Table of highly similar exons with LARGE COMPONENTS (>=10)

chr1

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr1_0009 107 (2, 3, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 23, 24, 26, 30, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 75, 78, 79, 85, 89, 97) --- (29, 34, 48, 87) --- (47, 49, 95) --- (50, 105) --- (81, 83) --- (90, 104) --- (96, 102) (2, 3, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 23, 24, 26, 30, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 75, 78, 79, 85, 89, 97) --- (29, 34, 48, 87) --- (47, 49, 95) --- (50, 105) --- (81, 83) --- (90, 104) --- (96, 102) chr1:228395860-228566575(+) -AA---AAAAAAAAAAA-AAA-AA-A--BA---B-AAAAAAAAAAACBCD------------------------A--AA-E-E-A-B-AF----CGA----G-FD--
chr1_0013 60 (2, 10, 11, 12, 13, 14, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 32, 33, 35, 38, 40, 41, 42, 43, 44, 52, 54, 55, 56, 57) (2, 10, 11, 12, 13, 14, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 32, 33, 35, 38, 40, 41, 42, 43, 44, 52, 54, 55, 56, 57) chr1:86194917-86622121(-) -A-------AAAAA--AAAAAAAAAAAAA--AA-A--A-AAAAA-------A-AAAA---
chr1_0102 68 (5, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 36, 37, 38, 39, 41, 43, 45, 47, 49, 50, 51, 52, 53, 54, 56, 57, 63) (5, 6, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 36, 37, 38, 39, 41, 43, 45, 47, 49, 50, 51, 52, 53, 54, 56, 57, 63) chr1:103342023-103574052(-) ----AA-AAAAAAAAAAAAAAAAAAAAAAAAA-A-AAAA-A-A-A-A-AAAAAA-AA-----A-----
chr1_0128 107 (19, 26, 27, 29, 31, 32, 34, 35, 36, 37, 38, 40, 42, 43, 44, 45, 46, 50, 51, 53, 57, 58, 59, 60, 61, 62, 64, 65, 67, 68, 69, 70, 71, 72, 78, 79, 81) --- (20, 24) --- (73, 98) --- (83, 86) --- (88, 89) --- (99, 101, 103, 105) (19, 26, 27, 29, 31, 32, 34, 35, 36, 37, 38, 40, 42, 43, 44, 45, 46, 50, 51, 53, 57, 58, 59, 60, 61, 62, 64, 65, 67, 68, 69, 70, 71, 72, 78, 79, 81) --- (20, 24) --- (73, 98) --- (83, 86) --- (88, 89) --- (99, 101, 103, 105) chr1:185703682-186160085(+) ------------------AB---B-AA-A-AA-AAAAA-A-AAAAA---AA-A---AAAAAA-AA-AAAAAAC----AA-A-D--D-EE--------CF-F-F-F--
chr1_0180 86 (1, 6) --- (2, 7) --- (3, 8) --- (4, 9) --- (5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64, 66, 68, 70, 72, 74, 76, 78, 80, 82, 84, 86) (1, 6) --- (2, 7) --- (3, 8) --- (4, 9) --- (5, 10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64, 66, 68, 70, 72, 74, 76, 78, 80, 82, 84, 86) chr1:145293370-145368682(+) ABCDEABCDE-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E-E
chr1_0371 71 (3, 5, 8, 10, 15, 16, 18, 20, 21, 22, 25, 27, 30, 36, 39, 40, 41, 53, 55, 59) --- (11, 47) (3, 5, 8, 10, 15, 16, 18, 20, 21, 22, 25, 27, 30, 36, 39, 40, 41, 53, 55, 59) --- (11, 47) chr1:32117847-32169768(-) --A-A--A-AB---AA-A-AAA--A-A--A-----A--AAA-----B-----A-A---A------------
chr1_0380 97 (4, 11) --- (12, 90, 91) --- (21, 31, 33, 35, 37, 39, 41, 43, 45, 47, 49) --- (30, 32, 34, 36, 38, 40, 42, 46, 48) --- (50, 52) --- (58, 70, 78) --- (61, 71, 81) --- (62, 72, 73) --- (69, 79) (4, 11) --- (12, 90, 91) --- (21, 31, 33, 35, 37, 39, 41, 43, 45, 47, 49) --- (30, 32, 34, 36, 38, 40, 42, 46, 48) --- (50, 52) --- (58, 70, 78) --- (61, 71, 81) --- (62, 72, 73) --- (69, 79) chr1:22148737-22263750(-) ---A------AB--------C--------DCDCDCDCDCDCDC-CDCDCE-E-----F--GH------IFGHH----FI-G--------BB------
chr1_0530 32 (1, 2, 3, 5, 9, 10, 11, 12, 14, 15, 16, 19, 20, 21, 24, 25, 29, 31) (1, 2, 3, 5, 9, 10, 11, 12, 14, 15, 16, 19, 20, 21, 24, 25, 29, 31) chr1:40766162-40782939(-) AAA-A---AAAA-AAA--AAA--AA---A-A-
chr1_0578 37 (3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 34) --- (27, 28, 30, 33) (3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 34) --- (27, 28, 30, 33) chr1:3404512-3528059(-) --AAAAAAAAAAAAAAAAAAAAAAA-BB-B--BA---
chr1_0668 34 (10, 12, 13, 14, 20, 23, 24, 25, 26, 30, 31) --- (28, 29) (10, 12, 13, 14, 20, 23, 24, 25, 26, 30, 31) --- (28, 29) chr1:120454177-120612276(-) ---------A-AAA-----A--AAAA-BBAA---

chr10

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr10_0022 68 (6, 9, 11, 13, 14, 15, 18, 21, 23, 25, 27, 28, 30, 31, 33, 38, 39, 41, 43, 45, 48, 52, 54) --- (26, 36) --- (37, 56) (6, 9, 11, 13, 14, 15, 18, 21, 23, 25, 27, 28, 30, 31, 33, 38, 39, 41, 43, 45, 48, 52, 54) --- (26, 36) --- (37, 56) chr10:73156703-73575702(+) -----A--A-A-AAA--A--A-A-ABAA-AA-A--BCAA-A-A-A--A---A-A-C------------
chr10_0025 46 (28, 29, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 43, 44) (28, 29, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 43, 44) chr10:61788159-62149488(-) ---------------------------AA-AAAAAAAAAA--AA--
chr10_0041 53 (7, 10, 13, 16, 17, 20, 23, 26, 29, 32, 35, 38, 41, 46) (7, 10, 13, 16, 17, 20, 23, 26, 29, 32, 35, 38, 41, 46) chr10:124320180-124403252(+) ------A--A--A--AA--A--A--A--A--A--A--A--A----A-------
chr10_0263 56 (2, 4, 5, 6, 14, 17, 20, 22, 26, 31, 33, 35) --- (11, 18) --- (45, 46) (2, 4, 5, 6, 14, 17, 20, 22, 26, 31, 33, 35) --- (11, 18) --- (45, 46) chr10:105791047-105845638(-) -A-AAA----B--A--AB-A-A---A----A-A-A---------CC----------

chr11

ID#exonscomponents / multiple alnssimilarityUCSCpattern

chr12

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr12_0013 54 (1, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 36, 37, 39, 41, 42, 43, 44, 49) (1, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 36, 37, 39, 41, 42, 43, 44, 49) chr12:48366748-48398285(-) A--AAAAAAAAAAAAAAAAAAA-AAAAAAAAAAA-AA-A-AAAA----A-----
chr12_0238 89 (2, 16, 17, 18, 19, 20, 21, 48, 50, 51, 53, 54, 63, 64, 65, 66, 67, 68, 69, 70, 71, 73) --- (5, 56, 75) --- (12, 13, 25, 26, 27, 30, 31, 37, 38, 59, 60, 61, 77, 78) --- (15, 41) (2, 16, 17, 18, 19, 20, 21, 48, 50, 51, 53, 54, 63, 64, 65, 66, 67, 68, 69, 70, 71, 73) --- (5, 56, 75) --- (12, 13, 25, 26, 27, 30, 31, 37, 38, 59, 60, 61, 77, 78) --- (15, 41) chr12:57522281-57607123(+) -A--B------CC-DAAAAAA---CCC--CC-----CC--D------A-AA-AA-B--CCC-AAAAAAAAA-A-B-CC-----------

chr13

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr13_0001 48 (3, 5, 19, 20, 22, 25, 28, 31, 32, 36, 38, 39, 40, 42) --- (17, 21, 24, 27, 29, 30, 33, 34, 43, 44, 45, 48) (3, 5, 19, 20, 22, 25, 28, 31, 32, 36, 38, 39, 40, 42) --- (17, 21, 24, 27, 29, 30, 33, 34, 43, 44, 45, 48) chr13:110959630-111165371(+) --A-A-----------B-AABA-BA-BABBAABB-A-AAA-ABBB--B
chr13_0063 33 (12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28) (12, 14, 15, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28) chr13:78109808-78219396(+) -----------A-AAAAAAAAA-AAAAA-----
chr13_0120 52 (5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 28, 31, 32, 34, 36, 43, 46, 47, 50) (5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 28, 31, 32, 34, 36, 43, 46, 47, 50) chr13:110801310-110959496(-) ----AAAAAAA-AAAAAA-AAAAAAA-A--AA-A-A------A--AA--A--

chr14

ID#exonscomponents / multiple alnssimilarityUCSCpattern

chr15

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr15_0132 66 (4, 5, 7, 8, 10, 13, 14, 17, 18, 19, 20, 21, 22, 23, 27, 30, 31, 32, 33, 34, 36, 38, 40, 41, 43, 46, 47, 48, 51, 52, 53, 58, 59) (4, 5, 7, 8, 10, 13, 14, 17, 18, 19, 20, 21, 22, 23, 27, 30, 31, 32, 33, 34, 36, 38, 40, 41, 43, 46, 47, 48, 51, 52, 53, 58, 59) chr15:48700503-48937985(-) ---AA-AA-A--AA--AAAAAAA---A--AAAAA-A-A-AA-A--AAA--AAA----AA-------
chr15_0142 23 (5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18) (5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18) chr15:66187633-66546075(-) ----A-AAAAAAAAAAAA-----

chr16

ID#exonscomponents / multiple alnssimilarityUCSCpattern

chr17

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr17_0428 51 (2, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 35, 36, 38, 40, 41, 42, 43, 44) (2, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 35, 36, 38, 40, 41, 42, 43, 44) chr17:48261458-48279000(-) -A-AAAAA-AAAAAAAAAAAA-AAAAAAAAAAA-AA-A-AAAAA-------

chr18

ID#exonscomponents / multiple alnssimilarityUCSCpattern

chr19

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr19_0074 35 (3, 9) --- (11, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 31, 34, 35) (3, 9) --- (11, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 31, 34, 35) chr19:41099071-41135725(+) --A-----A-B----BBBBBBBBBBB----B--BB
chr19_0264 63 (3, 4, 5, 6, 7, 8, 10, 11, 13, 14, 17, 18, 19, 20, 21, 22, 23, 26, 27, 30, 31, 32, 35, 36, 37, 38, 39, 40, 41, 43, 46, 47, 48, 50, 51, 52, 53) --- (15, 24, 49) (3, 4, 5, 6, 7, 8, 10, 11, 13, 14, 17, 18, 19, 20, 21, 22, 23, 26, 27, 30, 31, 32, 35, 36, 37, 38, 39, 40, 41, 43, 46, 47, 48, 50, 51, 52, 53) --- (15, 24, 49) chr19:8130287-8212385(-) --AAAAAA-AA-AAB-AAAAAAAB-AA--AAA--AAAAAAA-A--AAABAAAA----------
chr19_0281 36 (4, 6, 8, 12, 14, 16, 20, 22, 24, 28, 30, 32, 36) --- (7, 15, 23) --- (9, 13, 17, 21, 25, 29, 31) --- (10, 18, 26) --- (11, 19, 27) (4, 6, 8, 12, 14, 16, 20, 22, 24, 28, 30, 32, 36) --- (7, 15, 23) --- (9, 13, 17, 21, 25, 29, 31) --- (10, 18, 26) --- (11, 19, 27) chr19:40353963-40440533(-) ---A-ABACDEACABACDEACABACDEACACA---A
chr19_0368 67 (1, 6, 8, 9, 10, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 37, 38, 39, 41, 43, 45, 47, 49, 50, 51, 52, 53, 54, 56, 57, 62, 64) (1, 6, 8, 9, 10, 11, 12, 13, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 37, 38, 39, 41, 43, 45, 47, 49, 50, 51, 52, 53, 54, 56, 57, 62, 64) chr19:10070236-10121147(-) A----A-AAAAAA--AAAAAAAAAAAAAAAAA-A--AAA-A-A-A-A-AAAAAA-AA----A-A---
chr19_0417 84 (10, 15, 19, 22, 24, 27, 29, 32, 34, 37, 39, 42, 44, 47, 49, 52, 54, 57, 59, 62, 64, 67, 69, 72, 74, 77) --- (11, 16, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75) --- (12, 17, 21, 26, 31, 36, 41, 46, 51, 56, 61, 66, 71, 76) (10, 15, 19, 22, 24, 27, 29, 32, 34, 37, 39, 42, 44, 47, 49, 52, 54, 57, 59, 62, 64, 67, 69, 72, 74, 77) --- (11, 16, 20, 25, 30, 35, 40, 45, 50, 55, 60, 65, 70, 75) --- (12, 17, 21, 26, 31, 36, 41, 46, 51, 56, 61, 66, 71, 76) chr19:8959520-9092018(-) ---------ABC--ABC-ABCA-ABCA-ABCA-ABCA-ABCA-ABCA-ABCA-ABCA-ABCA-ABCA-ABCA-ABCA-------
chr19_0667 33 (12, 13, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28, 29, 30, 32) (12, 13, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28, 29, 30, 32) chr19:15270444-15311792(-) -----------AA---AAAAAAAAAA-AAA-A-

chr2

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr2_0002 183 (5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 27, 29, 30, 31, 32, 33, 37, 38, 39, 45, 46, 48, 49, 50, 52, 53, 57, 58, 61, 62, 63, 64, 67, 69, 70, 71, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 163, 164, 165, 166, 167, 168, 170, 171, 173, 174, 176, 178) --- (26, 34, 41) --- (44, 162, 169) (5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 27, 29, 30, 31, 32, 33, 37, 38, 39, 45, 46, 48, 49, 50, 52, 53, 57, 58, 61, 62, 63, 64, 67, 69, 70, 71, 74, 75, 76, 77, 78, 79, 80, 81, 82, 83, 84, 85, 86, 87, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 99, 100, 101, 102, 103, 104, 105, 106, 107, 108, 109, 110, 111, 112, 113, 114, 115, 116, 117, 118, 119, 120, 121, 122, 123, 124, 125, 126, 127, 128, 129, 130, 131, 132, 133, 134, 135, 136, 137, 138, 139, 140, 141, 142, 143, 144, 145, 146, 147, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 163, 164, 165, 166, 167, 168, 170, 171, 173, 174, 176, 178) --- (26, 34, 41) --- (44, 162, 169) chr2:152341854-152591001(-) ----A-AAAAAAAAAAAAAA-AAAABA-AAAAAB--AAA-B--CAA-AAA-AA---AA--AAAA--A-AAA--AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAAACAA-AA-A-A-----
chr2_0022 51 (4, 6, 7, 8, 9, 10, 11, 13, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48) (4, 6, 7, 8, 9, 10, 11, 13, 15, 16, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48) chr2:189839098-189877472(+) ---A-AAAAAA-A-AA-AAAAAAAAAAA-AAAAAAAAAAAAAAAAAAA---
chr2_0039 316 (6, 7, 8, 11, 13, 14, 15, 17, 19, 22, 23, 24, 25, 26, 28, 29, 30, 31, 32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 46, 47, 49, 50, 52, 53, 54, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 68, 72, 73, 74, 76, 77, 81, 82, 86, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 100, 101, 102, 105, 107, 109, 110, 111, 117, 129, 143, 144, 145, 146, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 204, 206, 218, 220, 222, 224, 226, 227, 228, 230, 232, 234, 236, 237, 238, 240, 242, 244, 246, 247, 250, 252, 253, 254, 256, 258, 259, 260, 262, 264, 265, 268, 269, 270, 278, 280, 298, 300, 304, 305, 306, 307, 308, 312) --- (18, 78) --- (115, 134, 284) --- (120, 122, 137) --- (125, 130, 135) --- (126, 131) --- (127, 132) --- (128, 133) --- (219, 229, 239) --- (221, 231, 241) --- (223, 233, 243, 249, 255, 261) --- (225, 235, 245, 251, 257, 263) (6, 7, 8, 11, 13, 14, 15, 17, 19, 22, 23, 24, 25, 26, 28, 29, 30, 31, 32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 46, 47, 49, 50, 52, 53, 54, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 68, 72, 73, 74, 76, 77, 81, 82, 86, 88, 89, 90, 91, 92, 93, 94, 95, 96, 97, 98, 100, 101, 102, 105, 107, 109, 110, 111, 117, 129, 143, 144, 145, 146, 148, 149, 150, 151, 152, 153, 154, 155, 156, 157, 158, 159, 160, 161, 162, 164, 165, 166, 167, 168, 169, 170, 171, 172, 173, 174, 175, 176, 177, 178, 179, 180, 181, 182, 183, 184, 185, 186, 187, 188, 189, 191, 192, 193, 194, 195, 196, 197, 198, 199, 200, 201, 204, 206, 218, 220, 222, 224, 226, 227, 228, 230, 232, 234, 236, 237, 238, 240, 242, 244, 246, 247, 250, 252, 253, 254, 256, 258, 259, 260, 262, 264, 265, 268, 269, 270, 278, 280, 298, 300, 304, 305, 306, 307, 308, 312) --- (18, 78) --- (115, 134, 284) --- (120, 122, 137) --- (125, 130, 135) --- (126, 131) --- (127, 132) --- (128, 133) --- (219, 229, 239) --- (221, 231, 241) --- (223, 233, 243, 249, 255, 261) --- (225, 235, 245, 251, 257, 263) chr2:179390719-179672150(-) -----AAA--A-AAA-ABA--AAAAA-AAAAA-AAAAAAAAAAA-AA-AA-AAA--AAAAAAAAAA-A---AAA-AAB--AA---A-AAAAAAAAAAA-AAA--A-A-AAA---C-A--D-D--EFGHAEFGHCE-D-----AAAA-AAAAAAAAAAAAAAA-AAAAAAAAAAAAAAAAAAAAAAAAAA-AAAAAAAAAAA--A-A-----------AIAJAKALAAAIAJAKALAAAIAJAKALAA-KALAAAKALAAAKALAA--AAA-------A-A---C-------------A-A---AAAAA---A----
chr2_0060 76 (8, 10, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64, 66) --- (12, 15) --- (13, 16) --- (17, 72) --- (20, 22) (8, 10, 24, 26, 28, 30, 32, 34, 36, 38, 40, 42, 44, 46, 48, 50, 52, 54, 56, 58, 60, 62, 64, 66) --- (12, 15) --- (13, 16) --- (17, 72) --- (20, 22) chr2:97779232-97930255(+) -------A-A-BC-BCD--E-E-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-A-----D----
chr2_0180 91 (18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 37, 38, 41, 44, 71, 72, 75, 76, 90) --- (20, 39) --- (51, 77) --- (55, 62, 67, 80) --- (61, 65) (18, 19, 21, 22, 23, 24, 25, 26, 27, 28, 29, 37, 38, 41, 44, 71, 72, 75, 76, 90) --- (20, 39) --- (51, 77) --- (55, 62, 67, 80) --- (61, 65) chr2:140988995-142889270(-) -----------------AABAAAAAAAAA-------AAB-A--A------C---D-----ED--E-D---AA--AAC--D---------A-
chr2_0190 52 (3, 6, 7, 9, 10, 14, 15, 17, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 42, 43, 44, 45, 47) (3, 6, 7, 9, 10, 14, 15, 17, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 42, 43, 44, 45, 47) chr2:228029280-228179507(+) --A--AA-AA---AA-A---A--AAAAAAAAAAAAAAAA--AAAA-A-----
chr2_0350 79 (17, 20, 21, 22, 23, 24, 31, 33, 56, 57, 73, 74, 76, 78) --- (28, 51, 62) (17, 20, 21, 22, 23, 24, 31, 33, 56, 57, 73, 74, 76, 78) --- (28, 51, 62) chr2:169983619-170219122(-) ----------------A--AAAAA---B--A-A-----------------B----AA----B----------AA-A-A-
chr2_0352 44 (11, 13, 15, 17, 19, 21, 23, 25, 27, 29, 31, 33, 35, 37) (11, 13, 15, 17, 19, 21, 23, 25, 27, 29, 31, 33, 35, 37) chr2:98121260-98206428(-) ----------A-A-A-A-A-A-A-A-A-A-A-A-A-A-------
chr2_0403 54 (4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 21, 22, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 36, 37, 39, 41, 42, 43, 44, 45, 48, 49) (4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 18, 19, 21, 22, 24, 25, 26, 27, 29, 30, 31, 32, 33, 34, 36, 37, 39, 41, 42, 43, 44, 45, 48, 49) chr2:189896641-190044605(-) ---AAAAAAAA-AAAAAAA-AA-AAAA-AAAAAA-AA-A-AAAAA--AA-----
chr2_0442 48 (4, 7, 8, 9, 10, 11, 12, 14, 15, 16, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 32, 34, 35, 39, 42) --- (17, 44) (4, 7, 8, 9, 10, 11, 12, 14, 15, 16, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 32, 34, 35, 39, 42) --- (17, 44) chr2:227867434-228029275(-) ---A--AAAAAA-AAAB-AAAA-AAAAAAA-A-AA---A--A-B----
chr2_0808 32 (5, 6, 7, 8, 9, 11, 12, 13, 14, 17, 18, 19, 20, 28) (5, 6, 7, 8, 9, 11, 12, 13, 14, 17, 18, 19, 20, 28) chr2:241938254-242033643(+) ----AAAAA-AAAA--AAAA-------A----

chr20

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr20_0086 80 (3, 43) --- (7, 64) --- (25, 46, 62, 63) --- (34, 36, 37, 40, 54, 60, 65, 66, 67, 68, 69, 71) (3, 43) --- (7, 64) --- (25, 46, 62, 63) --- (34, 36, 37, 40, 54, 60, 65, 66, 67, 68, 69, 71) chr20:60884122-60942368(-) --A---B-----------------C--------D-DD--D--A--C-------D-----D-CCBDDDDD-D---------
chr20_0087 32 (1, 4, 5, 8, 9, 11, 13, 14, 15, 16, 17, 19, 21, 22, 23, 24, 28, 30, 31, 32) (1, 4, 5, 8, 9, 11, 13, 14, 15, 16, 17, 19, 21, 22, 23, 24, 28, 30, 31, 32) chr20:61448413-61472510(+) A--AA--AA-A-AAAAA-A-AAAA---A-AAA

chr21

ID#exonscomponents / multiple alnssimilarityUCSCpattern

chr22

ID#exonscomponents / multiple alnssimilarityUCSCpattern

chr3

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr3_0207 118 (7, 8, 9, 11, 12, 13, 14, 16, 17, 18, 22, 24, 25, 26, 32, 33, 35, 43, 44, 46, 47, 52, 56, 58, 61, 65, 68, 70, 71, 79, 80, 81, 83, 84, 87, 88, 93, 103, 107, 111, 116, 118) (7, 8, 9, 11, 12, 13, 14, 16, 17, 18, 22, 24, 25, 26, 32, 33, 35, 43, 44, 46, 47, 52, 56, 58, 61, 65, 68, 70, 71, 79, 80, 81, 83, 84, 87, 88, 93, 103, 107, 111, 116, 118) chr3:48601505-48632593(-) ------AAA-AAAA-AAA---A-AAA-----AA-A-------AA-AA----A---A-A--A---A--A-AA-------AAA-AA--AA----A---------A---A---A----A-A

chr4

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr4_0132 49 (5, 7, 10, 11, 13, 14, 15, 16, 18, 19, 20, 21, 22) (5, 7, 10, 11, 13, 14, 15, 16, 18, 19, 20, 21, 22) chr4:113739238-114304894(+) ----A-A--AA-AAAA-AAAAA---------------------------

chr5

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr5_0012 65 (5, 6, 7, 8, 10, 12, 14, 18, 19, 21, 22, 23, 26, 27, 30, 31, 36, 37, 38, 39, 40, 41, 43, 46, 47, 48, 51, 52, 53, 54, 55, 59) (5, 6, 7, 8, 10, 12, 14, 18, 19, 21, 22, 23, 26, 27, 30, 31, 36, 37, 38, 39, 40, 41, 43, 46, 47, 48, 51, 52, 53, 54, 55, 59) chr5:127593601-127873735(-) ----AAAA-A-A-A---AA-AAA--AA--AA----AAAAAA-A--AAA--AAAAA---A------
chr5_0105 34 (3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 25, 27, 30) --- (12, 14, 20, 22, 26) (3, 5, 7, 9, 11, 13, 15, 17, 19, 21, 23, 25, 27, 30) --- (12, 14, 20, 22, 26) chr5:147443534-147516925(+) --A-A-A-A-ABABA-A-ABABA-ABA--A----
chr5_0140 18 (1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13) (1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13) chr5:140165875-140391929(+) AAAAAAAAAAAAA-----
chr5_0353 25 (1, 2, 3, 5, 7, 9, 10, 12, 14, 16, 18, 19) --- (4, 6, 8, 11, 13) (1, 2, 3, 5, 7, 9, 10, 12, 14, 16, 18, 19) --- (4, 6, 8, 11, 13) chr5:140710251-140892546(+) AAABABABAABABA-A-AA------

chr6

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr6_0045 66 (5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 35, 36, 37, 38, 40, 42, 44, 46, 48, 49, 50, 51, 52, 53, 55, 56, 63, 66) (5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 33, 35, 36, 37, 38, 40, 42, 44, 46, 48, 49, 50, 51, 52, 53, 55, 56, 63, 66) chr6:33130468-33160245(-) ----A-AAAAAAAAAAAAAAAAAAAAAAAAA-A-AAAA-A-A-A-A-AAAAAA-AA------A--A
chr6_0055 44 (13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37) (13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37) chr6:32008931-32077151(-) ------------AAAAAAAAAAAAAAAAAAAAAAAAA-------
chr6_0200 51 (8, 9, 12, 13, 15, 19, 22, 23, 24, 27, 29, 33, 35, 36, 41, 44, 47, 50) --- (16, 25, 30, 49) (8, 9, 12, 13, 15, 19, 22, 23, 24, 27, 29, 33, 35, 36, 41, 44, 47, 50) --- (16, 25, 30, 49) chr6:70576447-70922157(+) -------AA--AA-AB--A--AAAB-A-AB--A-AA----A--A--A-BA-
chr6_0228 40 (2, 40) --- (9, 11, 13, 15, 17, 19, 21, 23, 25, 27, 29, 31, 33, 35, 37) --- (10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38) (2, 40) --- (9, 11, 13, 15, 17, 19, 21, 23, 25, 27, 29, 31, 33, 35, 37) --- (10, 12, 14, 16, 18, 20, 22, 24, 26, 28, 30, 32, 34, 36, 38) chr6:160952515-161087407(-) -A------BCBCBCBCBCBCBCBCBCBCBCBCBCBCBC-A
chr6_0236 39 (1, 2, 3, 5, 9, 11, 15, 16, 17, 18, 19, 20, 21, 24, 25, 28, 29, 31) (1, 2, 3, 5, 9, 11, 15, 16, 17, 18, 19, 20, 21, 24, 25, 28, 29, 31) chr6:70925743-71012786(-) AAA-A---A-A---AAAAAAA--AA--AA-A--------
chr6_0259 37 (2, 18, 19, 22, 24, 25, 26, 27, 28, 29, 30, 32, 33, 34, 36) (2, 18, 19, 22, 24, 25, 26, 27, 28, 29, 30, 32, 33, 34, 36) chr6:32158543-32191844(-) -A---------------AA--A-AAAAAAA-AAA-A-
chr6_0587 30 (1, 2, 3, 5, 9, 10, 12, 14, 15, 17, 18, 20) (1, 2, 3, 5, 9, 10, 12, 14, 15, 17, 18, 20) chr6:55921388-56112378(-) AAA-A---AA-A-AA-AA-A----------

chr7

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr7_0100 48 (12, 17, 21, 24, 26, 27, 28, 33, 34, 35, 37, 38, 41, 45, 46) (12, 17, 21, 24, 26, 27, 28, 33, 34, 35, 37, 38, 41, 45, 46) chr7:128470482-128499327(+) -----------A----A---A--A-AAA----AAA-AA--A---AA--
chr7_0172 103 (5, 30, 32, 33, 49, 50, 55, 56, 59, 64, 65, 74, 78, 79, 80, 81, 85, 87, 90, 91, 93, 94, 95) --- (8, 15, 63, 98) --- (11, 99) --- (16, 61) --- (19, 35, 38) --- (25, 29, 66) --- (43, 48) --- (45, 82) --- (52, 57) --- (86, 100) (5, 30, 32, 33, 49, 50, 55, 56, 59, 64, 65, 74, 78, 79, 80, 81, 85, 87, 90, 91, 93, 94, 95) --- (8, 15, 63, 98) --- (11, 99) --- (16, 61) --- (19, 35, 38) --- (25, 29, 66) --- (43, 48) --- (45, 82) --- (52, 57) --- (86, 100) chr7:149473130-149531051(+) ----A--B--C---BD--E-----F---FA-AA-E--E----G-H--GAA-I--AAI-A-D-BAAF-------A---AAAAH--AJA--AA-AAA--BCJ---
chr7_0177 52 (1, 5, 8, 9, 10, 11, 12, 14, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49) (1, 5, 8, 9, 10, 11, 12, 14, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 31, 32, 33, 34, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49) chr7:94023872-94060544(+) A---A--AAAAA-A-AA-AAAAAAAAAAA-AAAA-AAAAAAAAAAAAAA---
chr7_0282 39 (1, 10, 12, 13, 14, 15, 16, 17, 18, 20, 22, 24, 26, 29, 30, 32, 35, 36) --- (5, 37) --- (7, 8, 23) --- (11, 27, 33) (1, 10, 12, 13, 14, 15, 16, 17, 18, 20, 22, 24, 26, 29, 30, 32, 35, 36) --- (5, 37) --- (7, 8, 23) --- (11, 27, 33) chr7:128516920-128550773(-) A---B-CC-ADAAAAAAA-A-ACA-AD-AA-AD-AAB--

chr8

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr8_0060 46 (26, 32) --- (27, 28, 29, 30, 33, 34, 35, 36, 37, 38, 39, 42) --- (31, 41) (26, 32) --- (27, 28, 29, 30, 33, 34, 35, 36, 37, 38, 39, 42) --- (31, 41) chr8:41510744-41754280(-) -------------------------ABBBBCABBBBBBB-CB----
chr8_0126 65 (2, 3, 5, 8, 9, 10, 11, 13, 14, 15, 16, 17, 19, 20, 25, 28, 29, 30, 31, 32, 33, 36, 37, 39, 40, 41, 42, 43, 44, 45, 49, 51, 52, 53, 55, 63, 64) (2, 3, 5, 8, 9, 10, 11, 13, 14, 15, 16, 17, 19, 20, 25, 28, 29, 30, 31, 32, 33, 36, 37, 39, 40, 41, 42, 43, 44, 45, 49, 51, 52, 53, 55, 63, 64) chr8:139600478-139926236(-) -AA-A--AAAA-AAAAA-AA----A--AAAAAA--AA-AAAAAAA---A-AAA-A-------AA-

chr9

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chr9_0017 34 (2, 4) --- (5, 34) --- (12, 13, 14, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33) (2, 4) --- (5, 34) --- (12, 13, 14, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33) chr9:139388896-139440238(-) -A-AB------CCC-CCC-CCCCCCCCCCCCCCB
chr9_0044 61 (3, 4, 5, 6, 7, 9, 11, 15, 18, 19, 20, 21, 25, 26, 27, 28, 29, 32, 33, 35, 36, 37, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 58, 60) --- (13, 40) (3, 4, 5, 6, 7, 9, 11, 15, 18, 19, 20, 21, 25, 26, 27, 28, 29, 32, 33, 35, 36, 37, 38, 39, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 58, 60) --- (13, 40) chr9:116918230-117072974(+) --AAAAA-A-A-B-A--AAAA---AAAAA--AA-AAAAABAAAAAAAAAAAA-----A-A-
chr9_0076 66 (11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 23, 25, 27, 29, 30, 31, 32, 34, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 61, 62, 65, 66) (11, 12, 13, 14, 15, 16, 17, 18, 19, 21, 23, 25, 27, 29, 30, 31, 32, 34, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 61, 62, 65, 66) chr9:137533651-137736686(+) ----------AAAAAAAAA-A-A-A-A-AAAA-A-AAAAAAAAAAAAAAAAAAAAAAAA-AA--AA

chrX

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chrX_0019 46 (4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 30, 33, 34, 37, 39, 40, 42) (4, 5, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 17, 18, 19, 20, 22, 23, 24, 25, 26, 27, 28, 30, 33, 34, 37, 39, 40, 42) chrX:107398837-107682704(-) ---AAAAAAAAA-AAAAAAA-AAAAAAA-A--AA--A-AA-A----
chrX_0133 51 (3, 6, 7, 9, 10, 13, 14, 15, 17, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 41, 42, 43, 44, 45, 46) (3, 6, 7, 9, 10, 13, 14, 15, 17, 19, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 41, 42, 43, 44, 45, 46) chrX:107683153-107940775(+) --A--AA-AA--AAA-A-AAA-AAAAAAAAAAAAAAAAA-AAAAAA-----
chrX_0249 20 (4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18) (4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18) chrX:134975784-134995219(+) ---AAAAAAAAAAAAAAA--

chrY

ID#exonscomponents / multiple alnssimilarityUCSCpattern
chrY_0009 29 (2, 7) --- (3, 8) --- (5, 10) --- (6, 11) --- (12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26) (2, 7) --- (3, 8) --- (5, 10) --- (6, 11) --- (12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26) chrY:26980088-27053180(+) -AB-CDAB-CDEEEEEEEEEEEEEEE---
chrY_0027 28 (7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25) (7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25) chrY:25365702-25437496(+) ------AAAAAAAAAAAAAAAAAAA---