60) --- (14, 59, 62) --- (22, 30) --- (27, 54) --- (38, 53)	(11, 21, 31, 46, 49, 50, 58, 61, 66) --- (12, 60) --- (14, 59, 62) --- (22, 30) --- (27, 54) --- (38, 53)	chr15:42140344-42186275(-)	----------AB-C------AD----E--DA------F-------A--AA--FE---ACBAC---A--
chr15_0088	16	(1, 3) --- (7, 8)	(1, 3) --- (7, 8)	chr15:25068793-25223729(+)	A-A---BB--------
chr15_0139	22	(7, 14, 17) --- (9, 10) --- (15, 16)	(7, 14, 17) --- (9, 10) --- (15, 16)	chr15:39873279-39889667(+)	------A-BB---ACCA-----
chr15_0175	25	(2, 25) --- (6, 9)	(2, 25) --- (6, 9)	chr15:34817484-34875771(-)	-A---B--B---------------A
chr15_0219	93	(11, 30) --- (12, 31, 79) --- (13, 32) --- (14, 33) --- (15, 34)	(11, 30) --- (12, 31, 79) --- (13, 32) --- (14, 33) --- (15, 34)	chr15:28356189-28567295(-)	----------ABCDE--------------ABCDE--------------------------------------------B--------------
chr15_0407	18	(4, 8) --- (5, 9) --- (6, 10)	(4, 8) --- (5, 9) --- (6, 10)	chr15:89346673-89418585(+)	---ABC-ABC--------
chr15_0419	10	(3, 5) --- (4, 6)	(3, 5) --- (4, 6)	chr15:73976621-74006859(+)	--ABAB----

chr16

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr16_0001	20	(2, 3, 5, 10) --- (6, 8, 9, 11, 12, 13, 14)	(2, 3, 5, 10) --- (6, 8, 9, 11, 12, 13, 14)	chr16:3589037-3627392(-)	-AA-AB-BBABBBB------
chr16_0051	25	(10, 11) --- (13, 14)	(10, 11) --- (13, 14)	chr16:69796273-69975643(+)	---------AA-BB-----------
chr16_0056	51	(15, 18, 30, 46, 51) --- (19, 28) --- (27, 31) --- (49, 50)	(15, 18, 30, 46, 51) --- (19, 28) --- (27, 31) --- (49, 50)	chr16:88781746-88851372(-)	--------------A--AB-------CB-AC--------------A--DDA
chr16_0083	49	(13, 37) --- (14, 28) --- (19, 47) --- (24, 39) --- (30, 34)	(13, 37) --- (14, 28) --- (19, 47) --- (24, 39) --- (30, 34)	chr16:57023409-57117436(+)	------------AB----C----D---B-E---E--A-D-------C--
chr16_0157	12	(1, 5) --- (3, 4)	(1, 5) --- (3, 4)	chr16:67691415-67694718(-)	A-BBA-------
chr16_0160	35	(8, 14) --- (18, 34) --- (30, 33)	(8, 14) --- (18, 34) --- (30, 33)	chr16:1203240-1271771(+)	-------A-----A---B-----------C--CB-
chr16_0175	26	(5, 6) --- (11, 17)	(5, 6) --- (11, 17)	chr16:67312075-67323402(+)	----AA----B-----B---------
chr16_0204	46	(12, 13) --- (39, 40, 45)	(12, 13) --- (39, 40, 45)	chr16:2138710-2185899(-)	-----------AA-------------------------BB----B-
chr16_0253	34	(6, 19) --- (11, 29)	(6, 19) --- (11, 29)	chr16:22103862-22168280(+)	-----A----B-------A---------B-----
chr16_0410	28	(1, 9) --- (16, 18)	(1, 9) --- (16, 18)	chr16:4404543-4466639(-)	A-------A------B-B----------
chr16_0421	13	(1, 7) --- (2, 3)	(1, 7) --- (2, 3)	chr16:28915742-28936532(-)	ABB---A------
chr16_0571	31	(8, 29) --- (11, 31)	(8, 29) --- (11, 31)	chr16:16243422-16317328(-)	-------A--B-----------------A-B
chr16_0600	7	(3, 5) --- (4, 6)	(3, 5) --- (4, 6)	chr16:72088507-72094957(+)	--ABAB-

chr17

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr17_0001	33	(3, 30) --- (8, 26)	(3, 30) --- (8, 26)	chr17:4736634-4801355(+)	--A----B-----------------B---A---
chr17_0009	39	(5, 31) --- (7, 13) --- (11, 30)	(5, 31) --- (7, 13) --- (11, 30)	chr17:48638448-48704431(+)	----A-B---C-B----------------CA--------
chr17_0014	26	(3, 16) --- (5, 18) --- (6, 19) --- (7, 20) --- (8, 21) --- (9, 22) --- (10, 23) --- (11, 24)	(3, 16) --- (5, 18) --- (6, 19) --- (7, 20) --- (8, 21) --- (9, 22) --- (10, 23) --- (11, 24)	chr17:61554433-61574979(+)	--A-BCDEFGH----A-BCDEFGH--
chr17_0059	40	(3, 18) --- (5, 11, 15)	(3, 18) --- (5, 11, 15)	chr17:10293641-10325267(-)	--A-B-----B---B--A----------------------
chr17_0066	12	(4, 9) --- (5, 7)	(4, 9) --- (5, 7)	chr17:4337218-4391498(+)	---AB-B-A---
chr17_0071	13	(4, 9, 10, 11, 12) --- (6, 8)	(4, 9, 10, 11, 12) --- (6, 8)	chr17:42422490-42430470(+)	---A-B-BAAAA-
chr17_0083	78	(2, 41) --- (3, 42) --- (4, 29, 43) --- (5, 44) --- (6, 45) --- (7, 46) --- (9, 48) --- (10, 49) --- (12, 51) --- (15, 40, 54, 55) --- (23, 62) --- (24, 63) --- (25, 64) --- (26, 65) --- (27, 66) --- (28, 67) --- (30, 69) --- (33, 72)	(2, 41) --- (3, 42) --- (4, 29, 43) --- (5, 44) --- (6, 45) --- (7, 46) --- (9, 48) --- (10, 49) --- (12, 51) --- (15, 40, 54, 55) --- (23, 62) --- (24, 63) --- (25, 64) --- (26, 65) --- (27, 66) --- (28, 67) --- (30, 69) --- (33, 72)	chr17:67144147-67323323(-)	-ABCDEF-GH-I--J-------KLMNOPCQ--R------JABCDEF-GH-I--JJ------KLMNOP-Q--R------
chr17_0103	29	(7, 28) --- (12, 20) --- (15, 23) --- (17, 21, 25)	(7, 28) --- (12, 20) --- (15, 23) --- (17, 21, 25)	chr17:7218950-7232638(-)	------A----B--C-D--BD-C-D--A-
chr17_0124	22	(13, 21) --- (15, 19)	(13, 21) --- (15, 19)	chr17:74002926-74023507(-)	------------A-B---B-A-
chr17_0126	65	(10, 36) --- (25, 26, 32) --- (38, 44)	(10, 36) --- (25, 26, 32) --- (38, 44)	chr17:18012019-18083115(+)	---------A--------------BB-----B---A-C-----C---------------------
chr17_0129	58	(15, 43) --- (22, 24)	(15, 43) --- (22, 24)	chr17:29421944-29704694(+)	--------------A------B-B------------------A---------------
chr17_0153	85	(2, 60) --- (58, 63)	(2, 60) --- (58, 63)	chr17:7623038-7737058(+)	-A-------------------------------------------------------B-A--B----------------------
chr17_0175	26	(3, 18, 19) --- (6, 15) --- (9, 11)	(3, 18, 19) --- (6, 15) --- (9, 11)	chr17:79163392-79196751(-)	--A--B--C-C---B--AA-------
chr17_0185	61	(22, 43) --- (34, 37, 57)	(22, 43) --- (34, 37, 57)	chr17:73584138-73622925(+)	---------------------A-----------B--B-----A-------------B----
chr17_0191	26	(4, 7, 12) --- (9, 14)	(4, 7, 12) --- (9, 14)	chr17:73521782-73571289(+)	---A--A-B--A-B------------
chr17_0219	13	(3, 10) --- (4, 11) --- (5, 12)	(3, 10) --- (4, 11) --- (5, 12)	chr17:49230919-49249104(+)	--ABC----ABC-
chr17_0229	17	(1, 9, 12, 15, 16) --- (2, 4)	(1, 9, 12, 15, 16) --- (2, 4)	chr17:79981279-79989026(+)	AB-B----A--A--AA-
chr17_0353	21	(2, 8) --- (3, 10) --- (4, 11)	(2, 8) --- (3, 10) --- (4, 11)	chr17:28705983-28795699(+)	-ABC---A-BC----------
chr17_0435	28	(2, 16) --- (3, 17) --- (4, 18) --- (5, 19) --- (6, 20) --- (8, 22) --- (9, 23) --- (10, 24) --- (12, 26) --- (13, 27) --- (14, 28)	(2, 16) --- (3, 17) --- (4, 18) --- (5, 19) --- (6, 20) --- (8, 22) --- (9, 23) --- (10, 24) --- (12, 26) --- (13, 27) --- (14, 28)	chr17:34746119-34808091(-)	-ABCDE-FGH-IJK-ABCDE-FGH-IJK
chr17_0727	19	(3, 15) --- (8, 9)	(3, 15) --- (8, 9)	chr17:6481645-6544247(-)	--A----BB-----A----
chr17_0829	10	(3, 5) --- (4, 6)	(3, 5) --- (4, 6)	chr17:39968961-39979469(+)	--ABAB----

chr18

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr18_0014	20	(8, 14) --- (17, 18)	(8, 14) --- (17, 18)	chr18:5954705-6414910(-)	-------A-----A--BB--
chr18_0036	45	(2, 9, 15, 18, 21, 26, 28, 33, 41, 44) --- (5, 31) --- (6, 20) --- (14, 23)	(2, 9, 15, 18, 21, 26, 28, 33, 41, 44) --- (5, 31) --- (6, 20) --- (14, 23)	chr18:44056936-44236996(-)	-A--BC--A----DA--A-CA-D--A-A--B-A-------A--A-
chr18_0054	31	(6, 10, 19, 30) --- (18, 21)	(6, 10, 19, 30) --- (18, 21)	chr18:74536115-74682680(+)	-----A---A-------BA-B--------A-
chr18_0127	36	(9, 28) --- (10, 12, 16, 24, 31) --- (11, 15, 23, 30) --- (14, 18, 20, 22, 26, 33)	(9, 28) --- (10, 12, 16, 24, 31) --- (11, 15, 23, 30) --- (14, 18, 20, 22, 26, 33)	chr18:14748238-14852737(+)	--------ABCB-DCB-D-D-DCB-D-A-CB-D---
chr18_0172	20	(4, 14) --- (5, 15) --- (6, 16) --- (7, 17) --- (8, 18)	(4, 14) --- (5, 15) --- (6, 16) --- (7, 17) --- (8, 18)	chr18:43194765-43263058(+)	---ABCDE-----ABCDE--

chr19

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr19_0020	13	(2, 3) --- (8, 9, 10)	(2, 3) --- (8, 9, 10)	chr19:54720146-54726959(-)	-AA----BBB---
chr19_0051	43	(8, 18) --- (27, 30, 33, 35, 37) --- (39, 41)	(8, 18) --- (27, 30, 33, 35, 37) --- (39, 41)	chr19:50706884-50813801(+)	-------A---------A--------B--B--B-B-B-C-C--
chr19_0062	38	(2, 7) --- (5, 10)	(2, 7) --- (5, 10)	chr19:5205519-5340814(-)	-A--B-A--B----------------------------
chr19_0066	26	(3, 4) --- (9, 12)	(3, 4) --- (9, 12)	chr19:8645125-8675588(-)	--AA----B--B--------------
chr19_0074	35	(3, 9) --- (11, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 31, 34, 35)	(3, 9) --- (11, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 31, 34, 35)	chr19:41099071-41135725(+)	--A-----A-B----BBBBBBBBBBB----B--BB
chr19_0091	20	(5, 10) --- (12, 13, 14, 15, 16, 17, 18)	(5, 10) --- (12, 13, 14, 15, 16, 17, 18)	chr19:55692615-55720874(-)	----A----A-BBBBBBB--
chr19_0108	20	(10, 17) --- (16, 18)	(10, 17) --- (16, 18)	chr19:7895160-7929861(+)	---------A-----BAB--
chr19_0109	29	(9, 13) --- (10, 11)	(9, 13) --- (10, 11)	chr19:14016955-14041693(+)	--------ABB-A----------------
chr19_0161	12	(4, 9) --- (5, 10) --- (6, 11)	(4, 9) --- (5, 10) --- (6, 11)	chr19:50354415-50363999(+)	---ABC--ABC-
chr19_0176	106	(23, 95) --- (38, 92) --- (62, 71)	(23, 95) --- (38, 92) --- (62, 71)	chr19:38924339-39078203(+)	----------------------A--------------B-----------------------C--------C--------------------B--A-----------
chr19_0183	41	(10, 14) --- (11, 24) --- (18, 27, 32)	(10, 14) --- (11, 24) --- (18, 27, 32)	chr19:42829760-42882920(+)	---------AB--A---C-----B--C----C---------
chr19_0225	8	(3, 6) --- (4, 7)	(3, 6) --- (4, 7)	chr19:57050316-57068169(+)	--AB-AB-
chr19_0264	63	(3, 4, 5, 6, 7, 8, 10, 11, 13, 14, 17, 18, 19, 20, 21, 22, 23, 26, 27, 30, 31, 32, 35, 36, 37, 38, 39, 40, 41, 43, 46, 47, 48, 50, 51, 52, 53) --- (15, 24, 49)	(3, 4, 5, 6, 7, 8, 10, 11, 13, 14, 17, 18, 19, 20, 21, 22, 23, 26, 27, 30, 31, 32, 35, 36, 37, 38, 39, 40, 41, 43, 46, 47, 48, 50, 51, 52, 53) --- (15, 24, 49)	chr19:8130287-8212385(-)	--AAAAAA-AA-AAB-AAAAAAAB-AA--AAA--AAAAAAA-A--AAABAAAA----------
chr19_0281	36	(4, 6, 8, 12, 14, 16, 20, 22, 24, 28, 30, 32, 36) --- (7, 15, 23) --- (9, 13, 17, 21, 25, 29, 31) --- (10, 18, 26) --- (11, 19, 27)	(4, 6, 8, 12, 14, 16, 20, 22, 24, 28, 30, 32, 36) --- (7, 15, 23) --- (9, 13, 17, 21, 25, 29, 31) --- (10, 18, 26) --- (11, 19, 27)	chr19:40353963-40440533(-)	---A-ABACDEACABACDEACABACDEACACA---A
chr19_0286	18	(10, 12) --- (13, 14)	(10, 12) --- (13, 14)	chr19:50321545-50340237(+)	---------A-ABB----
chr19_0328	47	(7, 47) --- (22, 40)	(7, 47) --- (22, 40)	chr19:1040101-1065568(+)	------A--------------B-----------------B------A
chr19_0392	48	(25, 30) --- (26, 29) --- (31, 32)	(25, 30) --- (26, 29) --- (31, 32)	chr19:11309972-11373157(-)	------------------------AB--BACC----------------
chr19_0417	84	(10, 15, 19, 22, 24, 27, 29, 32, 34, 37, 39, 42, 44, 47, 49, 52, 54, 57, 59, 62, 64, 67, 69, 72, 74, 77) --- (11, 16, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75) --- (12, 17, 21, 26, 31, 36, 41, 46, 51, 56, 61, 66, 71, 76)	(10, 15, 19, 22, 24, 27, 29, 32, 34, 37, 39, 42, 44, 47, 49, 52, 54, 57, 59, 62, 64, 67, 69, 72, 74, 77) --- (11, 16, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75) --- (12, 17, 21, 26, 31, 36, 41, 46, 51, 56, 61, 66, 71, 76)	chr19:8959520-9092018(-)	---------ABC--ABC-ABCA-ABCA-ABCA-ABCA-ABCA-ABCA-ABCA-ABCA-ABCA-ABCA-ABCA-ABCA-------
chr19_0535	10	(3, 5, 7) --- (4, 6, 8)	(3, 5, 7) --- (4, 6, 8)	chr19:42212529-42234436(+)	--ABABAB--
chr19_0544	21	(3, 4) --- (6, 8, 11)	(3, 4) --- (6, 8, 11)	chr19:1609292-1652326(-)	--AA-B-B--B----------
chr19_0588	9	(2, 5) --- (3, 6)	(2, 5) --- (3, 6)	chr19:14042001-14064204(-)	-AB-AB---
chr19_0593	29	(1, 23) --- (7, 21) --- (16, 27)	(1, 23) --- (7, 21) --- (16, 27)	chr19:1782075-1812270(-)	A-----B--------C----B-A---C--
chr19_0630	13	(6, 8, 11) --- (7, 9)	(6, 8, 11) --- (7, 9)	chr19:10426890-10444314(-)	-----ABAB-A--
chr19_0740	11	(6, 9) --- (7, 10) --- (8, 11)	(6, 9) --- (7, 10) --- (8, 11)	chr19:53115619-53193886(-)	-----ABCABC
chr19_0753	16	(3, 5) --- (4, 11)	(3, 5) --- (4, 11)	chr19:43979255-44008985(-)	--ABA-----B-----
chr19_0765	6	(2, 4) --- (3, 5)	(2, 4) --- (3, 5)	chr19:57663093-57678856(-)	-ABAB-
chr19_0772	27	(7, 19) --- (13, 14)	(7, 19) --- (13, 14)	chr19:50887592-50921270(+)	------A-----BB----A--------
chr19_0794	15	(8, 10) --- (9, 11)	(8, 10) --- (9, 11)	chr19:47567448-47617009(-)	-------ABAB----
chr19_0862	17	(6, 10, 14) --- (7, 15) --- (8, 12, 16) --- (9, 13, 17)	(6, 10, 14) --- (7, 15) --- (8, 12, 16) --- (9, 13, 17)	chr19:2389783-2426085(+)	-----ABCDA-CDABCD
chr19_0883	14	(7, 9) --- (8, 10)	(7, 9) --- (8, 10)	chr19:19387322-19431307(-)	------ABAB----
chr19_1141	10	(3, 6) --- (4, 7)	(3, 6) --- (4, 7)	chr19:9577030-9609279(-)	--AB-AB---

chr2

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr2_0002	183	(5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 27, 29, 30, 31, 32, 33, 37, 38, 39, 45, 46, 48, 49, 50, 52, 53, 57, 58, 61, 62, 63, 64, 67, 69, 70, 71, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 163, 164, 165, 166, 167, 168, 170, 171, 173, 174, 176, 178) --- (26, 34, 41) --- (44, 162, 169)	(5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 27, 29, 30, 31, 32, 33, 37, 38, 39, 45, 46, 48, 49, 50, 52, 53, 57, 58, 61, 62, 63, 64, 67, 69, 70, 71, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 163, 164, 165, 166, 167, 168, 170, 171, 173, 174, 176, 178) --- (26, 34, 41) --- (44, 162, 169)	chr2:152341854-152591001(-)	----A-AAAAAAAAAAAAAA-AAAABA-AAAAAB--AAA-B--CAA-AAA-AA---AA--AAAA--A-AAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAACAA-AA-A-A-----
chr2_0008	44	(7, 18, 22) --- (14, 17, 23, 28) --- (24, 29) --- (25, 39, 42)	(7, 18, 22) --- (14, 17, 23, 28) --- (24, 29) --- (25, 39, 42)	chr2:238232654-238322850(-)	------A------B--BA---ABCD--BC---------D--D--
chr2_0009	29	(14, 25) --- (22, 23)	(14, 25) --- (22, 23)	chr2:165944031-166060577(-)	-------------A-------BB-A----
chr2_0014	18	(3, 11) --- (4, 12) --- (5, 13) --- (6, 14) --- (7, 15) --- (8, 16)	(3, 11) --- (4, 12) --- (5, 13) --- (6, 14) --- (7, 15) --- (8, 16)	chr2:75059781-75120474(+)	--ABCDEF--ABCDEF--
chr2_0039	316	(6, 7, 8, 11, 13, 14, 15, 17, 19, 22, 23, 24, 25, 26, 28, 29, 30, 31, 32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 46, 47, 49, 50, 52, 53, 54, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 68, 72, 73, 74, 76, 77, 81, 82, 86, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 100, 101, 102, 105, 107, 109, 110, 111, 117, 129, 143, 144, 145, 146, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 204, 206, 218, 220, 222, 224, 226, 227, 228, 230, 232, 234, 236, 237, 238, 240, 242, 244, 246, 247, 250, 252, 253, 254, 256, 258, 259, 260, 262, 264, 265, 268, 269, 270, 278, 280, 298, 300, 304, 305, 306, 307, 308, 312) --- (18, 78) --- (115, 134, 284) --- (120, 122, 137) --- (125, 130, 135) --- (126, 131) --- (127, 132) --- (128, 133) --- (219, 229, 239) --- (221, 231, 241) --- (223, 233, 243, 249, 255, 261) --- (225, 235, 245, 251, 257, 263)	(6, 7, 8, 11, 13, 14, 15, 17, 19, 22, 23, 24, 25, 26, 28, 29, 30, 31, 32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 46, 47, 49, 50, 52, 53, 54, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 68, 72, 73, 74, 76, 77, 81, 82, 86, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 100, 101, 102, 105, 107, 109, 110, 111, 117, 129, 143, 144, 145, 146, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 204, 206, 218, 220, 222, 224, 226, 227, 228, 230, 232, 234, 236, 237, 238, 240, 242, 244, 246, 247, 250, 252, 253, 254, 256, 258, 259, 260, 262, 264, 265, 268, 269, 270, 278, 280, 298, 300, 304, 305, 306, 307, 308, 312) --- (18, 78) --- (115, 134, 284) --- (120, 122, 137) --- (125, 130, 135) --- (126, 131) --- (127, 132) --- (128, 133) --- (219, 229, 239) --- (221, 231, 241) --- (223, 233, 243, 249, 255, 261) --- (225, 235, 245, 251, 257, 263)	chr2:179390719-179672150(-)	-----AAA--A-AAA-ABA--AAAAA-AAAAA-AAAAAAAAAAA-AA-AA-AAA--AAAAAAAAAA-A---AAA-AAB--AA---A-AAAAAAAAAAA-AAA--A-A-AAA---C-A--D-D--EFGHAEFGHCE-D-----AAAA-AAAAAAAAAAAAAAA-AAAAAAAAAAAAAAAAAAAAAAAAAA-AAAAAAAAAAA--A-A-----------AIAJAKALAAAIAJAKALAAAIAJAKALAA-KALAAAKALAAAKALAA--AAA-------A-A---C-------------A-A---AAAAA---A----
chr2_0047	48	(1, 2) --- (3, 14) --- (8, 48) --- (25, 27)	(1, 2) --- (3, 14) --- (8, 48) --- (25, 27)	chr2:26680071-26781566(-)	AAB----C-----B----------D-D--------------------C
chr2_0060	76	(8, 10, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64, 66) --- (12, 15) --- (13, 16) --- (17, 72) --- (20, 22)	(8, 10, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64, 66) --- (12, 15) --- (13, 16) --- (17, 72) --- (20, 22)	chr2:97779232-97930255(+)	-------A-A-BC-BCD--E-E-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-----D----
chr2_0112	18	(2, 18) --- (7, 8)	(2, 18) --- (7, 8)	chr2:37477647-37544222(-)	-A----BB---------A
chr2_0121	47	(7, 20, 31) --- (9, 15, 21) --- (38, 44)	(7, 20, 31) --- (9, 15, 21) --- (38, 44)	chr2:216225180-216300791(-)	------A-B-----B----AB---------A------C-----C---
chr2_0127	28	(3, 15) --- (4, 16)	(3, 15) --- (4, 16)	chr2:169779448-169887833(-)	--AB----------AB------------
chr2_0179	28	(9, 22, 23) --- (12, 25)	(9, 22, 23) --- (12, 25)	chr2:71558888-71662187(+)	--------A--B---------AA-B---
chr2_0180	91	(18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 37, 38, 41, 44, 71, 72, 75, 76, 90) --- (20, 39) --- (51, 77) --- (55, 62, 67, 80) --- (61, 65)	(18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 37, 38, 41, 44, 71, 72, 75, 76, 90) --- (20, 39) --- (51, 77) --- (55, 62, 67, 80) --- (61, 65)	chr2:140988995-142889270(-)	-----------------AABAAAAAAAAA-------AAB-A--A------C---D-----ED--E-D---AA--AAC--D---------A-
chr2_0191	30	(10, 13) --- (12, 17, 19)	(10, 13) --- (12, 17, 19)	chr2:231280870-231410317(+)	---------A-BA---B-B-----------
chr2_0234	24	(3, 11) --- (7, 8)	(3, 11) --- (7, 8)	chr2:95940200-95957053(+)	--A---BB--A-------------
chr2_0263	38	(3, 11) --- (5, 34)	(3, 11) --- (5, 34)	chr2:44113362-44223144(-)	--A-B-----A----------------------B----
chr2_0297	33	(19, 20) --- (25, 27)	(19, 20) --- (25, 27)	chr2:55514977-55647057(-)	------------------AA----B-B------
chr2_0346	12	(1, 3) --- (7, 9)	(1, 3) --- (7, 9)	chr2:228844669-229046361(-)	A-A---B-B---
chr2_0350	79	(17, 20, 21, 22, 23, 24, 31, 33, 56, 57, 73, 74, 76, 78) --- (28, 51, 62)	(17, 20, 21, 22, 23, 24, 31, 33, 56, 57, 73, 74, 76, 78) --- (28, 51, 62)	chr2:169983619-170219122(-)	----------------A--AAAAA---B--A-A-----------------B----AA----B----------AA-A-A-
chr2_0353	29	(3, 12) --- (10, 15)	(3, 12) --- (10, 15)	chr2:242166678-242255254(-)	--A------B-A--B--------------
chr2_0389	58	(15, 43) --- (18, 32, 46) --- (19, 33) --- (21, 35) --- (23, 37, 51) --- (28, 42, 56)	(15, 43) --- (18, 32, 46) --- (19, 33) --- (21, 35) --- (23, 37, 51) --- (28, 42, 56)	chr2:28718937-28866651(+)	--------------A--BC-D-E----F---BC-D-E----FA--B----E----F--
chr2_0442	48	(4, 7, 8, 9, 10, 11, 12, 14, 15, 16, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 32, 34, 35, 39, 42) --- (17, 44)	(4, 7, 8, 9, 10, 11, 12, 14, 15, 16, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 32, 34, 35, 39, 42) --- (17, 44)	chr2:227867434-228029275(-)	---A--AAAAAA-AAAB-AAAA-AAAAAAA-A-AA---A--A-B----
chr2_0466	28	(6, 11, 13) --- (7, 10, 12)	(6, 11, 13) --- (7, 10, 12)	chr2:231090444-231177931(+)	-----AB--BABA---------------
chr2_0552	21	(10, 11) --- (13, 14, 15, 16)	(10, 11) --- (13, 14, 15, 16)	chr2:220415465-220436011(-)	---------AA-BBBB-----
chr2_0558	15	(6, 10) --- (7, 11) --- (9, 13)	(6, 10) --- (7, 11) --- (9, 13)	chr2:131975923-132022416(+)	-----AB-CAB-C--
chr2_0578	17	(5, 11, 12) --- (8, 9)	(5, 11, 12) --- (8, 9)	chr2:119699744-119752236(+)	----A--BB-AA-----
chr2_0622	41	(4, 17) --- (9, 23) --- (11, 40)	(4, 17) --- (9, 23) --- (11, 40)	chr2:54952148-55199154(+)	---A----B-C-----A-----B----------------C-
chr2_0659	23	(2, 4) --- (7, 9) --- (14, 19)	(2, 4) --- (7, 9) --- (14, 19)	chr2:220154346-220174143(-)	-A-A--B-B----C----C----
chr2_0724	17	(3, 7) --- (5, 9) --- (6, 10)	(3, 7) --- (5, 9) --- (6, 10)	chr2:130831107-130886795(-)	--A-BCA-BC-------
chr2_0768	17	(4, 11) --- (7, 8, 10, 12)	(4, 11) --- (7, 8, 10, 12)	chr2:136545414-136594750(-)	---A--BB-BAB-----
chr2_0845	20	(9, 13) --- (10, 12) --- (15, 16)	(9, 13) --- (10, 12) --- (15, 16)	chr2:231033644-231084827(-)	--------AB-BA-CC----
chr2_0923	17	(2, 3) --- (5, 9, 11)	(2, 3) --- (5, 9, 11)	chr2:89065418-89106107(+)	-AA-B---B-B------

chr20

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr20_0038	36	(16, 30) --- (25, 31)	(16, 30) --- (25, 31)	chr20:34043149-34099802(+)	---------------A--------B----AB-----
chr20_0039	26	(6, 11, 15, 18) --- (7, 19) --- (12, 17, 20)	(6, 11, 15, 18) --- (7, 19) --- (12, 17, 20)	chr20:10618331-10654694(-)	-----AB---AC--A-CABC------
chr20_0043	11	(2, 7) --- (3, 8) --- (4, 9) --- (5, 10)	(2, 7) --- (3, 8) --- (4, 9) --- (5, 10)	chr20:1545029-1600689(-)	-ABCD-ABCD-
chr20_0056	19	(7, 13) --- (9, 12)	(7, 13) --- (9, 12)	chr20:42143052-42170534(+)	------A-B--BA------
chr20_0086	80	(3, 43) --- (7, 64) --- (25, 46, 62, 63) --- (34, 36, 37, 40, 54, 60, 65, 66, 67, 68, 69, 71)	(3, 43) --- (7, 64) --- (25, 46, 62, 63) --- (34, 36, 37, 40, 54, 60, 65, 66, 67, 68, 69, 71)	chr20:60884122-60942368(-)	--A---B-----------------C--------D-DD--D--A--C-------D-----D-CCBDDDDD-D---------
chr20_0092	10	(2, 6) --- (3, 7) --- (4, 8)	(2, 6) --- (3, 7) --- (4, 8)	chr20:50700550-50808524(-)	-ABC-ABC--
chr20_0205	24	(9, 11) --- (12, 19)	(9, 11) --- (12, 19)	chr20:25433337-25566153(-)	--------A-AB------B-----
chr20_0253	43	(26, 40) --- (28, 29, 30, 34, 38, 39, 41) --- (33, 36)	(26, 40) --- (28, 29, 30, 34, 38, 39, 41) --- (33, 36)	chr20:33563205-33590236(+)	-------------------------A-BBB--CB-C-BBAB--
chr20_0258	12	(5, 10) --- (6, 11)	(5, 10) --- (6, 11)	chr20:34108571-34117481(-)	----AB---AB-
chr20_0321	21	(4, 8, 10, 12, 14, 16) --- (7, 9)	(4, 8, 10, 12, 14, 16) --- (7, 9)	chr20:3667618-3687775(-)	---A--BABA-A-A-A-----
chr20_0333	28	(2, 17) --- (15, 19)	(2, 17) --- (15, 19)	chr20:44577292-44600833(-)	-A------------B-A-B---------
chr20_0455	11	(6, 9) --- (7, 10)	(6, 9) --- (7, 10)	chr20:60718821-60757568(+)	-----AB-AB-

chr21

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr21_0007	47	(7, 25) --- (17, 27, 34, 42)	(7, 25) --- (17, 27, 34, 42)	chr21:38445570-38575406(+)	------A---------B-------A-B------B-------B-----
chr21_0013	31	(5, 8) --- (11, 13)	(5, 8) --- (11, 13)	chr21:43221324-43299582(-)	----A--A--B-B------------------
chr21_0022	35	(2, 35) --- (9, 16, 17, 19, 20, 25, 32)	(2, 35) --- (9, 16, 17, 19, 20, 25, 32)	chr21:47401662-47424963(+)	-A------B------BB-BB----B------B--A
chr21_0038	44	(1, 4) --- (9, 17, 26, 29, 31, 33, 41)	(1, 4) --- (9, 17, 26, 29, 31, 33, 41)	chr21:46825096-46933633(+)	A--A----B-------B--------B--B-B-B-------B---
chr21_0040	29	(6, 14, 21) --- (13, 16, 17, 22) --- (15, 18)	(6, 14, 21) --- (13, 16, 17, 22) --- (15, 18)	chr21:47518032-47552763(+)	-----A------BACBBC--AB-------
chr21_0117	25	(2, 12) --- (5, 16)	(2, 12) --- (5, 16)	chr21:45719929-45747255(+)	-A--B------A---B---------

chr22

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr22_0031	41	(3, 8, 9, 11, 17, 19) --- (12, 14, 21)	(3, 8, 9, 11, 17, 19) --- (12, 14, 21)	chr22:36677323-36784063(-)	--A----AA-AB-B--A-A-B--------------------
chr22_0034	37	(1, 15) --- (2, 4, 5)	(1, 15) --- (2, 4, 5)	chr22:18270417-18507325(-)	AB-BB---------A----------------------
chr22_0041	7	(2, 5) --- (3, 6)	(2, 5) --- (3, 6)	chr22:39417117-39429255(+)	-AB-AB-
chr22_0043	26	(3, 20) --- (10, 25)	(3, 20) --- (10, 25)	chr22:25202135-25322813(+)	--A------B---------A----B-
chr22_0075	13	(1, 2) --- (11, 13)	(1, 2) --- (11, 13)	chr22:21369441-21382302(+)	AA--------B-B
chr22_0107	12	(6, 8) --- (11, 12)	(6, 8) --- (11, 12)	chr22:30752626-30772816(+)	-----A-A--BB
chr22_0153	15	(7, 10) --- (8, 11)	(7, 10) --- (8, 11)	chr22:29601952-29655585(+)	------AB-AB----

chr3

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr3_0018	34	(3, 33) --- (4, 17)	(3, 33) --- (4, 17)	chr3:123331144-123603149(-)	--AB------------B---------------A-
chr3_0020	36	(4, 12) --- (13, 22, 23) --- (16, 27) --- (21, 32)	(4, 12) --- (13, 22, 23) --- (16, 27) --- (21, 32)	chr3:130279177-130395887(+)	---A-------AB--C----DBB---C----D----
chr3_0022	42	(12, 14, 22) --- (17, 23) --- (35, 38)	(12, 14, 22) --- (17, 23) --- (35, 38)	chr3:130064358-130203688(+)	-----------A-A--B----AB-----------C--C----
chr3_0028	48	(8, 31) --- (9, 32) --- (13, 35) --- (14, 36) --- (17, 38) --- (22, 43)	(8, 31) --- (9, 32) --- (13, 35) --- (14, 36) --- (17, 38) --- (22, 43)	chr3:164696686-164796282(-)	-------AB---CD--E----F--------AB--CD-E----F-----
chr3_0051	29	(13, 21) --- (23, 24)	(13, 21) --- (23, 24)	chr3:38589553-38691163(-)	------------A-------A-BB-----
chr3_0097	69	(4, 6, 23, 24, 38, 39, 42, 44, 56, 59) --- (7, 43) --- (25, 36) --- (54, 57)	(4, 6, 23, 24, 38, 39, 42, 44, 56, 59) --- (7, 43) --- (25, 36) --- (54, 57)	chr3:52529355-52558509(+)	---A-AB---------------AAC----------C-AA--ABA---------D-AD-A----------
chr3_0125	35	(16, 17, 18, 20, 21) --- (22, 31) --- (30, 34)	(16, 17, 18, 20, 21) --- (22, 31) --- (30, 34)	chr3:100468180-100712334(-)	---------------AAA-AAB-------CB--C-
chr3_0208	30	(16, 24) --- (20, 27)	(16, 24) --- (20, 27)	chr3:52579367-52719866(-)	---------------A---B---A--B---
chr3_0224	17	(4, 12) --- (5, 13) --- (6, 14) --- (8, 16)	(4, 12) --- (5, 13) --- (6, 14) --- (8, 16)	chr3:196730156-196756686(-)	---ABC-D---ABC-D-
chr3_0232	56	(16, 53) --- (25, 28, 32)	(16, 53) --- (25, 28, 32)	chr3:132136552-132257875(+)	---------------A--------B--B---B--------------------A---
chr3_0243	47	(7, 17, 28) --- (21, 24, 35, 38, 41)	(7, 17, 28) --- (21, 24, 35, 38, 41)	chr3:57994126-58157982(+)	------A---------A---B--B---A------B--B--B------
chr3_0313	28	(2, 21, 25) --- (19, 20)	(2, 21, 25) --- (19, 20)	chr3:15708743-15901053(-)	-A----------------BBA---A---
chr3_0334	23	(5, 11) --- (19, 21)	(5, 11) --- (19, 21)	chr3:184097860-184107619(+)	----A-----A-------B-B--
chr3_0418	23	(4, 17) --- (6, 9)	(4, 17) --- (6, 9)	chr3:122628042-122746576(-)	---A-B--B-------A------
chr3_0479	19	(3, 15) --- (10, 16)	(3, 15) --- (10, 16)	chr3:148890291-148939832(-)	--A------B----AB---
chr3_0562	18	(8, 12) --- (9, 11, 13)	(8, 12) --- (9, 11, 13)	chr3:49721380-49726196(-)	-------AB-BAB-----
chr3_0564	50	(8, 9) --- (18, 27)	(8, 9) --- (18, 27)	chr3:53529030-53846491(+)	-------AA--------B--------B-----------------------
chr3_0621	17	(3, 10) --- (4, 12) --- (6, 14)	(3, 10) --- (4, 12) --- (6, 14)	chr3:133464976-133497849(+)	--AB-C---A-B-C---

chr4

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr4_0055	37	(4, 19, 29) --- (6, 10, 11)	(4, 19, 29) --- (6, 10, 11)	chr4:109734971-110223799(-)	---A-B---BB-------A---------A--------
chr4_0104	34	(13, 28, 29) --- (23, 25, 26)	(13, 28, 29) --- (23, 25, 26)	chr4:73940502-74124502(-)	------------A---------B-BB-AA-----
chr4_0179	49	(11, 12, 14, 17, 18, 20, 21, 23, 27, 47) --- (13, 15, 16, 19, 22, 26, 32)	(11, 12, 14, 17, 18, 20, 21, 23, 27, 47) --- (13, 15, 16, 19, 22, 26, 32)	chr4:104026962-104119566(-)	----------AABABBAABAABA--BA----B--------------A--
chr4_0214	26	(3, 21) --- (17, 20)	(3, 21) --- (17, 20)	chr4:13570365-13629328(-)	--A-------------B--BA-----
chr4_0300	16	(4, 5) --- (7, 9)	(4, 5) --- (7, 9)	chr4:1723265-1746895(+)	---AA-B-B-------

chr5

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr5_0014	34	(5, 6) --- (15, 21, 31) --- (19, 24, 29) --- (23, 28)	(5, 6) --- (15, 21, 31) --- (19, 24, 29) --- (23, 28)	chr5:95997940-96110383(+)	----AA--------B---C-B-DC---DC-B---
chr5_0051	39	(6, 7) --- (8, 20) --- (9, 10) --- (18, 21)	(6, 7) --- (8, 20) --- (9, 10) --- (18, 21)	chr5:139781428-139929163(+)	-----AABCC-------D-BD------------------
chr5_0105	34	(3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 25, 27, 30) --- (12, 14, 20, 22, 26)	(3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 25, 27, 30) --- (12, 14, 20, 22, 26)	chr5:147443534-147516925(+)	--A-A-A-A-ABABA-A-ABABA-ABA--A----
chr5_0111	17	(4, 5) --- (14, 15)	(4, 5) --- (14, 15)	chr5:152870083-153193428(+)	---AA--------BB--
chr5_0142	39	(4, 38) --- (8, 21) --- (14, 19)	(4, 38) --- (8, 21) --- (14, 19)	chr5:70751441-70863649(+)	---A---B-----C----C-B----------------A-
chr5_0171	26	(4, 17) --- (10, 22) --- (11, 23)	(4, 17) --- (10, 22) --- (11, 23)	chr5:150480267-150537367(-)	---A-----BC-----A----BC---
chr5_0247	29	(2, 11) --- (4, 13) --- (17, 23)	(2, 11) --- (4, 13) --- (17, 23)	chr5:137475458-137514358(-)	-A-B------A-B---C-----C------
chr5_0251	36	(6, 16, 20, 23, 27, 32, 34) --- (15, 30) --- (24, 25)	(6, 16, 20, 23, 27, 32, 34) --- (15, 30) --- (24, 25)	chr5:168093071-168728133(-)	-----A--------BA---A--ACC-A--B-A-A--
chr5_0295	20	(1, 8) --- (16, 17)	(1, 8) --- (16, 17)	chr5:141018869-141030986(-)	A------A-------BB---
chr5_0345	43	(9, 10) --- (12, 29)	(9, 10) --- (12, 29)	chr5:94800122-94890682(-)	--------AA-B----------------B--------------
chr5_0353	25	(1, 2, 3, 5, 7, 9, 10, 12, 14, 16, 18, 19) --- (4, 6, 8, 11, 13)	(1, 2, 3, 5, 7, 9, 10, 12, 14, 16, 18, 19) --- (4, 6, 8, 11, 13)	chr5:140710251-140892546(+)	AAABABABAABABA-A-AA------
chr5_0439	19	(4, 12) --- (5, 13) --- (6, 14) --- (7, 15)	(4, 12) --- (5, 13) --- (6, 14) --- (7, 15)	chr5:176307870-176326333(-)	---ABCD----ABCD----
chr5_0460	27	(3, 6) --- (7, 27)	(3, 6) --- (7, 27)	chr5:54603575-54721408(+)	--A--AB-------------------B
chr5_0509	26	(7, 8, 14) --- (19, 20)	(7, 8, 14) --- (19, 20)	chr5:126626455-126796908(+)	------AA-----A----BB------

chr6

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr6_0002	149	(71, 132) --- (136, 146)	(71, 132) --- (136, 146)	chr6:152442822-152958534(-)	----------------------------------------------------------------------A------------------------------------------------------------A---B---------B---
chr6_0042	103	(18, 39) --- (43, 71) --- (48, 52) --- (84, 97)	(18, 39) --- (43, 71) --- (48, 52) --- (84, 97)	chr6:56322786-56819413(-)	-----------------A--------------------A---B----C---C------------------B------------D------------D------
chr6_0056	8	(2, 6) --- (3, 7)	(2, 6) --- (3, 7)	chr6:43273210-43276530(-)	-AB--AB-
chr6_0104	29	(2, 28) --- (17, 24)	(2, 28) --- (17, 24)	chr6:86215216-86303629(-)	-A--------------B------B---A-
chr6_0158	58	(19, 24) --- (35, 38)	(19, 24) --- (35, 38)	chr6:33589160-33664346(+)	------------------A----A----------B--B--------------------
chr6_0200	51	(8, 9, 12, 13, 15, 19, 22, 23, 24, 27, 29, 33, 35, 36, 41, 44, 47, 50) --- (16, 25, 30, 49)	(8, 9, 12, 13, 15, 19, 22, 23, 24, 27, 29, 33, 35, 36, 41, 44, 47, 50) --- (16, 25, 30, 49)	chr6:70576447-70922157(+)	-------AA--AA-AB--A--AAAB-A-AB--A-AA----A--A--A-BA-
chr6_0201	11	(2, 4, 6, 8, 9) --- (3, 5, 7, 10)	(2, 4, 6, 8, 9) --- (3, 5, 7, 10)	chr6:160887586-160932156(-)	-ABABABAAB-
chr6_0220	45	(21, 27, 28) --- (23, 34) --- (26, 29) --- (31, 32)	(21, 27, 28) --- (23, 34) --- (26, 29) --- (31, 32)	chr6:64429875-66417118(-)	--------------------A-B--CAAC-DD-B-----------
chr6_0226	66	(2, 3, 4, 7, 9, 10) --- (22, 48, 57, 61) --- (29, 33, 35)	(2, 3, 4, 7, 9, 10) --- (22, 48, 57, 61) --- (29, 33, 35)	chr6:75794042-75915623(-)	-AAA--A-AA-----------B------C---C-C------------B--------B---B-----
chr6_0228	40	(2, 40) --- (9, 11, 13, 15, 17, 19, 21, 23, 25, 27, 29, 31, 33, 35, 37) --- (10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38)	(2, 40) --- (9, 11, 13, 15, 17, 19, 21, 23, 25, 27, 29, 31, 33, 35, 37) --- (10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38)	chr6:160952515-161087407(-)	-A------BCBCBCBCBCBCBCBCBCBCBCBCBCBCBC-A
chr6_0285	41	(14, 22) --- (16, 26) --- (19, 38)	(14, 22) --- (16, 26) --- (19, 38)	chr6:109814058-110012415(-)	-------------A-B--C--A---B-----------C---
chr6_0291	30	(3, 15) --- (24, 25)	(3, 15) --- (24, 25)	chr6:135605111-135818903(-)	--A-----------A--------BB-----
chr6_0305	38	(19, 31) --- (27, 34)	(19, 31) --- (27, 34)	chr6:72596649-73112845(+)	------------------A-------B---A--B----
chr6_0496	12	(3, 6, 9) --- (5, 8)	(3, 6, 9) --- (5, 8)	chr6:36283536-36304662(-)	--A-BA-BA---

chr7

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr7_0016	28	(2, 15) --- (3, 16) --- (4, 17)	(2, 15) --- (3, 16) --- (4, 17)	chr7:87031360-87105019(-)	-ABC----------ABC-----------
chr7_0037	35	(3, 31) --- (7, 12, 15, 19, 23) --- (8, 11, 16, 17, 18, 20, 21, 22, 24, 25)	(3, 31) --- (7, 12, 15, 19, 23) --- (8, 11, 16, 17, 18, 20, 21, 22, 24, 25)	chr7:7398243-7575460(-)	--A---BC--CB--BCCCBCCCBCC-----A----
chr7_0043	24	(2, 12) --- (5, 6, 7)	(2, 12) --- (5, 6, 7)	chr7:44256748-44365230(-)	-A--BBB----A------------
chr7_0059	10	(4, 6) --- (5, 7)	(4, 6) --- (5, 7)	chr7:32997004-33046542(+)	---ABAB---
chr7_0075	46	(18, 26, 36) --- (28, 38)	(18, 26, 36) --- (28, 38)	chr7:3341079-4308629(+)	-----------------A-------A-B-------A-B--------
chr7_0102	33	(16, 18, 20, 23, 25, 27, 29, 31) --- (17, 19, 22)	(16, 18, 20, 23, 25, 27, 29, 31) --- (17, 19, 22)	chr7:73442426-73484234(+)	---------------ABABA-BA-A-A-A-A--
chr7_0104	29	(1, 14) --- (2, 15) --- (3, 16) --- (4, 17)	(1, 14) --- (2, 15) --- (3, 16) --- (4, 17)	chr7:87132947-87342564(-)	ABCD---------ABCD------------
chr7_0111	35	(14, 17, 20, 25) --- (15, 18, 21, 26)	(14, 17, 20, 25) --- (15, 18, 21, 26)	chr7:74072029-74175020(+)	-------------AB-AB-AB---AB---------
chr7_0119	48	(17, 25) --- (18, 32) --- (20, 34) --- (23, 30, 36, 43)	(17, 25) --- (18, 32) --- (20, 34) --- (23, 30, 36, 43)	chr7:100331248-100395418(+)	----------------AB-C--D-A----D-B-C-D------D-----
chr7_0154	30	(2, 13, 24) --- (14, 29)	(2, 13, 24) --- (14, 29)	chr7:20655244-20796636(+)	-A----------AB---------A----B-
chr7_0172	103	(5, 30, 32, 33, 49, 50, 55, 56, 59, 64, 65, 74, 78, 79, 80, 81, 85, 87, 90, 91, 93, 94, 95) --- (8, 15, 63, 98) --- (11, 99) --- (16, 61) --- (19, 35, 38) --- (25, 29, 66) --- (43, 48) --- (45, 82) --- (52, 57) --- (86, 100)	(5, 30, 32, 33, 49, 50, 55, 56, 59, 64, 65, 74, 78, 79, 80, 81, 85, 87, 90, 91, 93, 94, 95) --- (8, 15, 63, 98) --- (11, 99) --- (16, 61) --- (19, 35, 38) --- (25, 29, 66) --- (43, 48) --- (45, 82) --- (52, 57) --- (86, 100)	chr7:149473130-149531051(+)	----A--B--C---BD--E-----F---FA-AA-E--E----G-H--GAA-I--AAI-A-D-BAAF-------A---AAAAH--AJA--AA-AAA--BCJ---
chr7_0187	25	(10, 15, 18, 21) --- (11, 16, 19, 22)	(10, 15, 18, 21) --- (11, 16, 19, 22)	chr7:74601105-74653459(-)	---------AB---AB-AB-AB---
chr7_0217	25	(4, 7, 10, 15) --- (5, 8, 11, 16)	(4, 7, 10, 15) --- (5, 8, 11, 16)	chr7:72569011-72621334(+)	---AB-AB-AB---AB---------
chr7_0282	39	(1, 10, 12, 13, 14, 15, 16, 17, 18, 20, 22, 24, 26, 29, 30, 32, 35, 36) --- (5, 37) --- (7, 8, 23) --- (11, 27, 33)	(1, 10, 12, 13, 14, 15, 16, 17, 18, 20, 22, 24, 26, 29, 30, 32, 35, 36) --- (5, 37) --- (7, 8, 23) --- (11, 27, 33)	chr7:128516920-128550773(-)	A---B-CC-ADAAAAAAA-A-ACA-AD-AA-AD-AAB--
chr7_0300	17	(3, 4) --- (6, 7)	(3, 4) --- (6, 7)	chr7:73703804-73820272(+)	--AA-BB----------
chr7_0408	16	(2, 5) --- (3, 8)	(2, 5) --- (3, 8)	chr7:98870923-98895592(+)	-AB-A--B--------
chr7_0411	48	(8, 29) --- (9, 30) --- (15, 37) --- (18, 41) --- (20, 43)	(8, 29) --- (9, 30) --- (15, 37) --- (18, 41) --- (20, 43)	chr7:141695678-141806546(+)	-------AB-----C--D-E--------AB------C---D-E-----
chr7_0499	11	(4, 8) --- (5, 9)	(4, 8) --- (5, 9)	chr7:66274979-66309813(-)	---AB--AB--
chr7_0540	48	(16, 18) --- (30, 42)	(16, 18) --- (30, 42)	chr7:1509912-1544018(-)	---------------A-A-----------B-----------B------

chr8

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr8_0002	73	(16, 18) --- (25, 29, 41) --- (28, 36, 46, 49, 52, 70) --- (32, 68)	(16, 18) --- (25, 29, 41) --- (28, 36, 46, 49, 52, 70) --- (32, 68)	chr8:113235160-114449242(-)	---------------A-A------B--CB--D---C----B----C--C--C---------------D-C---
chr8_0015	30	(5, 16) --- (11, 22)	(5, 16) --- (11, 22)	chr8:142443928-142517330(-)	----A-----B----A-----B--------
chr8_0017	48	(7, 27) --- (37, 42) --- (38, 39, 40, 41, 47)	(7, 27) --- (37, 42) --- (38, 39, 40, 41, 47)	chr8:121137351-121384266(+)	------A-------------------A---------BCCCCB----C-
chr8_0030	48	(3, 4, 8) --- (7, 35) --- (13, 34)	(3, 4, 8) --- (7, 35) --- (13, 34)	chr8:133879204-134147141(+)	--AA--BA----C--------------------CB-------------
chr8_0060	46	(26, 32) --- (27, 28, 29, 30, 33, 34, 35, 36, 37, 38, 39, 42) --- (31, 41)	(26, 32) --- (27, 28, 29, 30, 33, 34, 35, 36, 37, 38, 39, 42) --- (31, 41)	chr8:41510744-41754280(-)	-------------------------ABBBBCABBBBBBB-CB----
chr8_0061	37	(8, 10, 11, 19) --- (18, 20) --- (28, 29, 32, 34) --- (30, 33)	(8, 10, 11, 19) --- (18, 20) --- (28, 29, 32, 34) --- (30, 33)	chr8:144873089-144897549(-)	-------A-AA------BAB-------CCD-CDC---
chr8_0081	30	(5, 6, 7, 14) --- (11, 29)	(5, 6, 7, 14) --- (11, 29)	chr8:143545376-143626367(+)	----AAA---B--A--------------B-
chr8_0279	59	(8, 43) --- (31, 57)	(8, 43) --- (31, 57)	chr8:103265568-103424495(-)	-------A----------------------B-----------A-------------B--
chr8_0321	27	(2, 7, 15) --- (6, 14)	(2, 7, 15) --- (6, 14)	chr8:9413444-9639855(+)	-A---BA------BA------------

chr9

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chr9_0010	15	(3, 7, 8) --- (5, 6) --- (10, 11)	(3, 7, 8) --- (5, 6) --- (10, 11)	chr9:139221931-139254057(+)	--A-BBAA-CC----
chr9_0017	34	(2, 4) --- (5, 34) --- (12, 13, 14, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33)	(2, 4) --- (5, 34) --- (12, 13, 14, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33)	chr9:139388896-139440238(-)	-A-AB------CCC-CCC-CCCCCCCCCCCCCCB
chr9_0044	61	(3, 4, 5, 6, 7, 9, 11, 15, 18, 19, 20, 21, 25, 26, 27, 28, 29, 32, 33, 35, 36, 37, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 58, 60) --- (13, 40)	(3, 4, 5, 6, 7, 9, 11, 15, 18, 19, 20, 21, 25, 26, 27, 28, 29, 32, 33, 35, 36, 37, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 58, 60) --- (13, 40)	chr9:116918230-117072974(+)	--AAAAA-A-A-B-A--AAAA---AAAAA--AA-AAAAABAAAAAAAAAAAA-----A-A-
chr9_0057	57	(7, 12, 16, 30, 34, 40, 42, 47) --- (9, 54) --- (10, 33) --- (13, 15)	(7, 12, 16, 30, 34, 40, 42, 47) --- (9, 54) --- (10, 33) --- (13, 15)	chr9:131314865-131395938(+)	------A-BC-AD-DA-------------A--CA-----A-A----A------B---
chr9_0061	74	(10, 31) --- (25, 62)	(10, 31) --- (25, 62)	chr9:79792360-80032397(+)	---------A--------------B-----A------------------------------B------------
chr9_0064	48	(2, 7) --- (5, 10)	(2, 7) --- (5, 10)	chr9:8314246-10612723(-)	-A--B-A--B--------------------------------------
chr9_0149	42	(2, 18) --- (8, 9, 10, 11) --- (15, 16, 24, 27, 32, 35, 36)	(2, 18) --- (8, 9, 10, 11) --- (15, 16, 24, 27, 32, 35, 36)	chr9:101706137-101833068(+)	-A-----BBBB---CC-A-----C--C----C--CC------
chr9_0166	33	(12, 15) --- (14, 25)	(12, 15) --- (14, 25)	chr9:116207010-116360017(+)	-----------A-BA---------B--------
chr9_0195	28	(10, 22) --- (15, 16, 17, 18)	(10, 22) --- (15, 16, 17, 18)	chr9:117782805-117880486(-)	---------A----BBBB---A------
chr9_0241	48	(9, 15) --- (24, 25, 26, 27)	(9, 15) --- (24, 25, 26, 27)	chr9:113127530-113342160(-)	--------A-----A--------BBBB---------------------
chr9_0259	50	(3, 20) --- (5, 8)	(3, 20) --- (5, 8)	chr9:107543284-107690436(-)	--A-B--B-----------A------------------------------

chrX

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chrX_0033	29	(10, 21) --- (11, 12, 22) --- (13, 23)	(10, 21) --- (11, 12, 22) --- (13, 23)	chrX:48660486-48683380(+)	---------ABBC-------ABC------
chrX_0044	25	(3, 17) --- (23, 24)	(3, 17) --- (23, 24)	chrX:128580479-128657460(-)	--A-------------A-----BB-
chrX_0045	23	(3, 21) --- (5, 7) --- (10, 18) --- (20, 22)	(3, 21) --- (5, 7) --- (10, 18) --- (20, 22)	chrX:153172829-153191714(-)	--A-B-B--C-------C-DAD-
chrX_0051	37	(1, 6, 11, 21, 27, 33) --- (2, 7, 12, 17, 22, 28, 34) --- (3, 8, 13, 18, 23, 29, 35) --- (4, 9, 14, 19, 24, 30, 36) --- (25, 31, 37)	(1, 6, 11, 21, 27, 33) --- (2, 7, 12, 17, 22, 28, 34) --- (3, 8, 13, 18, 23, 29, 35) --- (4, 9, 14, 19, 24, 30, 36) --- (25, 31, 37)	chrX:49188103-49313636(+)	ABCD-ABCD-ABCD--BCD-ABCDE-ABCDE-ABCDE
chrX_0079	23	(2, 3) --- (16, 17)	(2, 3) --- (16, 17)	chrX:152082996-152142022(+)	-AA------------BB------
chrX_0116	11	(6, 8) --- (7, 9)	(6, 8) --- (7, 9)	chrX:149934809-150067179(-)	-----ABAB--
chrX_0150	48	(1, 34) --- (3, 7, 10, 13, 24, 27, 42) --- (14, 23) --- (18, 30) --- (21, 31, 35, 41)	(1, 34) --- (3, 7, 10, 13, 24, 27, 42) --- (14, 23) --- (18, 30) --- (21, 31, 35, 41)	chrX:153576899-153603006(-)	A-B---B--B--BC---D--E-CB--B--DE--AE-----EB------
chrX_0176	22	(4, 10) --- (6, 12) --- (7, 13) --- (11, 17)	(4, 10) --- (6, 12) --- (7, 13) --- (11, 17)	chrX:65382432-65487228(+)	---A-BC--ADBC---D-----
chrX_0267	21	(3, 13) --- (4, 6, 15) --- (5, 14) --- (9, 17)	(3, 13) --- (4, 6, 15) --- (5, 14) --- (9, 17)	chrX:130407482-130423403(-)	--ABCB--D---ACB-D----
chrX_0282	32	(1, 2) --- (26, 32)	(1, 2) --- (26, 32)	chrX:110924345-111003873(+)	AA-----------------------B-----B
chrX_0420	6	(1, 4) --- (2, 5) --- (3, 6)	(1, 4) --- (2, 5) --- (3, 6)	chrX:120092021-120100198(-)	ABCABC
chrX_0536	10	(1, 6) --- (2, 7) --- (3, 8) --- (4, 9)	(1, 6) --- (2, 7) --- (3, 8) --- (4, 9)	chrX:49335037-49351811(+)	ABCD-ABCD-
chrX_0560	10	(2, 7) --- (3, 8) --- (4, 9) --- (5, 10)	(2, 7) --- (3, 8) --- (4, 9) --- (5, 10)	chrX:134866213-134891518(+)	-ABCD-ABCD

chrY

ID	#exons	components / multiple alns	similarity	UCSC	pattern
chrY_0005	7	(1, 5, 6) --- (3, 4)	(1, 5, 6) --- (3, 4)	chrY:9544434-9552871(-)	A-BBAA-
chrY_0009	29	(2, 7) --- (3, 8) --- (5, 10) --- (6, 11) --- (12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26)	(2, 7) --- (3, 8) --- (5, 10) --- (6, 11) --- (12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26)	chrY:26980088-27053180(+)	-AB-CDAB-CDEEEEEEEEEEEEEEE---
chrY_0020	16	(1, 5) --- (2, 6) --- (3, 7) --- (11, 12, 13, 14)	(1, 5) --- (2, 6) --- (3, 7) --- (11, 12, 13, 14)	chrY:24455009-24564026(+)	ABC-ABC---DDDD--
chrY_0049	8	(2, 6) --- (3, 8) --- (5, 7)	(2, 6) --- (3, 8) --- (5, 7)	chrY:9573894-9596084(+)	-AB-CACB
chrY_0050	28	(4, 5, 6, 7, 8, 9, 10, 11, 12) --- (13, 18, 23) --- (14, 19, 24) --- (16, 21, 26) --- (17, 22, 27)	(4, 5, 6, 7, 8, 9, 10, 11, 12) --- (13, 18, 23) --- (14, 19, 24) --- (16, 21, 26) --- (17, 22, 27)	chrY:25275508-25345140(-)	---AAAAAAAAABC-DEBC-DEBC-DE-
chrY_0066	14	(1, 2) --- (3, 9) --- (4, 10) --- (5, 11) --- (6, 12) --- (7, 13)	(1, 2) --- (3, 9) --- (4, 10) --- (5, 11) --- (6, 12) --- (7, 13)	chrY:9215730-9368122(+)	AABCDEF-BCDEF-
chrY_0067	8	(1, 6) --- (2, 4) --- (3, 7)	(1, 6) --- (2, 4) --- (3, 7)	chrY:6274285-6296485(-)	ABCB-AC-
chrY_0073	5	(1, 4) --- (2, 3)	(1, 4) --- (2, 3)	chrY:9590764-9611898(-)	ABBA-
chrY_0081	7	(2, 3, 7) --- (4, 5)	(2, 3, 7) --- (4, 5)	chrY:6317508-6325945(+)	-AABB-A
chrY_0082	5	(2, 5) --- (3, 4)	(2, 5) --- (3, 4)	chrY:6258471-6279605(+)	-ABBA