******************************************************************************** MEME - Motif discovery tool ******************************************************************************** MEME version 3.5.1 (Release date: 2006/02/01 02:08:55) For further information on how to interpret these results or to get a copy of the MEME software please access http://meme.nbcr.net. This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme.nbcr.net. ******************************************************************************** ******************************************************************************** REFERENCE ******************************************************************************** If you use this program in your research, please cite: Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994. ******************************************************************************** ******************************************************************************** TRAINING SET ******************************************************************************** DATAFILE= /home/sonja/vaultRNAs/MAMMALIA-MEME-MOTIFS/Seqs/Mamm-fin.mfa ALPHABET= ACGT Sequence name Weight Length Sequence name Weight Length ------------- ------ ------ ------------- ------ ------ hsa_1_Hs_AF045143_vaulta 0.3000 648 ptr_1_Pan_a_ENSPTRG00000 0.3000 648 ggo_1_Gorilla_gorilla 0.3000 648 ppy_1_Pongo_NSPPYG000000 0.3000 647 mac_1_Macaque_ENSMMUG000 0.5000 650 caj_1_Callithrix_jacchus 0.5000 650 hsa_2_Hs_AF045144_vaulta 0.2000 638 ptr_2_Pan_b_ENSPTRG00000 0.2000 638 hsa_3_Hs_AF045145_vaulta 0.2000 638 ptr_3_Pan_c_ENSPTRG00000 0.2000 638 ggo_2,3_Gorilla_gorilla 0.3000 638 ppy_2,3_Pongo_ENSPPYG000 0.3000 638 mac_2,3_Macaque_ENSMMUG0 0.8000 638 caj_2,3_Callithrix_jacch 0.8000 638 mmu_s_Mus_musculus 1.0000 692 rno_s_Rattus_norvegicus 1.0000 693 str_s_Spermophilus_ENSST 1.0000 637 cpo_s1_Cavia_ENSCPOG0000 0.5000 659 cpo_s2_Cavia_ENSCPOG0000 0.5000 645 opr_s1_Ochotona_ENSOPRG0 0.5000 647 opr_s3_Ochotona_ENSOPRG0 0.5000 648 tbe_s_Tupaia_ENSTBEG0000 1.0000 684 bta_s_Bos_ENSBTAG0000002 1.0000 646 eca_s_14 1.0000 637 mlu_s_Myotis_scaffold_80 1.0000 656 fca_s_felCat3_184009:139 1.0000 639 sar_s_Sorex_ENSSARG00000 1.0000 649 Choloepus_s_TA_136829265 1.0000 660 hsa_n_Homo_ENST000004012 0.4000 651 ptr_n_Pan_ENSPTRG0000003 0.4000 651 ppy_n_Chr5 0.4000 651 mac_n_Macaca_ENSMMUG0000 0.8000 651 caj_n_Callithtrix_Contig 0.8000 650 cpo_n_Cavia_ENSCPOG00000 1.0000 652 tbe_n_Tupaia_ENSTBEG0000 1.0000 652 eca_n_Equus_Chr14 1.0000 648 mlu_n_Myotis_ENSMLUG0000 1.0000 651 fca_n_Felis_ENSFCAG00000 1.0000 649 caf_n_Canis_ENSCAFG00000 1.0000 648 oan_ne_Platypus_OANA5_Ul 1.0000 652 ******************************************************************************** ******************************************************************************** COMMAND LINE SUMMARY ******************************************************************************** This information can also be useful in the event you wish to report a problem with the MEME software. command: meme -dna -mod zoops -nmotifs 20 -evt 5 -maxw 20 /home/sonja/vaultRNAs/MAMMALIA-MEME-MOTIFS/Seqs/Mamm-fin.mfa model: mod= zoops nmotifs= 20 evt= 5 object function= E-value of product of p-values width: minw= 8 maxw= 20 minic= 0.00 width: wg= 11 ws= 1 endgaps= yes nsites: minsites= 2 maxsites= 40 wnsites= 0.8 theta: prob= 1 spmap= uni spfuzz= 0.5 em: prior= dirichlet b= 0.01 maxiter= 50 distance= 1e-05 data: n= 25993 N= 40 strands: + sample: seed= 0 seqfrac= 1 Letter frequencies in dataset: A 0.221 C 0.253 G 0.277 T 0.250 Background letter frequencies (from dataset with add-one prior applied): A 0.221 C 0.253 G 0.277 T 0.250 ******************************************************************************** ******************************************************************************** MOTIF 1 width = 20 sites = 39 llr = 924 E-value = 1.7e-247 ******************************************************************************** -------------------------------------------------------------------------------- Motif 1 Description -------------------------------------------------------------------------------- Simplified A ::::19:9:::::::::1:: pos.-specific C :1:a::::aaa:9:::7:a: probability G a:::91a::::a1aaa:9:: matrix T :9a:::::::::::::3::a bits 2.2 2.0 * * * * * ** 1.7 * ** ****** ** ** 1.5 **************** *** Information 1.3 **************** *** content 1.1 ******************** (34.2 bits) 0.9 ******************** 0.7 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel GTTCGAGACCCGCGGGCGCT consensus T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- caf_n_Canis_ENSCAFG00000 566 1.72e-12 CCTTGCGGGG GTTCGAGACCCGCGGGCGCT CCCTGACCCT mlu_n_Myotis_ENSMLUG0000 569 1.72e-12 CTACCTTAGG GTTCGAGACCCGCGGGCGCT CTCTGACCCT sar_s_Sorex_ENSSARG00000 567 1.72e-12 ATCCTTGATG GTTCGAGACCCGCGGGCGCT CTCCAGTCCT mlu_s_Myotis_scaffold_80 574 1.72e-12 AGCGACAGCG GTTCGAGACCCGCGGGCGCT CTCCAGCCCT bta_s_Bos_ENSBTAG0000002 564 1.72e-12 TCTGAGGGTG GTTCGAGACCCGCGGGCGCT CTCCAGTCCT cpo_s1_Cavia_ENSCPOG0000 577 1.72e-12 CGGTCCGGTG GTTCGAGACCCGCGGGCGCT CTCCAGTCCT str_s_Spermophilus_ENSST 555 1.72e-12 CATCTCGGTG GTTCGAGACCCGCGGGCGCT CACCAGTCCT rno_s_Rattus_norvegicus 611 1.72e-12 TGAGTGGTTG GTTCGAGACCCGCGGGCGCT CTCTGGCCCT mmu_s_Mus_musculus 610 1.72e-12 TGAGTGTTTG GTTCGAGACCCGCGGGCGCT CCCTGGCCCT hsa_3_Hs_AF045145_vaulta 556 1.72e-12 TCTCTGGGTT GTTCGAGACCCGCGGGCGCT CTCCAGCCCT caj_1_Callithrix_jacchus 569 1.72e-12 ACTCTGCGTG GTTCGAGACCCGCGGGCGCT CTCCGGCCTT mac_1_Macaque_ENSMMUG000 566 1.72e-12 TCTCTGGGTT GTTCGAGACCCGCGGGCGCT CTCCAGTCCT ggo_1_Gorilla_gorilla 566 1.72e-12 TGTCTGGGTT GTTCGAGACCCGCGGGCGCT CTCCAGTCCT ptr_1_Pan_a_ENSPTRG00000 566 1.72e-12 TGTCTGGGTT GTTCGAGACCCGCGGGCGCT CTCCAGTCCT hsa_1_Hs_AF045143_vaulta 566 1.72e-12 TGTCTGGGTT GTTCGAGACCCGCGGGCGCT CTCCAGTCCT fca_n_Felis_ENSFCAG00000 567 3.43e-12 TCTCGTTAGG GTTCGAGACCCGCGGGTGCT TTCTGACCCT tbe_n_Tupaia_ENSTBEG0000 570 3.43e-12 CTGTGCTGGG GTTCGAGACCCGCGGGTGCT TTCTGACCCT cpo_n_Cavia_ENSCPOG00000 570 3.43e-12 CTGCGCTGGG GTTCGAGACCCGCGGGTGCT TTCTGACCCT mac_n_Macaca_ENSMMUG0000 569 3.43e-12 CTGTGCTGGG GTTCGAGACCCGCGGGTGCT TACTGACCCT ppy_n_Chr5 569 3.43e-12 CTGTGCTGGG GTTCGAGACCCGCGGGTGCT TACTGACCCT ptr_n_Pan_ENSPTRG0000003 569 3.43e-12 CTGTGCTGGG GTTCGAGACCCGCGGGTGCT TACTGACCCT hsa_n_Homo_ENST000004012 569 3.43e-12 CTGTGCTGGG GTTCGAGACCCGCGGGTGCT TACTGACCCT ppy_2,3_Pongo_ENSPPYG000 556 3.43e-12 TCTCTGGGTG GTTCGAGACCCGCGGGTGCT TTCCAGCTCT ggo_2,3_Gorilla_gorilla 556 3.43e-12 TCTCTGGGTG GTTCGAGACCCGCGGGTGCT CTCCAGCTCT ptr_2_Pan_b_ENSPTRG00000 556 3.43e-12 TCTCTGGGTG GTTCGAGACCCGCGGGTGCT TTCCAGCTCT hsa_2_Hs_AF045144_vaulta 556 3.43e-12 TCTCTGGGTG GTTCGAGACCCGCGGGTGCT TTCCAGCTCT mac_2,3_Macaque_ENSMMUG0 556 6.18e-12 TCTCTGGGTT GTTCGAGACCCGCGGGCACT CTCCAGCCCT caj_2,3_Callithrix_jacch 556 1.01e-11 TCTCTAGGTT GTTCGGGACCCGCGGGCGCT CTCCAGCCCT ppy_1_Pongo_NSPPYG000000 565 1.20e-11 TCTCTCGGTT GTTCGAGACCCGGGGGCGCT CTCCAGTCCT ptr_3_Pan_c_ENSPTRG00000 556 1.97e-11 TCTCTGGGTG GTTCGAGACCCGTGGGCGCT CTCCATCTCT eca_n_Equus_Chr14 566 2.65e-11 CCCTTCCAGG GTTCGAGACCCGCGGGCGCC CTCTGACCCT opr_s3_Ochotona_ENSOPRG0 566 3.04e-11 CTCGTTGGTG GTTCGCGACCCGCGGGCGCT CTCCAGTCCT opr_s1_Ochotona_ENSOPRG0 565 3.04e-11 TAGATGAACA GTTCGCGACCCGCGGGCGCT CTCCAGTCCT cpo_s2_Cavia_ENSCPOG0000 563 4.83e-11 CTGGTCTGGT GTTTGAGACCCGCGGGCGCT CTCTGGTCCT tbe_s_Tupaia_ENSTBEG0000 603 1.17e-10 TGGGCGGGTG GCTCGAGTCCCGCGGGCGCT CTCCAGTCCT eca_s_14 561 1.59e-10 ACGCGAGGTG GTTCGAGACCCGGGGGCGTT CTCCAGTTTT Choloepus_s_TA_136829265 562 2.14e-10 TACAAGGGTG GCTCGAGATCCGCGGGTGCT CCCTAATCCT caj_n_Callithtrix_Contig 568 1.46e-09 CTGCGCTGGG GTTCAAGGCCCGTGGGTGCT TACTGACCTT fca_s_felCat3_184009:139 557 9.58e-09 TACTCAAGTG GTTCAGGACCTGCTGGTACT TTCTAGCCCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- caf_n_Canis_ENSCAFG00000 1.7e-12 565_[1]_63 mlu_n_Myotis_ENSMLUG0000 1.7e-12 568_[1]_63 sar_s_Sorex_ENSSARG00000 1.7e-12 566_[1]_63 mlu_s_Myotis_scaffold_80 1.7e-12 573_[1]_63 bta_s_Bos_ENSBTAG0000002 1.7e-12 563_[1]_63 cpo_s1_Cavia_ENSCPOG0000 1.7e-12 576_[1]_63 str_s_Spermophilus_ENSST 1.7e-12 554_[1]_63 rno_s_Rattus_norvegicus 1.7e-12 610_[1]_63 mmu_s_Mus_musculus 1.7e-12 609_[1]_63 hsa_3_Hs_AF045145_vaulta 1.7e-12 555_[1]_63 caj_1_Callithrix_jacchus 1.7e-12 568_[1]_62 mac_1_Macaque_ENSMMUG000 1.7e-12 565_[1]_65 ggo_1_Gorilla_gorilla 1.7e-12 565_[1]_63 ptr_1_Pan_a_ENSPTRG00000 1.7e-12 565_[1]_63 hsa_1_Hs_AF045143_vaulta 1.7e-12 565_[1]_63 fca_n_Felis_ENSFCAG00000 3.4e-12 566_[1]_63 tbe_n_Tupaia_ENSTBEG0000 3.4e-12 569_[1]_63 cpo_n_Cavia_ENSCPOG00000 3.4e-12 569_[1]_63 mac_n_Macaca_ENSMMUG0000 3.4e-12 568_[1]_63 ppy_n_Chr5 3.4e-12 568_[1]_63 ptr_n_Pan_ENSPTRG0000003 3.4e-12 568_[1]_63 hsa_n_Homo_ENST000004012 3.4e-12 568_[1]_63 ppy_2,3_Pongo_ENSPPYG000 3.4e-12 555_[1]_63 ggo_2,3_Gorilla_gorilla 3.4e-12 555_[1]_63 ptr_2_Pan_b_ENSPTRG00000 3.4e-12 555_[1]_63 hsa_2_Hs_AF045144_vaulta 3.4e-12 555_[1]_63 mac_2,3_Macaque_ENSMMUG0 6.2e-12 555_[1]_63 caj_2,3_Callithrix_jacch 1e-11 555_[1]_63 ppy_1_Pongo_NSPPYG000000 1.2e-11 564_[1]_63 ptr_3_Pan_c_ENSPTRG00000 2e-11 555_[1]_63 eca_n_Equus_Chr14 2.7e-11 565_[1]_63 opr_s3_Ochotona_ENSOPRG0 3e-11 565_[1]_63 opr_s1_Ochotona_ENSOPRG0 3e-11 564_[1]_63 cpo_s2_Cavia_ENSCPOG0000 4.8e-11 562_[1]_63 tbe_s_Tupaia_ENSTBEG0000 1.2e-10 602_[1]_62 eca_s_14 1.6e-10 560_[1]_57 Choloepus_s_TA_136829265 2.1e-10 561_[1]_79 caj_n_Callithtrix_Contig 1.5e-09 567_[1]_63 fca_s_felCat3_184009:139 9.6e-09 556_[1]_63 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 1 width=20 seqs=39 caf_n_Canis_ENSCAFG00000 ( 566) GTTCGAGACCCGCGGGCGCT 1 mlu_n_Myotis_ENSMLUG0000 ( 569) GTTCGAGACCCGCGGGCGCT 1 sar_s_Sorex_ENSSARG00000 ( 567) GTTCGAGACCCGCGGGCGCT 1 mlu_s_Myotis_scaffold_80 ( 574) GTTCGAGACCCGCGGGCGCT 1 bta_s_Bos_ENSBTAG0000002 ( 564) GTTCGAGACCCGCGGGCGCT 1 cpo_s1_Cavia_ENSCPOG0000 ( 577) GTTCGAGACCCGCGGGCGCT 0.5 str_s_Spermophilus_ENSST ( 555) GTTCGAGACCCGCGGGCGCT 1 rno_s_Rattus_norvegicus ( 611) GTTCGAGACCCGCGGGCGCT 1 mmu_s_Mus_musculus ( 610) GTTCGAGACCCGCGGGCGCT 1 hsa_3_Hs_AF045145_vaulta ( 556) GTTCGAGACCCGCGGGCGCT 0.2 caj_1_Callithrix_jacchus ( 569) GTTCGAGACCCGCGGGCGCT 0.5 mac_1_Macaque_ENSMMUG000 ( 566) GTTCGAGACCCGCGGGCGCT 0.5 ggo_1_Gorilla_gorilla ( 566) GTTCGAGACCCGCGGGCGCT 0.3 ptr_1_Pan_a_ENSPTRG00000 ( 566) GTTCGAGACCCGCGGGCGCT 0.3 hsa_1_Hs_AF045143_vaulta ( 566) GTTCGAGACCCGCGGGCGCT 0.3 fca_n_Felis_ENSFCAG00000 ( 567) GTTCGAGACCCGCGGGTGCT 1 tbe_n_Tupaia_ENSTBEG0000 ( 570) GTTCGAGACCCGCGGGTGCT 1 cpo_n_Cavia_ENSCPOG00000 ( 570) GTTCGAGACCCGCGGGTGCT 1 mac_n_Macaca_ENSMMUG0000 ( 569) GTTCGAGACCCGCGGGTGCT 0.8 ppy_n_Chr5 ( 569) GTTCGAGACCCGCGGGTGCT 0.4 ptr_n_Pan_ENSPTRG0000003 ( 569) GTTCGAGACCCGCGGGTGCT 0.4 hsa_n_Homo_ENST000004012 ( 569) GTTCGAGACCCGCGGGTGCT 0.4 ppy_2,3_Pongo_ENSPPYG000 ( 556) GTTCGAGACCCGCGGGTGCT 0.3 ggo_2,3_Gorilla_gorilla ( 556) GTTCGAGACCCGCGGGTGCT 0.3 ptr_2_Pan_b_ENSPTRG00000 ( 556) GTTCGAGACCCGCGGGTGCT 0.2 hsa_2_Hs_AF045144_vaulta ( 556) GTTCGAGACCCGCGGGTGCT 0.2 mac_2,3_Macaque_ENSMMUG0 ( 556) GTTCGAGACCCGCGGGCACT 0.8 caj_2,3_Callithrix_jacch ( 556) GTTCGGGACCCGCGGGCGCT 0.8 ppy_1_Pongo_NSPPYG000000 ( 565) GTTCGAGACCCGGGGGCGCT 0.3 ptr_3_Pan_c_ENSPTRG00000 ( 556) GTTCGAGACCCGTGGGCGCT 0.2 eca_n_Equus_Chr14 ( 566) GTTCGAGACCCGCGGGCGCC 1 opr_s3_Ochotona_ENSOPRG0 ( 566) GTTCGCGACCCGCGGGCGCT 0.5 opr_s1_Ochotona_ENSOPRG0 ( 565) GTTCGCGACCCGCGGGCGCT 0.5 cpo_s2_Cavia_ENSCPOG0000 ( 563) GTTTGAGACCCGCGGGCGCT 0.5 tbe_s_Tupaia_ENSTBEG0000 ( 603) GCTCGAGTCCCGCGGGCGCT 1 eca_s_14 ( 561) GTTCGAGACCCGGGGGCGTT 1 Choloepus_s_TA_136829265 ( 562) GCTCGAGATCCGCGGGTGCT 1 caj_n_Callithtrix_Contig ( 568) GTTCAAGGCCCGTGGGTGCT 0.8 fca_s_felCat3_184009:139 ( 557) GTTCAGGACCTGCTGGTACT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 16847 bayes= 9.09277 E= 1.7e-247 -1134 -1134 185 -1134 -1134 -172 -1134 189 -1134 -1134 -1134 200 -1134 196 -1134 -369 -167 -1134 175 -1134 201 -271 -200 -1134 -1134 -1134 185 -1134 207 -1134 -317 -269 -1134 193 -1134 -269 -1134 198 -1134 -1134 -1134 193 -1134 -269 -1134 -1134 185 -1134 -1134 185 -247 -269 -1134 -1134 180 -269 -1134 -1134 185 -1134 -1134 -1134 185 -1134 -1134 139 -1134 44 -167 -1134 175 -1134 -1134 193 -1134 -269 -1134 -271 -1134 195 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 1 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 39 E= 1.7e-247 0.000000 0.000000 1.000000 0.000000 0.000000 0.076923 0.000000 0.923077 0.000000 0.000000 0.000000 1.000000 0.000000 0.980769 0.000000 0.019231 0.069231 0.000000 0.930769 0.000000 0.892308 0.038462 0.069231 0.000000 0.000000 0.000000 1.000000 0.000000 0.930769 0.000000 0.030769 0.038462 0.000000 0.961538 0.000000 0.038462 0.000000 1.000000 0.000000 0.000000 0.000000 0.961538 0.000000 0.038462 0.000000 0.000000 1.000000 0.000000 0.000000 0.911538 0.050000 0.038462 0.000000 0.000000 0.961538 0.038462 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.661538 0.000000 0.338462 0.069231 0.000000 0.930769 0.000000 0.000000 0.961538 0.000000 0.038462 0.000000 0.038462 0.000000 0.961538 -------------------------------------------------------------------------------- Time 24.45 secs. ******************************************************************************** ******************************************************************************** MOTIF 2 width = 25 sites = 40 llr = 972 E-value = 5.5e-251 ******************************************************************************** -------------------------------------------------------------------------------- Motif 2 Description -------------------------------------------------------------------------------- Simplified A 1:::1::2:1:::a::::a3::::: pos.-specific C 67:::65::911:::a:a::63::: probability G ::9a9::8a:12::a::::737a3: matrix T 23:::45:::78a:::a:::1::7a bits 2.2 * 2.0 * ** ** * * * 1.7 * ******* * * 1.5 * ** ******* * * Information 1.3 ** *** ******* * * content 1.1 **** *** ********* **** (35.1 bits) 0.9 ******************* **** 0.7 ************************* 0.4 ************************* 0.2 ************************* 0.0 ------------------------- Multilevel CCGGGCCGGCTTTAGCTCAGCGGTT consensus TT TT AGC G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------------- str_s_Spermophilus_ENSST 498 3.72e-15 GTCCCGGCTC CCGGGCTGGCTTTAGCTCAGCGGTT CCTTCGCCAG caj_2,3_Callithrix_jacch 498 3.72e-15 GAAGCAGCTT CCGGGCTGGCTTTAGCTCAGCGGTT ACTTCGAGTA ggo_2,3_Gorilla_gorilla 498 3.72e-15 AAGATAACCT CCGGGCTGGCTTTAGCTCAGCGGTT ACTTCGAGTA ptr_2_Pan_b_ENSPTRG00000 498 3.72e-15 GACATAGCCT CCGGGCTGGCTTTAGCTCAGCGGTT ACTTCGAGTA caj_1_Callithrix_jacchus 499 3.72e-15 GAAGCAGCCT CCGGGCCGGCTTTAGCTCAGCGGTT ACTTCGACAA ggo_1_Gorilla_gorilla 498 3.72e-15 AAAGCAATCT CCGGGCTGGCTTTAGCTCAGCGGTT ACTTCGACAA hsa_1_Hs_AF045143_vaulta 498 3.72e-15 AAAGCAACCT CCGGGCTGGCTTTAGCTCAGCGGTT ACTTCGACAG mlu_s_Myotis_scaffold_80 499 2.57e-14 AGGGCCACGC CTGGGCTGGCTTTAGCTCAGCGGTT CCTTCGCATA opr_s1_Ochotona_ENSOPRG0 498 2.57e-14 ATCCCCACCG CTGGGCTGGCTTTAGCTCAGCGGTT CCTTCGTGTA mac_2,3_Macaque_ENSMMUG0 498 2.57e-14 GAAGCAGCCT CTGGGCTGGCTTTAGCTCAGCGGTT ACTTCGCAGT ppy_2,3_Pongo_ENSPPYG000 498 2.57e-14 GAGACAACCT CTGGGCTGGCTTTAGCTCAGCGGTT ACTTCGAGTG ptr_3_Pan_c_ENSPTRG00000 498 2.57e-14 AAAACAACCT CTGGGCTGGCTTTAGCTCAGCGGTT ACTTCGCGTG hsa_3_Hs_AF045145_vaulta 498 2.57e-14 AAAGCAACCT CTGGGCTGGCTTTAGCTCAGCGGTT ACTTCGCGTG hsa_2_Hs_AF045144_vaulta 498 2.57e-14 GAGATAGCCT CTGGGCTGGCTTTAGCTCAGCGGTT ACTTCGAGTA mac_1_Macaque_ENSMMUG000 498 2.57e-14 GAAACAACCT CTGGGCTGGCTTTAGCTCAGCGGTT ACTTCGGCGA ppy_1_Pongo_NSPPYG000000 498 2.57e-14 AAAGCAATCT CTGGGCTGGCTTTAGCTCAGCGGTT ACTTCGACCA ptr_1_Pan_a_ENSPTRG00000 498 2.57e-14 AAAGCAACCT CTGGGCTGGCTTTAGCTCAGCGGTT ACTTCGACAA tbe_s_Tupaia_ENSTBEG0000 498 1.38e-13 GAGCGAGCTT CCGGACTGGCTTTAGCTCAGCGGTT CCTTCGGCGA sar_s_Sorex_ENSSARG00000 498 2.18e-13 GGCTGTTCCT TTGGGCTGGCTTTAGCTCAGCGGTT ACTTCGTCAG rno_s_Rattus_norvegicus 498 4.85e-13 GAAGTGGTGG ACGGGCCAGCTTTAGCTCAGCGGTT ACTTCGACGT mmu_s_Mus_musculus 498 4.85e-13 GAAGAGATAG ACGGGCCAGCTTTAGCTCAGCGGTT ACTTCGACAG tbe_n_Tupaia_ENSTBEG0000 499 8.54e-13 ATACTTCCCT CCGGGTCGGCTTTAGCTCAAGCGGT TACTTCCTCA cpo_n_Cavia_ENSCPOG00000 499 8.54e-13 GGCCCTCTCT CCGGGTCGGCTTTAGCTCAAGCGGT TACTTCCTCA oan_ne_Platypus_OANA5_Ul 498 9.80e-13 AGGTTTCACT CCGGGCCGGCCGTAGCTCAGCGGTT ACTTCTGTCA cpo_s1_Cavia_ENSCPOG0000 498 1.67e-12 CATATATCTT GCGGGCTGGCTTTAGCTCAGCGGTT CCTTCGATCA fca_n_Felis_ENSFCAG00000 499 3.09e-12 AGCCAGGCGC TCGGGTCGGCTTTAGCTCAAGCGGT TACTTCGCAT bta_s_Bos_ENSBTAG0000002 498 3.42e-12 GGGAGTTTTT TCGGGCTGGCCGTAGCTCAGCGGTT CCTTCGACTA opr_s3_Ochotona_ENSOPRG0 498 5.04e-12 GAAGTAGTCT TTGGGCTGGCTCTAGCTCAGCGGTT CCTTCGTCTA cpo_s2_Cavia_ENSCPOG0000 498 5.46e-12 AGTCCGGCTT CTGGGCTGGCTTTATCTCAGCGGTT CCTTCGACTG eca_n_Equus_Chr14 499 1.63e-11 AGACCGCTTC ACGGGTCGGCTGTAGCTCAAGCGGT TACTTCGCAA mlu_n_Myotis_ENSMLUG0000 499 2.23e-11 AATTTGAACC TTGGGTCAGCTTTAGCTCAAGCGGT ATACTTCGGT mac_n_Macaca_ENSMMUG0000 499 3.22e-11 ACACTTCCAA CCGGGTCGGAGTTAGCTCAAGCGGT TACCTCCTCA ppy_n_Chr5 499 3.22e-11 ACACTCCTAC CCGGGTCGGAGTTAGCTCAAGCGGT TACCTCCTCA ptr_n_Pan_ENSPTRG0000003 499 3.22e-11 ACACTCCTAC CCGGGTCGGAGTTAGCTCAAGCGGT TACCTCCTCA hsa_n_Homo_ENST000004012 499 3.22e-11 ACACTCCTAC CCGGGTCGGAGTTAGCTCAAGCGGT TACCTCCTCA caf_n_Canis_ENSCAFG00000 499 6.37e-11 CCGGCCGCTC CCGGGTCAGCTTTAGCTCGAGCGGT TACTTCGCGA caj_n_Callithtrix_Contig 499 5.65e-10 ACACCCCTAT ACCGGTCGGAGTTAGCTCAAGCGGT ATCTCCTCAT Choloepus_s_TA_136829265 496 6.49e-10 GAACTTTGCT CCGGACAAGCCCTAGCTCAGTGGTT CCTTCAGCAA fca_s_felCat3_184009:139 498 1.62e-09 GAGGATGTGC CCAGATTGGCCGTAGCTGAGTGGTT TCTTCAAGTA eca_s_14 498 5.07e-09 ATCTAGAGAG TGTTCCCGGATGTAGCTCAGCGGTT CTTTCGACTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- str_s_Spermophilus_ENSST 3.7e-15 497_[2]_115 caj_2,3_Callithrix_jacch 3.7e-15 497_[2]_116 ggo_2,3_Gorilla_gorilla 3.7e-15 497_[2]_116 ptr_2_Pan_b_ENSPTRG00000 3.7e-15 497_[2]_116 caj_1_Callithrix_jacchus 3.7e-15 498_[2]_127 ggo_1_Gorilla_gorilla 3.7e-15 497_[2]_126 hsa_1_Hs_AF045143_vaulta 3.7e-15 497_[2]_126 mlu_s_Myotis_scaffold_80 2.6e-14 498_[2]_133 opr_s1_Ochotona_ENSOPRG0 2.6e-14 497_[2]_125 mac_2,3_Macaque_ENSMMUG0 2.6e-14 497_[2]_116 ppy_2,3_Pongo_ENSPPYG000 2.6e-14 497_[2]_116 ptr_3_Pan_c_ENSPTRG00000 2.6e-14 497_[2]_116 hsa_3_Hs_AF045145_vaulta 2.6e-14 497_[2]_116 hsa_2_Hs_AF045144_vaulta 2.6e-14 497_[2]_116 mac_1_Macaque_ENSMMUG000 2.6e-14 497_[2]_128 ppy_1_Pongo_NSPPYG000000 2.6e-14 497_[2]_125 ptr_1_Pan_a_ENSPTRG00000 2.6e-14 497_[2]_126 tbe_s_Tupaia_ENSTBEG0000 1.4e-13 497_[2]_162 sar_s_Sorex_ENSSARG00000 2.2e-13 497_[2]_127 rno_s_Rattus_norvegicus 4.8e-13 497_[2]_171 mmu_s_Mus_musculus 4.8e-13 497_[2]_170 tbe_n_Tupaia_ENSTBEG0000 8.5e-13 498_[2]_129 cpo_n_Cavia_ENSCPOG00000 8.5e-13 498_[2]_129 oan_ne_Platypus_OANA5_Ul 9.8e-13 497_[2]_130 cpo_s1_Cavia_ENSCPOG0000 1.7e-12 497_[2]_137 fca_n_Felis_ENSFCAG00000 3.1e-12 498_[2]_126 bta_s_Bos_ENSBTAG0000002 3.4e-12 497_[2]_124 opr_s3_Ochotona_ENSOPRG0 5e-12 497_[2]_126 cpo_s2_Cavia_ENSCPOG0000 5.5e-12 497_[2]_123 eca_n_Equus_Chr14 1.6e-11 498_[2]_125 mlu_n_Myotis_ENSMLUG0000 2.2e-11 498_[2]_128 mac_n_Macaca_ENSMMUG0000 3.2e-11 498_[2]_128 ppy_n_Chr5 3.2e-11 498_[2]_128 ptr_n_Pan_ENSPTRG0000003 3.2e-11 498_[2]_128 hsa_n_Homo_ENST000004012 3.2e-11 498_[2]_128 caf_n_Canis_ENSCAFG00000 6.4e-11 498_[2]_125 caj_n_Callithtrix_Contig 5.7e-10 498_[2]_127 Choloepus_s_TA_136829265 6.5e-10 495_[2]_140 fca_s_felCat3_184009:139 1.6e-09 497_[2]_117 eca_s_14 5.1e-09 497_[2]_115 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 2 width=25 seqs=40 str_s_Spermophilus_ENSST ( 498) CCGGGCTGGCTTTAGCTCAGCGGTT 1 caj_2,3_Callithrix_jacch ( 498) CCGGGCTGGCTTTAGCTCAGCGGTT 0.8 ggo_2,3_Gorilla_gorilla ( 498) CCGGGCTGGCTTTAGCTCAGCGGTT 0.3 ptr_2_Pan_b_ENSPTRG00000 ( 498) CCGGGCTGGCTTTAGCTCAGCGGTT 0.2 caj_1_Callithrix_jacchus ( 499) CCGGGCCGGCTTTAGCTCAGCGGTT 0.5 ggo_1_Gorilla_gorilla ( 498) CCGGGCTGGCTTTAGCTCAGCGGTT 0.3 hsa_1_Hs_AF045143_vaulta ( 498) CCGGGCTGGCTTTAGCTCAGCGGTT 0.3 mlu_s_Myotis_scaffold_80 ( 499) CTGGGCTGGCTTTAGCTCAGCGGTT 1 opr_s1_Ochotona_ENSOPRG0 ( 498) CTGGGCTGGCTTTAGCTCAGCGGTT 0.5 mac_2,3_Macaque_ENSMMUG0 ( 498) CTGGGCTGGCTTTAGCTCAGCGGTT 0.8 ppy_2,3_Pongo_ENSPPYG000 ( 498) CTGGGCTGGCTTTAGCTCAGCGGTT 0.3 ptr_3_Pan_c_ENSPTRG00000 ( 498) CTGGGCTGGCTTTAGCTCAGCGGTT 0.2 hsa_3_Hs_AF045145_vaulta ( 498) CTGGGCTGGCTTTAGCTCAGCGGTT 0.2 hsa_2_Hs_AF045144_vaulta ( 498) CTGGGCTGGCTTTAGCTCAGCGGTT 0.2 mac_1_Macaque_ENSMMUG000 ( 498) CTGGGCTGGCTTTAGCTCAGCGGTT 0.5 ppy_1_Pongo_NSPPYG000000 ( 498) CTGGGCTGGCTTTAGCTCAGCGGTT 0.3 ptr_1_Pan_a_ENSPTRG00000 ( 498) CTGGGCTGGCTTTAGCTCAGCGGTT 0.3 tbe_s_Tupaia_ENSTBEG0000 ( 498) CCGGACTGGCTTTAGCTCAGCGGTT 1 sar_s_Sorex_ENSSARG00000 ( 498) TTGGGCTGGCTTTAGCTCAGCGGTT 1 rno_s_Rattus_norvegicus ( 498) ACGGGCCAGCTTTAGCTCAGCGGTT 1 mmu_s_Mus_musculus ( 498) ACGGGCCAGCTTTAGCTCAGCGGTT 1 tbe_n_Tupaia_ENSTBEG0000 ( 499) CCGGGTCGGCTTTAGCTCAAGCGGT 1 cpo_n_Cavia_ENSCPOG00000 ( 499) CCGGGTCGGCTTTAGCTCAAGCGGT 1 oan_ne_Platypus_OANA5_Ul ( 498) CCGGGCCGGCCGTAGCTCAGCGGTT 1 cpo_s1_Cavia_ENSCPOG0000 ( 498) GCGGGCTGGCTTTAGCTCAGCGGTT 0.5 fca_n_Felis_ENSFCAG00000 ( 499) TCGGGTCGGCTTTAGCTCAAGCGGT 1 bta_s_Bos_ENSBTAG0000002 ( 498) TCGGGCTGGCCGTAGCTCAGCGGTT 1 opr_s3_Ochotona_ENSOPRG0 ( 498) TTGGGCTGGCTCTAGCTCAGCGGTT 0.5 cpo_s2_Cavia_ENSCPOG0000 ( 498) CTGGGCTGGCTTTATCTCAGCGGTT 0.5 eca_n_Equus_Chr14 ( 499) ACGGGTCGGCTGTAGCTCAAGCGGT 1 mlu_n_Myotis_ENSMLUG0000 ( 499) TTGGGTCAGCTTTAGCTCAAGCGGT 1 mac_n_Macaca_ENSMMUG0000 ( 499) CCGGGTCGGAGTTAGCTCAAGCGGT 0.8 ppy_n_Chr5 ( 499) CCGGGTCGGAGTTAGCTCAAGCGGT 0.4 ptr_n_Pan_ENSPTRG0000003 ( 499) CCGGGTCGGAGTTAGCTCAAGCGGT 0.4 hsa_n_Homo_ENST000004012 ( 499) CCGGGTCGGAGTTAGCTCAAGCGGT 0.4 caf_n_Canis_ENSCAFG00000 ( 499) CCGGGTCAGCTTTAGCTCGAGCGGT 1 caj_n_Callithtrix_Contig ( 499) ACCGGTCGGAGTTAGCTCAAGCGGT 0.8 Choloepus_s_TA_136829265 ( 496) CCGGACAAGCCCTAGCTCAGTGGTT 1 fca_s_felCat3_184009:139 ( 498) CCAGATTGGCCGTAGCTGAGTGGTT 1 eca_s_14 ( 498) TGTTCCCGGATGTAGCTCAGCGGTT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 25 n= 16647 bayes= 9.06616 E= 5.5e-251 -65 133 -389 -29 -1140 145 -290 12 -257 -309 169 -275 -1140 -1140 180 -275 -99 -277 162 -1140 -1140 133 -1140 54 -257 96 -1140 91 -25 -1140 156 -1140 -1140 -1140 185 -1140 -65 176 -1140 -1140 -1140 -77 -142 158 -1140 -218 -58 161 -1140 -1140 -1140 200 218 -1140 -1140 -1140 -1140 -1140 183 -375 -1140 198 -1140 -1140 -1140 -1140 -1140 200 -1140 193 -290 -1140 212 -1140 -290 -1140 56 -1140 128 -1140 -1140 125 24 -175 -1140 37 128 -1140 -1140 -1140 185 -1140 -1140 -1140 24 143 -1140 -1140 -1140 200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 2 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 25 nsites= 40 E= 5.5e-251 0.140741 0.637037 0.018519 0.203704 0.000000 0.692593 0.037037 0.270370 0.037037 0.029630 0.896296 0.037037 0.000000 0.000000 0.962963 0.037037 0.111111 0.037037 0.851852 0.000000 0.000000 0.637037 0.000000 0.362963 0.037037 0.492593 0.000000 0.470370 0.185185 0.000000 0.814815 0.000000 0.000000 0.000000 1.000000 0.000000 0.140741 0.859259 0.000000 0.000000 0.000000 0.148148 0.103704 0.748148 0.000000 0.055556 0.185185 0.759259 0.000000 0.000000 0.000000 1.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.981481 0.018519 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.962963 0.037037 0.000000 0.962963 0.000000 0.037037 0.000000 0.325926 0.000000 0.674074 0.000000 0.000000 0.600000 0.325926 0.074074 0.000000 0.325926 0.674074 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.325926 0.674074 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- Time 49.72 secs. ******************************************************************************** ******************************************************************************** MOTIF 3 width = 15 sites = 28 llr = 415 E-value = 1.4e-060 ******************************************************************************** -------------------------------------------------------------------------------- Motif 3 Description -------------------------------------------------------------------------------- Simplified A :1::54:::::::2: pos.-specific C 71a5::6aa:::::6 probability G ::::56:::::::61 matrix T 38:5::4::aaaa24 bits 2.2 2.0 * ****** 1.7 * ****** 1.5 * ****** Information 1.3 * ****** content 1.1 ************* (21.4 bits) 0.9 ************* 0.7 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel CTCTAGCCCTTTTGC consensus T CGAT AT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- mlu_s_Myotis_scaffold_80 594 2.15e-09 CGCGGGCGCT CTCCAGCCCTTTTGC TGCTGTCTCA rno_s_Rattus_norvegicus 631 3.48e-09 CGCGGGCGCT CTCTGGCCCTTTTGC TTGCTGCGAA sar_s_Sorex_ENSSARG00000 587 1.08e-08 CGCGGGCGCT CTCCAGTCCTTTTGC CAACTTTGGT bta_s_Bos_ENSBTAG0000002 584 1.08e-08 CGCGGGCGCT CTCCAGTCCTTTTGC CGCTGTCCCA opr_s3_Ochotona_ENSOPRG0 586 1.08e-08 CGCGGGCGCT CTCCAGTCCTTTTGC CCTGGATCCT cpo_s1_Cavia_ENSCPOG0000 597 1.08e-08 CGCGGGCGCT CTCCAGTCCTTTTGC TCCTGCTCCG caj_2,3_Callithrix_jacch 576 2.54e-08 CGCGGGCGCT CTCCAGCCCTTTTAC TGCTGAAGTT mac_2,3_Macaque_ENSMMUG0 576 2.54e-08 CGCGGGCACT CTCCAGCCCTTTTAC TGCTGAAGTT eca_n_Equus_Chr14 586 2.99e-08 CGCGGGCGCC CTCTGACCCTTTTGT GCCAGACTGC fca_s_felCat3_184009:139 577 2.99e-08 TGCTGGTACT TTCTAGCCCTTTTGC CACTGCCCCA cpo_s2_Cavia_ENSCPOG0000 583 2.99e-08 CGCGGGCGCT CTCTGGTCCTTTTGT TCTTGCCACC ppy_1_Pongo_NSPPYG000000 585 4.52e-08 CGGGGGCGCT CTCCAGTCCTTTTAC CTCTCTGGGC ggo_1_Gorilla_gorilla 586 4.52e-08 CGCGGGCGCT CTCCAGTCCTTTTAC CTCTCTGGGC ptr_1_Pan_a_ENSPTRG00000 586 4.52e-08 CGCGGGCGCT CTCCAGTCCTTTTAC CTCTCTGGGC hsa_1_Hs_AF045143_vaulta 586 4.52e-08 CGCGGGCGCT CTCCAGTCCTTTTAC CTCTCTGGGC fca_n_Felis_ENSFCAG00000 587 1.13e-07 CGCGGGTGCT TTCTGACCCTTTTGT CCTCAAATTC tbe_n_Tupaia_ENSTBEG0000 590 1.13e-07 CGCGGGTGCT TTCTGACCCTTTTGT GCACCGTTCT cpo_n_Cavia_ENSCPOG00000 590 1.13e-07 CGCGGGTGCT TTCTGACCCTTTTGT GCAACTTTCG mmu_s_Mus_musculus 630 1.13e-07 CGCGGGCGCT CCCTGGCCCTTTTGC CGCTGCGAAT mac_1_Macaque_ENSMMUG000 586 1.28e-07 CGCGGGCGCT CTCCAGTCCTTTTTT ACCTCTCTGG str_s_Spermophilus_ENSST 575 1.94e-07 CGCGGGCGCT CACCAGTCCTTTTGC TGCAACCTCA caf_n_Canis_ENSCAFG00000 586 2.16e-07 CGCGGGCGCT CCCTGACCCTTTTGT CCTCCGAGCT Choloepus_s_TA_136829265 582 3.19e-07 CGCGGGTGCT CCCTAATCCTTTTAC TACCGCTCGC oan_ne_Platypus_OANA5_Ul 588 3.41e-07 CGCGGGCGCT TTCCGGTCCTTTTTT GCCCCGGGGG tbe_s_Tupaia_ENSTBEG0000 623 3.82e-07 CGCGGGCGCT CTCCAGTCCTTTTTG CTTCTGCCTG mlu_n_Myotis_ENSMLUG0000 589 4.24e-07 CGCGGGCGCT CTCTGACCCTTTTTG TTCTGGACTC mac_n_Macaca_ENSMMUG0000 589 6.68e-07 CGCGGGTGCT TACTGACCCTTTTAT GCACTAAATT ggo_2,3_Gorilla_gorilla 576 7.27e-07 CGCGGGTGCT CTCCAGCTCTTTTAC TGCTGAAGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- mlu_s_Myotis_scaffold_80 2.1e-09 593_[3]_48 rno_s_Rattus_norvegicus 3.5e-09 630_[3]_48 sar_s_Sorex_ENSSARG00000 1.1e-08 586_[3]_48 bta_s_Bos_ENSBTAG0000002 1.1e-08 583_[3]_48 opr_s3_Ochotona_ENSOPRG0 1.1e-08 585_[3]_48 cpo_s1_Cavia_ENSCPOG0000 1.1e-08 596_[3]_48 caj_2,3_Callithrix_jacch 2.5e-08 575_[3]_48 mac_2,3_Macaque_ENSMMUG0 2.5e-08 575_[3]_48 eca_n_Equus_Chr14 3e-08 585_[3]_48 fca_s_felCat3_184009:139 3e-08 576_[3]_48 cpo_s2_Cavia_ENSCPOG0000 3e-08 582_[3]_48 ppy_1_Pongo_NSPPYG000000 4.5e-08 584_[3]_48 ggo_1_Gorilla_gorilla 4.5e-08 585_[3]_48 ptr_1_Pan_a_ENSPTRG00000 4.5e-08 585_[3]_48 hsa_1_Hs_AF045143_vaulta 4.5e-08 585_[3]_48 fca_n_Felis_ENSFCAG00000 1.1e-07 586_[3]_48 tbe_n_Tupaia_ENSTBEG0000 1.1e-07 589_[3]_48 cpo_n_Cavia_ENSCPOG00000 1.1e-07 589_[3]_48 mmu_s_Mus_musculus 1.1e-07 629_[3]_48 mac_1_Macaque_ENSMMUG000 1.3e-07 585_[3]_50 str_s_Spermophilus_ENSST 1.9e-07 574_[3]_48 caf_n_Canis_ENSCAFG00000 2.2e-07 585_[3]_48 Choloepus_s_TA_136829265 3.2e-07 581_[3]_64 oan_ne_Platypus_OANA5_Ul 3.4e-07 587_[3]_50 tbe_s_Tupaia_ENSTBEG0000 3.8e-07 622_[3]_47 mlu_n_Myotis_ENSMLUG0000 4.2e-07 588_[3]_48 mac_n_Macaca_ENSMMUG0000 6.7e-07 588_[3]_48 ggo_2,3_Gorilla_gorilla 7.3e-07 575_[3]_48 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 3 width=15 seqs=28 mlu_s_Myotis_scaffold_80 ( 594) CTCCAGCCCTTTTGC 1 rno_s_Rattus_norvegicus ( 631) CTCTGGCCCTTTTGC 1 sar_s_Sorex_ENSSARG00000 ( 587) CTCCAGTCCTTTTGC 1 bta_s_Bos_ENSBTAG0000002 ( 584) CTCCAGTCCTTTTGC 1 opr_s3_Ochotona_ENSOPRG0 ( 586) CTCCAGTCCTTTTGC 0.5 cpo_s1_Cavia_ENSCPOG0000 ( 597) CTCCAGTCCTTTTGC 0.5 caj_2,3_Callithrix_jacch ( 576) CTCCAGCCCTTTTAC 0.8 mac_2,3_Macaque_ENSMMUG0 ( 576) CTCCAGCCCTTTTAC 0.8 eca_n_Equus_Chr14 ( 586) CTCTGACCCTTTTGT 1 fca_s_felCat3_184009:139 ( 577) TTCTAGCCCTTTTGC 1 cpo_s2_Cavia_ENSCPOG0000 ( 583) CTCTGGTCCTTTTGT 0.5 ppy_1_Pongo_NSPPYG000000 ( 585) CTCCAGTCCTTTTAC 0.3 ggo_1_Gorilla_gorilla ( 586) CTCCAGTCCTTTTAC 0.3 ptr_1_Pan_a_ENSPTRG00000 ( 586) CTCCAGTCCTTTTAC 0.3 hsa_1_Hs_AF045143_vaulta ( 586) CTCCAGTCCTTTTAC 0.3 fca_n_Felis_ENSFCAG00000 ( 587) TTCTGACCCTTTTGT 1 tbe_n_Tupaia_ENSTBEG0000 ( 590) TTCTGACCCTTTTGT 1 cpo_n_Cavia_ENSCPOG00000 ( 590) TTCTGACCCTTTTGT 1 mmu_s_Mus_musculus ( 630) CCCTGGCCCTTTTGC 1 mac_1_Macaque_ENSMMUG000 ( 586) CTCCAGTCCTTTTTT 0.5 str_s_Spermophilus_ENSST ( 575) CACCAGTCCTTTTGC 1 caf_n_Canis_ENSCAFG00000 ( 586) CCCTGACCCTTTTGT 1 Choloepus_s_TA_136829265 ( 582) CCCTAATCCTTTTAC 1 oan_ne_Platypus_OANA5_Ul ( 588) TTCCGGTCCTTTTTT 1 tbe_s_Tupaia_ENSTBEG0000 ( 623) CTCCAGTCCTTTTTG 1 mlu_n_Myotis_ENSMLUG0000 ( 589) CTCTGACCCTTTTTG 1 mac_n_Macaca_ENSMMUG0000 ( 589) TACTGACCCTTTTAT 0.8 ggo_2,3_Gorilla_gorilla ( 576) CTCCAGCTCTTTTAC 0.3 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 17047 bayes= 9.95319 E= 1.4e-060 -1110 154 -1110 9 -142 -88 -1110 165 -1110 198 -1110 -1110 -1110 94 -1110 105 126 -1110 76 -1110 69 -1110 122 -1110 -1110 120 -1110 75 -1110 196 -1110 -418 -1110 198 -1110 -1110 -1110 -1110 -1110 200 -1110 -1110 -1110 200 -1110 -1110 -1110 200 -1110 -1110 -1110 200 2 -1110 115 -64 -1110 113 -160 51 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 3 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 28 E= 1.4e-060 0.000000 0.735160 0.000000 0.264840 0.082192 0.136986 0.000000 0.780822 0.000000 1.000000 0.000000 0.000000 0.000000 0.484018 0.000000 0.515982 0.529680 0.000000 0.470320 0.000000 0.356164 0.000000 0.643836 0.000000 0.000000 0.579909 0.000000 0.420091 0.000000 0.986301 0.000000 0.013699 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.223744 0.000000 0.616438 0.159817 0.000000 0.552511 0.091324 0.356164 -------------------------------------------------------------------------------- Time 72.82 secs. ******************************************************************************** ******************************************************************************** MOTIF 4 width = 20 sites = 34 llr = 555 E-value = 6.7e-093 ******************************************************************************** -------------------------------------------------------------------------------- Motif 4 Description -------------------------------------------------------------------------------- Simplified A 13::a:1:911::::::::5 pos.-specific C 1::::a:5:::3815:816: probability G 16:a::9::78::1::1344 matrix T 6:a::::5:2:7185915:1 bits 2.2 * 2.0 *** 1.7 **** 1.5 ***** * * Information 1.3 ***** * * ** content 1.1 ******* ** *** (23.6 bits) 0.9 ******** ******* 0.7 **************** ** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel TGTGACGCAGGTCTTTCTCA consensus A T C C GGG sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- caj_2,3_Callithrix_jacch 446 2.16e-12 ACTCATTCTT TGTGACGTAGGTCTTTCTCA CCAGTCAAGA mac_2,3_Macaque_ENSMMUG0 446 2.16e-12 ACTCACTCTT TGTGACGTAGGTCTTTCTCA CCAGTCAAGA ppy_2,3_Pongo_ENSPPYG000 446 2.16e-12 TGACTCACTT TGTGACGTAGGTCTTTCTCA CCAGTCAAGA ggo_2,3_Gorilla_gorilla 446 2.16e-12 TGACTCACTT TGTGACGTAGGTCTTTCTCA CCAGTCAAGA ptr_3_Pan_c_ENSPTRG00000 446 2.16e-12 ACTCACTCTT TGTGACGTAGGTCTTTCTCA CCAGTCAAGA hsa_3_Hs_AF045145_vaulta 446 2.16e-12 ACTCACTCTT TGTGACGTAGGTCTTTCTCA CCAGTCAAGA ptr_2_Pan_b_ENSPTRG00000 446 2.16e-12 TGACTCACTT TGTGACGTAGGTCTTTCTCA CCAGTCAAGA hsa_2_Hs_AF045144_vaulta 446 2.16e-12 TGACTCACTT TGTGACGTAGGTCTTTCTCA CCAGTCAAGA mac_1_Macaque_ENSMMUG000 446 2.16e-12 ACTCACGCTT TGTGACGTAGGTCTTTCTCA CCAGTCAAGA ggo_1_Gorilla_gorilla 446 2.16e-12 ACTCACTCTT TGTGACGTAGGTCTTTCTCA CCAGTCAAGA ptr_1_Pan_a_ENSPTRG00000 446 2.16e-12 ACTCACTCTT TGTGACGTAGGTCTTTCTCA CCAGTCAATA hsa_1_Hs_AF045143_vaulta 446 2.16e-12 ACTCACTCTT TGTGACGTAGGTCTTTCTCA CCAGTCAATA caj_1_Callithrix_jacchus 447 1.36e-11 ACTCACTCTT TGTGACGCAGGTCTTTCTCG CCAGTCAAGA ppy_1_Pongo_NSPPYG000000 446 1.36e-11 ACTCACTCTT TGTGACGTAGGTCTTTCTCG CCAGTCAAGA tbe_s_Tupaia_ENSTBEG0000 446 4.99e-11 CATTAACTTT TGTGACGTATGTCTTTCTCA CCAGTCAAGA str_s_Spermophilus_ENSST 446 1.24e-10 ATTCACTCTT TGTGACGCAGGTCTTTCCCA ACAGTCAGAT rno_s_Rattus_norvegicus 447 1.13e-09 AAAGTATTCG TATGACGTAGGTTTCTCGCA CAGTCAAGTA tbe_n_Tupaia_ENSTBEG0000 404 3.77e-09 GGCGGGACCG GGTGACGCAGGCCTCTCGGG GGCGGGAACA caj_n_Callithtrix_Contig 400 3.77e-09 GGCGGGACCA CGTGACGCAGGCCTCTCGGG GGTGGGGAAC ppy_n_Chr5 400 6.36e-09 GACGAGACCG CATGACGCAGGCCTCTCGGG GGCGGGGAAC ptr_n_Pan_ENSPTRG0000003 400 6.36e-09 GGCGAGACCG CATGACGCAGGCCTCTCGGG GGCGGGGAGC hsa_n_Homo_ENST000004012 400 6.36e-09 GGCGAGACCG CATGACGCAGGCCTCTCGGG GGCGGGGAGC eca_s_14 451 7.00e-09 GTTGACTTAT TGCGACGTATGTCTTTCTCG CCAGTCGTGG mmu_s_Mus_musculus 447 1.13e-08 AAAACATCCA AATGACGTATGTTTCTCTCA CAGTCATGTA opr_s3_Ochotona_ENSOPRG0 446 1.93e-08 CCCAGCTGCC TGTGACGCAGGTCTCTGGGT GCAGTCAAAG mac_n_Macaca_ENSMMUG0000 400 6.02e-08 GGCGGGACCG CATGACGCAGGCCTCTTGGG GGCGGGGAGC eca_n_Equus_Chr14 403 8.10e-08 GGCGGGACCC GGTGACGCAGACCGCTCGGA GGCGTGGACT cpo_s2_Cavia_ENSCPOG0000 446 1.43e-07 TGACGCAGTT TGTGACACAGGTTCTTCTCT CTCGTCAAGA mlu_s_Myotis_scaffold_80 447 2.42e-07 NNNNNNNNNT TATGACGTATTTCCTTCTTA ACAGTGAAAT bta_s_Bos_ENSBTAG0000002 446 3.73e-07 ATTGGTTCAT TATGACGCAACTCTTGCTCT GCAGTCAAGA mlu_n_Myotis_ENSMLUG0000 411 9.63e-07 GGGCGGGACC TGTGACGCAAATAGCTCAGA GGCGTGGAGC sar_s_Sorex_ENSSARG00000 447 1.01e-06 TGTGATTCAT AGTGACGTAAGTCCTCTTGG CAGTAAAATA caf_n_Canis_ENSCAFG00000 482 2.00e-06 TAGAAGCTGA AATGACACCGGCCGCTCCCG GGTCAGCTTT cpo_n_Cavia_ENSCPOG00000 406 2.19e-06 GGACGGGCCA GCTGACGCGGGCCTCTGGGG CGGGGAAGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- caj_2,3_Callithrix_jacch 2.2e-12 445_[4]_173 mac_2,3_Macaque_ENSMMUG0 2.2e-12 445_[4]_173 ppy_2,3_Pongo_ENSPPYG000 2.2e-12 445_[4]_173 ggo_2,3_Gorilla_gorilla 2.2e-12 445_[4]_173 ptr_3_Pan_c_ENSPTRG00000 2.2e-12 445_[4]_173 hsa_3_Hs_AF045145_vaulta 2.2e-12 445_[4]_173 ptr_2_Pan_b_ENSPTRG00000 2.2e-12 445_[4]_173 hsa_2_Hs_AF045144_vaulta 2.2e-12 445_[4]_173 mac_1_Macaque_ENSMMUG000 2.2e-12 445_[4]_185 ggo_1_Gorilla_gorilla 2.2e-12 445_[4]_183 ptr_1_Pan_a_ENSPTRG00000 2.2e-12 445_[4]_183 hsa_1_Hs_AF045143_vaulta 2.2e-12 445_[4]_183 caj_1_Callithrix_jacchus 1.4e-11 446_[4]_184 ppy_1_Pongo_NSPPYG000000 1.4e-11 445_[4]_182 tbe_s_Tupaia_ENSTBEG0000 5e-11 445_[4]_219 str_s_Spermophilus_ENSST 1.2e-10 445_[4]_172 rno_s_Rattus_norvegicus 1.1e-09 446_[4]_227 tbe_n_Tupaia_ENSTBEG0000 3.8e-09 403_[4]_229 caj_n_Callithtrix_Contig 3.8e-09 399_[4]_231 ppy_n_Chr5 6.4e-09 399_[4]_232 ptr_n_Pan_ENSPTRG0000003 6.4e-09 399_[4]_232 hsa_n_Homo_ENST000004012 6.4e-09 399_[4]_232 eca_s_14 7e-09 450_[4]_167 mmu_s_Mus_musculus 1.1e-08 446_[4]_226 opr_s3_Ochotona_ENSOPRG0 1.9e-08 445_[4]_183 mac_n_Macaca_ENSMMUG0000 6e-08 399_[4]_232 eca_n_Equus_Chr14 8.1e-08 402_[4]_226 cpo_s2_Cavia_ENSCPOG0000 1.4e-07 445_[4]_180 mlu_s_Myotis_scaffold_80 2.4e-07 446_[4]_190 bta_s_Bos_ENSBTAG0000002 3.7e-07 445_[4]_181 mlu_n_Myotis_ENSMLUG0000 9.6e-07 410_[4]_221 sar_s_Sorex_ENSSARG00000 1e-06 446_[4]_183 caf_n_Canis_ENSCAFG00000 2e-06 481_[4]_147 cpo_n_Cavia_ENSCPOG00000 2.2e-06 405_[4]_227 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 4 width=20 seqs=34 caj_2,3_Callithrix_jacch ( 446) TGTGACGTAGGTCTTTCTCA 0.8 mac_2,3_Macaque_ENSMMUG0 ( 446) TGTGACGTAGGTCTTTCTCA 0.8 ppy_2,3_Pongo_ENSPPYG000 ( 446) TGTGACGTAGGTCTTTCTCA 0.3 ggo_2,3_Gorilla_gorilla ( 446) TGTGACGTAGGTCTTTCTCA 0.3 ptr_3_Pan_c_ENSPTRG00000 ( 446) TGTGACGTAGGTCTTTCTCA 0.2 hsa_3_Hs_AF045145_vaulta ( 446) TGTGACGTAGGTCTTTCTCA 0.2 ptr_2_Pan_b_ENSPTRG00000 ( 446) TGTGACGTAGGTCTTTCTCA 0.2 hsa_2_Hs_AF045144_vaulta ( 446) TGTGACGTAGGTCTTTCTCA 0.2 mac_1_Macaque_ENSMMUG000 ( 446) TGTGACGTAGGTCTTTCTCA 0.5 ggo_1_Gorilla_gorilla ( 446) TGTGACGTAGGTCTTTCTCA 0.3 ptr_1_Pan_a_ENSPTRG00000 ( 446) TGTGACGTAGGTCTTTCTCA 0.3 hsa_1_Hs_AF045143_vaulta ( 446) TGTGACGTAGGTCTTTCTCA 0.3 caj_1_Callithrix_jacchus ( 447) TGTGACGCAGGTCTTTCTCG 0.5 ppy_1_Pongo_NSPPYG000000 ( 446) TGTGACGTAGGTCTTTCTCG 0.3 tbe_s_Tupaia_ENSTBEG0000 ( 446) TGTGACGTATGTCTTTCTCA 1 str_s_Spermophilus_ENSST ( 446) TGTGACGCAGGTCTTTCCCA 1 rno_s_Rattus_norvegicus ( 447) TATGACGTAGGTTTCTCGCA 1 tbe_n_Tupaia_ENSTBEG0000 ( 404) GGTGACGCAGGCCTCTCGGG 1 caj_n_Callithtrix_Contig ( 400) CGTGACGCAGGCCTCTCGGG 0.8 ppy_n_Chr5 ( 400) CATGACGCAGGCCTCTCGGG 0.4 ptr_n_Pan_ENSPTRG0000003 ( 400) CATGACGCAGGCCTCTCGGG 0.4 hsa_n_Homo_ENST000004012 ( 400) CATGACGCAGGCCTCTCGGG 0.4 eca_s_14 ( 451) TGCGACGTATGTCTTTCTCG 1 mmu_s_Mus_musculus ( 447) AATGACGTATGTTTCTCTCA 1 opr_s3_Ochotona_ENSOPRG0 ( 446) TGTGACGCAGGTCTCTGGGT 0.5 mac_n_Macaca_ENSMMUG0000 ( 400) CATGACGCAGGCCTCTTGGG 0.8 eca_n_Equus_Chr14 ( 403) GGTGACGCAGACCGCTCGGA 1 cpo_s2_Cavia_ENSCPOG0000 ( 446) TGTGACACAGGTTCTTCTCT 0.5 mlu_s_Myotis_scaffold_80 ( 447) TATGACGTATTTCCTTCTTA 1 bta_s_Bos_ENSBTAG0000002 ( 446) TATGACGCAACTCTTGCTCT 1 mlu_n_Myotis_ENSMLUG0000 ( 411) TGTGACGCAAATAGCTCAGA 1 sar_s_Sorex_ENSSARG00000 ( 447) AGTGACGTAAGTCCTCTTGG 1 caf_n_Canis_ENSCAFG00000 ( 482) AATGACACCGGCCGCTCCCG 1 cpo_n_Cavia_ENSCPOG00000 ( 406) GCTGACGCGGGCCTCTGGGG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 16847 bayes= 9.13081 E= 6.7e-093 -70 -99 -102 127 53 -247 120 -1110 -1110 -247 -1110 194 -1110 -1110 185 -1110 218 -1110 -1110 -1110 -1110 198 -1110 -1110 -169 -1110 175 -1110 -1110 102 -1110 96 204 -247 -260 -1110 -70 -1110 130 -46 -128 -247 156 -245 -1110 29 -1110 147 -228 173 -1110 -113 -1110 -115 -102 159 -1110 89 -1110 109 -1110 -247 -260 186 -1110 175 -202 -161 -228 -147 26 109 -1110 119 45 -245 123 -1110 50 -146 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 4 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 34 E= 6.7e-093 0.136364 0.127273 0.136364 0.600000 0.318182 0.045455 0.636364 0.000000 0.000000 0.045455 0.000000 0.954545 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.068182 0.000000 0.931818 0.000000 0.000000 0.513636 0.000000 0.486364 0.909091 0.045455 0.045455 0.000000 0.136364 0.000000 0.681818 0.181818 0.090909 0.045455 0.818182 0.045455 0.000000 0.309091 0.000000 0.690909 0.045455 0.840909 0.000000 0.113636 0.000000 0.113636 0.136364 0.750000 0.000000 0.468182 0.000000 0.531818 0.000000 0.045455 0.045455 0.909091 0.000000 0.850000 0.068182 0.081818 0.045455 0.090909 0.331818 0.531818 0.000000 0.577273 0.377273 0.045455 0.518182 0.000000 0.390909 0.090909 -------------------------------------------------------------------------------- Time 97.67 secs. ******************************************************************************** ******************************************************************************** MOTIF 5 width = 20 sites = 11 llr = 235 E-value = 2.2e-028 ******************************************************************************** -------------------------------------------------------------------------------- Motif 5 Description -------------------------------------------------------------------------------- Simplified A :a2:77:::a:::a5::::: pos.-specific C 9:::1:::9:5:9:553a9a probability G :::::3:::::1:::2:::: matrix T 1:8a2:aa1:591::27:1: bits 2.2 * * * 2.0 * * ** * * * * 1.7 * * ** * * * * 1.5 ** * **** *** *** Information 1.3 **** **** *** *** content 1.1 **** ********** **** (30.8 bits) 0.9 *************** **** 0.7 *************** **** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel CATTAATTCATTCACCTCCC consensus A TG C AGC sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- caj_n_Callithtrix_Contig 8 5.28e-13 CATCACT CATTAATTCATTCACCTCCC ATCAACAGAG mac_n_Macaca_ENSMMUG0000 9 9.89e-13 TAATCACT CATTAATTCATTCAACTCCC CATCCAAAGA ppy_n_Chr5 10 9.89e-13 ATAATCACT CATTAATTCATTCAACTCCC CATCCAAAGA ptr_n_Pan_ENSPTRG0000003 10 9.89e-13 CTAATCACT CATTAATTCATTCAACTCCC CACCCAGAGA hsa_n_Homo_ENST000004012 10 9.89e-13 CTAATCACT CATTAATTCATTCAACTCCC CACCCAAAGA eca_n_Equus_Chr14 58 9.43e-12 ATCAATCATT CATTAGTTCACTCACCTCCC CGTACAAAAA fca_n_Felis_ENSFCAG00000 49 7.41e-11 GATAATCCTT CATTAGTTCACTCACGCCCC ATCCCAAAAG tbe_n_Tupaia_ENSTBEG0000 18 3.19e-10 GGCTCTGGTG CATTTATTCATGCAACCCCC ACACAACATA caf_n_Canis_ENSCAFG00000 68 6.52e-10 GAAAGCCCAT CATTTATTTACTCACGCCCC CCCCCCCCCT mlu_n_Myotis_ENSMLUG0000 45 1.07e-09 GGTGCCCTGA TAATCATTCACTCACTTCCC CACCCCAAAA cpo_n_Cavia_ENSCPOG00000 57 1.71e-09 ATTCATCATT CAATAGTTCATTTAATTCTC CACCATGAGC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- caj_n_Callithtrix_Contig 5.3e-13 7_[5]_623 mac_n_Macaca_ENSMMUG0000 9.9e-13 8_[5]_623 ppy_n_Chr5 9.9e-13 9_[5]_622 ptr_n_Pan_ENSPTRG0000003 9.9e-13 9_[5]_622 hsa_n_Homo_ENST000004012 9.9e-13 9_[5]_622 eca_n_Equus_Chr14 9.4e-12 57_[5]_571 fca_n_Felis_ENSFCAG00000 7.4e-11 48_[5]_581 tbe_n_Tupaia_ENSTBEG0000 3.2e-10 17_[5]_615 caf_n_Canis_ENSCAFG00000 6.5e-10 67_[5]_561 mlu_n_Myotis_ENSMLUG0000 1.1e-09 44_[5]_587 cpo_n_Cavia_ENSCPOG00000 1.7e-09 56_[5]_576 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 5 width=20 seqs=11 caj_n_Callithtrix_Contig ( 8) CATTAATTCATTCACCTCCC 0.8 mac_n_Macaca_ENSMMUG0000 ( 9) CATTAATTCATTCAACTCCC 0.8 ppy_n_Chr5 ( 10) CATTAATTCATTCAACTCCC 0.4 ptr_n_Pan_ENSPTRG0000003 ( 10) CATTAATTCATTCAACTCCC 0.4 hsa_n_Homo_ENST000004012 ( 10) CATTAATTCATTCAACTCCC 0.4 eca_n_Equus_Chr14 ( 58) CATTAGTTCACTCACCTCCC 1 fca_n_Felis_ENSFCAG00000 ( 49) CATTAGTTCACTCACGCCCC 1 tbe_n_Tupaia_ENSTBEG0000 ( 18) CATTTATTCATGCAACCCCC 1 caf_n_Canis_ENSCAFG00000 ( 68) CATTTATTTACTCACGCCCC 1 mlu_n_Myotis_ENSMLUG0000 ( 45) TAATCATTCACTCACTTCCC 1 cpo_n_Cavia_ENSCPOG00000 ( 57) CAATAGTTCATTTAATTCTC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 16847 bayes= 11.011 E= 2.2e-028 -978 181 -978 -113 218 -978 -978 -978 4 -978 -978 163 -978 -978 -978 200 158 -115 -978 -13 158 -978 30 -978 -978 -978 -978 200 -978 -978 -978 200 -978 181 -978 -113 218 -978 -978 -978 -978 85 -978 113 -978 -978 -128 183 -978 181 -978 -113 218 -978 -978 -978 104 111 -978 -978 -978 111 -28 -13 -978 43 -978 140 -978 198 -978 -978 -978 181 -978 -113 -978 198 -978 -978 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 5 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 11 E= 2.2e-028 0.000000 0.886364 0.000000 0.113636 1.000000 0.000000 0.000000 0.000000 0.227273 0.000000 0.000000 0.772727 0.000000 0.000000 0.000000 1.000000 0.659091 0.113636 0.000000 0.227273 0.659091 0.000000 0.340909 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.886364 0.000000 0.113636 1.000000 0.000000 0.000000 0.000000 0.000000 0.454545 0.000000 0.545455 0.000000 0.000000 0.113636 0.886364 0.000000 0.886364 0.000000 0.113636 1.000000 0.000000 0.000000 0.000000 0.454545 0.545455 0.000000 0.000000 0.000000 0.545455 0.227273 0.227273 0.000000 0.340909 0.000000 0.659091 0.000000 1.000000 0.000000 0.000000 0.000000 0.886364 0.000000 0.113636 0.000000 1.000000 0.000000 0.000000 -------------------------------------------------------------------------------- Time 122.64 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 20 sites = 24 llr = 484 E-value = 3.3e-092 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A ::2a::7::399:::::9a: pos.-specific C 1::::9:171:::1196::1 probability G 1:::a:1926118::::::9 matrix T 9a8::1211:::299141:: bits 2.2 * 2.0 * ** * 1.7 * ** ** * 1.5 * *** ** * * *** Information 1.3 ****** ** *** *** content 1.1 ******** ********** (29.1 bits) 0.9 ******** ********** 0.7 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel TTTAGCAGCGAAGTTCCAAG consensus A T A T T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- mac_2,3_Macaque_ENSMMUG0 69 1.48e-12 GTTTATCTAG TTTAGCAGCGAAGTTCTAAG ATAAGGTCTG ppy_2,3_Pongo_ENSPPYG000 73 1.48e-12 GTTTATCTAG TTTAGCAGCGAAGTTCTAAG ATAAGGTCTG ggo_2,3_Gorilla_gorilla 73 1.48e-12 GTTTATCTAG TTTAGCAGCGAAGTTCTAAG ATAAGGTCTG ptr_3_Pan_c_ENSPTRG00000 71 1.48e-12 GTTTATCTAG TTTAGCAGCGAAGTTCTAAG ATAAGGTCTG hsa_3_Hs_AF045145_vaulta 71 1.48e-12 GTTTATCTAG TTTAGCAGCGAAGTTCTAAG ATAAGGTCTG ptr_2_Pan_b_ENSPTRG00000 73 1.48e-12 GTTTATCTAG TTTAGCAGCGAAGTTCTAAG ATAAGGTCTG hsa_2_Hs_AF045144_vaulta 73 1.48e-12 GTTTATCTAG TTTAGCAGCGAAGTTCTAAG ATAAGGTCTG ppy_1_Pongo_NSPPYG000000 67 1.48e-12 GTTTATCTAG TTTAGCAGCGAAGTTCTAAG ATAAGGTCTG ggo_1_Gorilla_gorilla 67 1.48e-12 GTTTATCTAG TTTAGCAGCGAAGTTCTAAG ATAAGGTCTG ptr_1_Pan_a_ENSPTRG00000 67 1.48e-12 GTTTATCTAG TTTAGCAGCGAAGTTCTAAG ATAAGGTCTG hsa_1_Hs_AF045143_vaulta 67 1.48e-12 GTTTATCTAG TTTAGCAGCGAAGTTCTAAG ATAAGGTCTG mac_1_Macaque_ENSMMUG000 62 2.66e-12 GTTTAACTAG TTTAGCAGCAAAGTTCTAAG ATAAGGTCTG caj_2,3_Callithrix_jacch 132 9.34e-12 GTTTATCTAG TTTAGCAGGGAAGTTCTAAG GTAAGGTCTG eca_s_14 82 1.17e-11 GTTTATCTGG TTTAGCTGCAAAGTTCCAAG ATAAAGACTA rno_s_Rattus_norvegicus 116 2.07e-11 GAGAACCTCT TTAAGCAGCGAATTTCCAAG GTATGTCTGG mmu_s_Mus_musculus 128 2.07e-11 GAGAGCCTCT TTAAGCAGCGAATTTCCAAG GTATGTCTGG tbe_s_Tupaia_ENSTBEG0000 108 9.69e-11 TTTTATCTGG TTTAGCAGTGAAGTTTCAAG ATAGTGCCAG bta_s_Bos_ENSBTAG0000002 59 7.19e-10 GGTTTACCTG GTTAGCTGCAAATTTCCAAG ATACGGCCCG caj_1_Callithrix_jacchus 71 2.68e-09 GTTCATCTAG TTTGGCAGCGAAGTTCTCAG ATAAGATCTG opr_s1_Ochotona_ENSOPRG0 111 4.52e-09 AGTTTTCTGT TTTAGTAGCAAGGTTTCAAG ACAATGTGTG opr_s3_Ochotona_ENSOPRG0 88 1.03e-08 TGGTTTGAGG TTTAGTAGCAAGGTGCCAAG AGCAGGTCTG str_s_Spermophilus_ENSST 146 1.36e-08 TTTTACTGGT TTAAGCATGCAAGTCCCAAG GACTGAATTA Choloepus_s_TA_136829265 44 4.17e-08 GTTTAAGTGG CTTAGCGGGGAAGCTCCAAC ATAAGACCTG fca_s_felCat3_184009:139 143 4.17e-08 TTTTCTTTGG TTTAGCTCTAGAGTTCTTAG TAAGGTCTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- mac_2,3_Macaque_ENSMMUG0 1.5e-12 68_[6]_550 ppy_2,3_Pongo_ENSPPYG000 1.5e-12 72_[6]_546 ggo_2,3_Gorilla_gorilla 1.5e-12 72_[6]_546 ptr_3_Pan_c_ENSPTRG00000 1.5e-12 70_[6]_548 hsa_3_Hs_AF045145_vaulta 1.5e-12 70_[6]_548 ptr_2_Pan_b_ENSPTRG00000 1.5e-12 72_[6]_546 hsa_2_Hs_AF045144_vaulta 1.5e-12 72_[6]_546 ppy_1_Pongo_NSPPYG000000 1.5e-12 66_[6]_561 ggo_1_Gorilla_gorilla 1.5e-12 66_[6]_562 ptr_1_Pan_a_ENSPTRG00000 1.5e-12 66_[6]_562 hsa_1_Hs_AF045143_vaulta 1.5e-12 66_[6]_562 mac_1_Macaque_ENSMMUG000 2.7e-12 61_[6]_569 caj_2,3_Callithrix_jacch 9.3e-12 131_[6]_487 eca_s_14 1.2e-11 81_[6]_536 rno_s_Rattus_norvegicus 2.1e-11 115_[6]_558 mmu_s_Mus_musculus 2.1e-11 127_[6]_545 tbe_s_Tupaia_ENSTBEG0000 9.7e-11 107_[6]_557 bta_s_Bos_ENSBTAG0000002 7.2e-10 58_[6]_568 caj_1_Callithrix_jacchus 2.7e-09 70_[6]_560 opr_s1_Ochotona_ENSOPRG0 4.5e-09 110_[6]_517 opr_s3_Ochotona_ENSOPRG0 1e-08 87_[6]_541 str_s_Spermophilus_ENSST 1.4e-08 145_[6]_472 Choloepus_s_TA_136829265 4.2e-08 43_[6]_597 fca_s_felCat3_184009:139 4.2e-08 142_[6]_477 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=20 seqs=24 mac_2,3_Macaque_ENSMMUG0 ( 69) TTTAGCAGCGAAGTTCTAAG 0.8 ppy_2,3_Pongo_ENSPPYG000 ( 73) TTTAGCAGCGAAGTTCTAAG 0.3 ggo_2,3_Gorilla_gorilla ( 73) TTTAGCAGCGAAGTTCTAAG 0.3 ptr_3_Pan_c_ENSPTRG00000 ( 71) TTTAGCAGCGAAGTTCTAAG 0.2 hsa_3_Hs_AF045145_vaulta ( 71) TTTAGCAGCGAAGTTCTAAG 0.2 ptr_2_Pan_b_ENSPTRG00000 ( 73) TTTAGCAGCGAAGTTCTAAG 0.2 hsa_2_Hs_AF045144_vaulta ( 73) TTTAGCAGCGAAGTTCTAAG 0.2 ppy_1_Pongo_NSPPYG000000 ( 67) TTTAGCAGCGAAGTTCTAAG 0.3 ggo_1_Gorilla_gorilla ( 67) TTTAGCAGCGAAGTTCTAAG 0.3 ptr_1_Pan_a_ENSPTRG00000 ( 67) TTTAGCAGCGAAGTTCTAAG 0.3 hsa_1_Hs_AF045143_vaulta ( 67) TTTAGCAGCGAAGTTCTAAG 0.3 mac_1_Macaque_ENSMMUG000 ( 62) TTTAGCAGCAAAGTTCTAAG 0.5 caj_2,3_Callithrix_jacch ( 132) TTTAGCAGGGAAGTTCTAAG 0.8 eca_s_14 ( 82) TTTAGCTGCAAAGTTCCAAG 1 rno_s_Rattus_norvegicus ( 116) TTAAGCAGCGAATTTCCAAG 1 mmu_s_Mus_musculus ( 128) TTAAGCAGCGAATTTCCAAG 1 tbe_s_Tupaia_ENSTBEG0000 ( 108) TTTAGCAGTGAAGTTTCAAG 1 bta_s_Bos_ENSBTAG0000002 ( 59) GTTAGCTGCAAATTTCCAAG 1 caj_1_Callithrix_jacchus ( 71) TTTGGCAGCGAAGTTCTCAG 0.5 opr_s1_Ochotona_ENSOPRG0 ( 111) TTTAGTAGCAAGGTTTCAAG 0.5 opr_s3_Ochotona_ENSOPRG0 ( 88) TTTAGTAGCAAGGTGCCAAG 0.5 str_s_Spermophilus_ENSST ( 146) TTAAGCATGCAAGTCCCAAG 1 Choloepus_s_TA_136829265 ( 44) CTTAGCGGGGAAGCTCCAAC 1 fca_s_felCat3_184009:139 ( 143) TTTAGCTCTAGAGTTCTTAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 16847 bayes= 10.8316 E= 3.3e-092 -1047 -184 -197 178 -1047 -1047 -1047 200 -6 -1047 -1047 166 213 -1047 -297 -1047 -1047 -1047 185 -1047 -1047 188 -1047 -182 170 -1047 -197 -24 -1047 -184 163 -182 -1047 139 -49 -82 52 -184 115 -1047 207 -1047 -197 -1047 207 -1047 -197 -1047 -1047 -1047 151 -24 -1047 -184 -1047 190 -1047 -184 -297 184 -1047 182 -1047 -124 -1047 116 -1047 81 202 -284 -1047 -182 218 -1047 -1047 -1047 -1047 -184 175 -1047 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 24 E= 3.3e-092 0.000000 0.070423 0.070423 0.859155 0.000000 0.000000 0.000000 1.000000 0.211268 0.000000 0.000000 0.788732 0.964789 0.000000 0.035211 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.929577 0.000000 0.070423 0.718310 0.000000 0.070423 0.211268 0.000000 0.070423 0.859155 0.070423 0.000000 0.661972 0.197183 0.140845 0.316901 0.070423 0.612676 0.000000 0.929577 0.000000 0.070423 0.000000 0.929577 0.000000 0.070423 0.000000 0.000000 0.000000 0.788732 0.211268 0.000000 0.070423 0.000000 0.929577 0.000000 0.070423 0.035211 0.894366 0.000000 0.894366 0.000000 0.105634 0.000000 0.563380 0.000000 0.436620 0.894366 0.035211 0.000000 0.070423 1.000000 0.000000 0.000000 0.000000 0.000000 0.070423 0.929577 0.000000 -------------------------------------------------------------------------------- Time 147.37 secs. ******************************************************************************** ******************************************************************************** MOTIF 7 width = 19 sites = 22 llr = 441 E-value = 1.6e-081 ******************************************************************************** -------------------------------------------------------------------------------- Motif 7 Description -------------------------------------------------------------------------------- Simplified A :a:::a827878:81a8:1 pos.-specific C 9:::9:::::::2:::129 probability G ::a:1:18:221:1::::: matrix T 1::a::1:3111819:28: bits 2.2 * * * 2.0 *** * * 1.7 *** * * 1.5 ****** * * Information 1.3 ******* * ***** ** content 1.1 ********** ******** (28.9 bits) 0.9 ******************* 0.7 ******************* 0.4 ******************* 0.2 ******************* 0.0 ------------------- Multilevel CAGTCAAGAAAATATAATC consensus T G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ------------------- caj_2,3_Callithrix_jacch 467 1.33e-12 TCTTTCTCAC CAGTCAAGAAAATATAATC CTGAAGCAGC mac_2,3_Macaque_ENSMMUG0 467 1.33e-12 TCTTTCTCAC CAGTCAAGAAAATATAATC CGGAAGCAGC ppy_2,3_Pongo_ENSPPYG000 467 1.33e-12 TCTTTCTCAC CAGTCAAGAAAATATAATC CGGAGACAAC ggo_2,3_Gorilla_gorilla 467 1.33e-12 TCTTTCTCAC CAGTCAAGAAAATATAATC CGAAGATAAC ptr_2_Pan_b_ENSPTRG00000 467 1.33e-12 TCTTTCTCAC CAGTCAAGAAAATATAATC CGGACATAGC hsa_2_Hs_AF045144_vaulta 467 1.33e-12 TCTTTCTCAC CAGTCAAGAAAATATAATC CGGAGATAGC mac_1_Macaque_ENSMMUG000 467 1.33e-12 TCTTTCTCAC CAGTCAAGAAAATATAATC CGGAAACAAC ppy_1_Pongo_NSPPYG000000 467 1.33e-12 TCTTTCTCGC CAGTCAAGAAAATATAATC CGAAAGCAAT ggo_1_Gorilla_gorilla 467 1.33e-12 TCTTTCTCAC CAGTCAAGAAAATATAATC CGAAAGCAAT caj_1_Callithrix_jacchus 468 1.26e-11 TCTTTCTCGC CAGTCAAGAAAATAAAATC CGGAAGCAGC ptr_1_Pan_a_ENSPTRG00000 467 4.13e-11 TCTTTCTCAC CAGTCAATAAAATATAATC CGAAAGCAAC hsa_1_Hs_AF045143_vaulta 467 4.13e-11 TCTTTCTCAC CAGTCAATAAAATATAATC CGAAAGCAAC tbe_s_Tupaia_ENSTBEG0000 467 4.92e-11 TCTTTCTCAC CAGTCAAGAAGACATAATC CTGAGCGAGC ptr_3_Pan_c_ENSPTRG00000 467 6.61e-11 TCTTTCTCAC CAGTCAAGAAAATACAATC CGAAAACAAC hsa_3_Hs_AF045145_vaulta 467 6.61e-11 TCTTTCTCAC CAGTCAAGAAAATACAATC CGAAAGCAAC fca_s_felCat3_184009:139 467 4.16e-10 TCTTTCTTGC CAGTCAAGATAGTATAATC TAGAGGATGT Choloepus_s_TA_136829265 465 1.35e-09 TATTTTCCAC TAGTCAAGAAGTTATAATC GAGAACTTTG mmu_s_Mus_musculus 467 2.30e-09 GTTTCTCTCA CAGTCATGTAAATATATCC AGGAAGAGAT bta_s_Bos_ENSBTAG0000002 467 2.96e-09 TCTTGCTCTG CAGTCAAGAGGACATAATA TGGGGAGTTT mlu_s_Myotis_scaffold_80 468 1.28e-08 TCCTTCTTAA CAGTGAAATGAATTTAATC AGAGGGCCAC str_s_Spermophilus_ENSST 467 1.28e-08 TCTTTCCCAA CAGTCAGATAAATAAACTC AGGTCCCGGC rno_s_Rattus_norvegicus 467 1.28e-08 GTTTCTCGCA CAGTCAAGTATATGTATCC AGGAAGTGGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- caj_2,3_Callithrix_jacch 1.3e-12 466_[7]_153 mac_2,3_Macaque_ENSMMUG0 1.3e-12 466_[7]_153 ppy_2,3_Pongo_ENSPPYG000 1.3e-12 466_[7]_153 ggo_2,3_Gorilla_gorilla 1.3e-12 466_[7]_153 ptr_2_Pan_b_ENSPTRG00000 1.3e-12 466_[7]_153 hsa_2_Hs_AF045144_vaulta 1.3e-12 466_[7]_153 mac_1_Macaque_ENSMMUG000 1.3e-12 466_[7]_165 ppy_1_Pongo_NSPPYG000000 1.3e-12 466_[7]_162 ggo_1_Gorilla_gorilla 1.3e-12 466_[7]_163 caj_1_Callithrix_jacchus 1.3e-11 467_[7]_164 ptr_1_Pan_a_ENSPTRG00000 4.1e-11 466_[7]_163 hsa_1_Hs_AF045143_vaulta 4.1e-11 466_[7]_163 tbe_s_Tupaia_ENSTBEG0000 4.9e-11 466_[7]_199 ptr_3_Pan_c_ENSPTRG00000 6.6e-11 466_[7]_153 hsa_3_Hs_AF045145_vaulta 6.6e-11 466_[7]_153 fca_s_felCat3_184009:139 4.2e-10 466_[7]_154 Choloepus_s_TA_136829265 1.4e-09 464_[7]_177 mmu_s_Mus_musculus 2.3e-09 466_[7]_207 bta_s_Bos_ENSBTAG0000002 3e-09 466_[7]_161 mlu_s_Myotis_scaffold_80 1.3e-08 467_[7]_170 str_s_Spermophilus_ENSST 1.3e-08 466_[7]_152 rno_s_Rattus_norvegicus 1.3e-08 466_[7]_208 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 7 width=19 seqs=22 caj_2,3_Callithrix_jacch ( 467) CAGTCAAGAAAATATAATC 0.8 mac_2,3_Macaque_ENSMMUG0 ( 467) CAGTCAAGAAAATATAATC 0.8 ppy_2,3_Pongo_ENSPPYG000 ( 467) CAGTCAAGAAAATATAATC 0.3 ggo_2,3_Gorilla_gorilla ( 467) CAGTCAAGAAAATATAATC 0.3 ptr_2_Pan_b_ENSPTRG00000 ( 467) CAGTCAAGAAAATATAATC 0.2 hsa_2_Hs_AF045144_vaulta ( 467) CAGTCAAGAAAATATAATC 0.2 mac_1_Macaque_ENSMMUG000 ( 467) CAGTCAAGAAAATATAATC 0.5 ppy_1_Pongo_NSPPYG000000 ( 467) CAGTCAAGAAAATATAATC 0.3 ggo_1_Gorilla_gorilla ( 467) CAGTCAAGAAAATATAATC 0.3 caj_1_Callithrix_jacchus ( 468) CAGTCAAGAAAATAAAATC 0.5 ptr_1_Pan_a_ENSPTRG00000 ( 467) CAGTCAATAAAATATAATC 0.3 hsa_1_Hs_AF045143_vaulta ( 467) CAGTCAATAAAATATAATC 0.3 tbe_s_Tupaia_ENSTBEG0000 ( 467) CAGTCAAGAAGACATAATC 1 ptr_3_Pan_c_ENSPTRG00000 ( 467) CAGTCAAGAAAATACAATC 0.2 hsa_3_Hs_AF045145_vaulta ( 467) CAGTCAAGAAAATACAATC 0.2 fca_s_felCat3_184009:139 ( 467) CAGTCAAGATAGTATAATC 1 Choloepus_s_TA_136829265 ( 465) TAGTCAAGAAGTTATAATC 1 mmu_s_Mus_musculus ( 467) CAGTCATGTAAATATATCC 1 bta_s_Bos_ENSBTAG0000002 ( 467) CAGTCAAGAGGACATAATA 1 mlu_s_Myotis_scaffold_80 ( 468) CAGTGAAATGAATTTAATC 1 str_s_Spermophilus_ENSST ( 467) CAGTCAGATAAATAAACTC 1 rno_s_Rattus_norvegicus ( 467) CAGTCAAGTATATGTATCC 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 19 n= 16887 bayes= 9.22161 E= 1.6e-081 -1037 187 -1037 -172 218 -1037 -1037 -1037 -1037 -1037 185 -1037 -1037 -1037 -1037 200 -1037 187 -187 -1037 218 -1037 -1037 -1037 194 -1037 -187 -172 -54 -1037 154 -245 166 -1037 -1037 28 181 -1037 -87 -172 166 -1037 -28 -172 194 -1037 -187 -172 -1037 -74 -1037 176 194 -1037 -187 -172 -96 -305 -1037 178 218 -1037 -1037 -1037 181 -174 -1037 -72 -1037 -74 -1037 176 -154 187 -1037 -1037 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 7 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 19 nsites= 22 E= 1.6e-081 0.000000 0.924242 0.000000 0.075758 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.924242 0.075758 0.000000 1.000000 0.000000 0.000000 0.000000 0.848485 0.000000 0.075758 0.075758 0.151515 0.000000 0.803030 0.045455 0.696970 0.000000 0.000000 0.303030 0.772727 0.000000 0.151515 0.075758 0.696970 0.000000 0.227273 0.075758 0.848485 0.000000 0.075758 0.075758 0.000000 0.151515 0.000000 0.848485 0.848485 0.000000 0.075758 0.075758 0.113636 0.030303 0.000000 0.856061 1.000000 0.000000 0.000000 0.000000 0.772727 0.075758 0.000000 0.151515 0.000000 0.151515 0.000000 0.848485 0.075758 0.924242 0.000000 0.000000 -------------------------------------------------------------------------------- Time 172.51 secs. ******************************************************************************** ******************************************************************************** MOTIF 8 width = 20 sites = 19 llr = 455 E-value = 3.7e-096 ******************************************************************************** -------------------------------------------------------------------------------- Motif 8 Description -------------------------------------------------------------------------------- Simplified A a:97:::7:a::::::9aa1 pos.-specific C :a::::::a:68::12:::: probability G ::13:::3::3:::9:1::9 matrix T ::::aaa::::2aa:8:::: bits 2.2 * * ** 2.0 ** *** ** ** ** 1.7 *** *** ** ** ** 1.5 *** *** ** ** **** Information 1.3 ********** ********* content 1.1 ********** ********* (34.6 bits) 0.9 ******************** 0.7 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel ACAATTTACACCTTGTAAAG consensus G G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- mac_2,3_Macaque_ENSMMUG0 103 4.28e-13 GGTCTGAAAT ACAATTTACACCTTGTAAAG ACTCCACTCC ppy_2,3_Pongo_ENSPPYG000 107 4.28e-13 GGTCTGAAAT ACAATTTACACCTTGTAAAG ACGCCACTCC ggo_2,3_Gorilla_gorilla 107 4.28e-13 GGTCTGAAAT ACAATTTACACCTTGTAAAG ACGCCACTCC ptr_3_Pan_c_ENSPTRG00000 105 4.28e-13 GGTCTGAAAT ACAATTTACACCTTGTAAAG ACTCCACTCT hsa_3_Hs_AF045145_vaulta 105 4.28e-13 GGTCTGAAAT ACAATTTACACCTTGTAAAG ACTCCACTCT ptr_2_Pan_b_ENSPTRG00000 107 4.28e-13 GGTCTGAAAT ACAATTTACACCTTGTAAAG ACGCCACTCC hsa_2_Hs_AF045144_vaulta 107 4.28e-13 GGTCTGAAAT ACAATTTACACCTTGTAAAG ACGCCACTCC ggo_1_Gorilla_gorilla 101 4.28e-13 GGTCTGAAAT ACAATTTACACCTTGTAAAG ACTCCACTCC ptr_1_Pan_a_ENSPTRG00000 101 4.28e-13 GGTCTGAAAT ACAATTTACACCTTGTAAAG ACTCCACTCC hsa_1_Hs_AF045143_vaulta 101 4.28e-13 GGTCTGAAAT ACAATTTACACCTTGTAAAG ACTCCACTCC caj_2,3_Callithrix_jacch 166 8.96e-13 GGTCTGAAAT ACAATTTACAGCTTGTAAAG ACTCCCCCTG caj_1_Callithrix_jacchus 105 8.96e-13 GATCTGAAAT ACAATTTACAGCTTGTAAAG ACTCCACTCC mac_1_Macaque_ENSMMUG000 96 4.87e-12 GGTCTGAAAT ACAATTTACACCTTGTGAAG ACTCCACTGC str_s_Spermophilus_ENSST 175 6.87e-12 GGACTGAATT ACAGTTTGCACCTTGTAAAG CTTTCACTTC ppy_1_Pongo_NSPPYG000000 101 1.47e-11 GGTCTGAAAT ACAATTTACATCTTGTAAAG ACTCCACTCC rno_s_Rattus_norvegicus 150 3.04e-11 GTCTGGAGTA ACAGTTTACACTTTGCAAAG TTTCCACTTG mmu_s_Mus_musculus 162 3.04e-11 GTCTGGAATA ACAGTTTACACTTTGCAAAG CTTCCACTTG eca_s_14 116 9.38e-11 AGACTAAAAC ACAATTTGCAGCTTGTGAAA TTTCCACTCT bta_s_Bos_ENSBTAG0000002 93 1.27e-10 GGCCCGAATA ACGATTTGCAGCTTCTAAAG ATTCAAATCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- mac_2,3_Macaque_ENSMMUG0 4.3e-13 102_[8]_516 ppy_2,3_Pongo_ENSPPYG000 4.3e-13 106_[8]_512 ggo_2,3_Gorilla_gorilla 4.3e-13 106_[8]_512 ptr_3_Pan_c_ENSPTRG00000 4.3e-13 104_[8]_514 hsa_3_Hs_AF045145_vaulta 4.3e-13 104_[8]_514 ptr_2_Pan_b_ENSPTRG00000 4.3e-13 106_[8]_512 hsa_2_Hs_AF045144_vaulta 4.3e-13 106_[8]_512 ggo_1_Gorilla_gorilla 4.3e-13 100_[8]_528 ptr_1_Pan_a_ENSPTRG00000 4.3e-13 100_[8]_528 hsa_1_Hs_AF045143_vaulta 4.3e-13 100_[8]_528 caj_2,3_Callithrix_jacch 9e-13 165_[8]_453 caj_1_Callithrix_jacchus 9e-13 104_[8]_526 mac_1_Macaque_ENSMMUG000 4.9e-12 95_[8]_535 str_s_Spermophilus_ENSST 6.9e-12 174_[8]_443 ppy_1_Pongo_NSPPYG000000 1.5e-11 100_[8]_527 rno_s_Rattus_norvegicus 3e-11 149_[8]_524 mmu_s_Mus_musculus 3e-11 161_[8]_511 eca_s_14 9.4e-11 115_[8]_502 bta_s_Bos_ENSBTAG0000002 1.3e-10 92_[8]_534 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 8 width=20 seqs=19 mac_2,3_Macaque_ENSMMUG0 ( 103) ACAATTTACACCTTGTAAAG 0.8 ppy_2,3_Pongo_ENSPPYG000 ( 107) ACAATTTACACCTTGTAAAG 0.3 ggo_2,3_Gorilla_gorilla ( 107) ACAATTTACACCTTGTAAAG 0.3 ptr_3_Pan_c_ENSPTRG00000 ( 105) ACAATTTACACCTTGTAAAG 0.2 hsa_3_Hs_AF045145_vaulta ( 105) ACAATTTACACCTTGTAAAG 0.2 ptr_2_Pan_b_ENSPTRG00000 ( 107) ACAATTTACACCTTGTAAAG 0.2 hsa_2_Hs_AF045144_vaulta ( 107) ACAATTTACACCTTGTAAAG 0.2 ggo_1_Gorilla_gorilla ( 101) ACAATTTACACCTTGTAAAG 0.3 ptr_1_Pan_a_ENSPTRG00000 ( 101) ACAATTTACACCTTGTAAAG 0.3 hsa_1_Hs_AF045143_vaulta ( 101) ACAATTTACACCTTGTAAAG 0.3 caj_2,3_Callithrix_jacch ( 166) ACAATTTACAGCTTGTAAAG 0.8 caj_1_Callithrix_jacchus ( 105) ACAATTTACAGCTTGTAAAG 0.5 mac_1_Macaque_ENSMMUG000 ( 96) ACAATTTACACCTTGTGAAG 0.5 str_s_Spermophilus_ENSST ( 175) ACAGTTTGCACCTTGTAAAG 1 ppy_1_Pongo_NSPPYG000000 ( 101) ACAATTTACATCTTGTAAAG 0.3 rno_s_Rattus_norvegicus ( 150) ACAGTTTACACTTTGCAAAG 1 mmu_s_Mus_musculus ( 162) ACAGTTTACACTTTGCAAAG 1 eca_s_14 ( 116) ACAATTTGCAGCTTGTGAAA 1 bta_s_Bos_ENSBTAG0000002 ( 93) ACGATTTGCAGCTTCTAAAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 16847 bayes= 8.9482 E= 3.7e-096 218 -1000 -1000 -1000 -1000 198 -1000 -1000 203 -1000 -150 -1000 168 -1000 9 -1000 -1000 -1000 -1000 200 -1000 -1000 -1000 200 -1000 -1000 -1000 200 168 -1000 9 -1000 -1000 198 -1000 -1000 218 -1000 -1000 -1000 -1000 136 22 -307 -1000 167 -1000 -35 -1000 -1000 -1000 200 -1000 -1000 -1000 200 -1000 -136 170 -1000 -1000 -37 -1000 169 195 -1000 -91 -1000 218 -1000 -1000 -1000 218 -1000 -1000 -1000 -117 -1000 170 -1000 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 8 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 19 E= 3.7e-096 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.901961 0.000000 0.098039 0.000000 0.705882 0.000000 0.294118 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.705882 0.000000 0.294118 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.647059 0.323529 0.029412 0.000000 0.803922 0.000000 0.196078 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.098039 0.901961 0.000000 0.000000 0.196078 0.000000 0.803922 0.852941 0.000000 0.147059 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.098039 0.000000 0.901961 0.000000 -------------------------------------------------------------------------------- Time 196.79 secs. ******************************************************************************** ******************************************************************************** MOTIF 9 width = 20 sites = 11 llr = 226 E-value = 5.1e-025 ******************************************************************************** -------------------------------------------------------------------------------- Motif 9 Description -------------------------------------------------------------------------------- Simplified A ::11::9::::1:9::1:a1 pos.-specific C :19388::::59a1:92a:: probability G 8:::::1aaa2:::a::::9 matrix T 29:522::::2::::17::: bits 2.2 * 2.0 *** * * ** 1.7 *** *** ** 1.5 ** **** ***** ** Information 1.3 ** ****** ***** *** content 1.1 *** ****** ***** *** (29.7 bits) 0.9 *** ****** ********* 0.7 ********** ********* 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel GTCTCCAGGGCCCAGCTCAG consensus T CTT G C sequence T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- tbe_n_Tupaia_ENSTBEG0000 62 1.26e-12 CTCGAACTCT GTCTCCAGGGCCCAGCTCAG GACCTTCTGC caj_n_Callithtrix_Contig 60 1.13e-11 ATGAACTCTG TTCTCCAGGGCCCAGCTCAG GACATGGCAG mac_n_Macaca_ENSMMUG0000 61 2.43e-11 CATGAACTCC GTCTCCAGGGTCCAGCCCAG GACCTGGCTA ppy_n_Chr5 62 2.43e-11 GATGAACTCC GTCTCCAGGGTCCAGCCCAG GACCTGGCAA ptr_n_Pan_ENSPTRG0000003 62 2.43e-11 GATGAACTCC GTCTCCAGGGTCCAGCCCAG GACCTGGCAA hsa_n_Homo_ENST000004012 62 2.43e-11 GATGAACTCC GTCTCCAGGGTCCAGCCCAG GACCTGGCAA eca_n_Equus_Chr14 112 3.56e-11 GGAGCCTTGT GTCCCCAGGGCCCAGCACAG AGATGAAACG mlu_n_Myotis_ENSMLUG0000 96 1.13e-10 CAAACGCTGA GTCTTCAGGGCACAGCTCAG GGCCTGACAC fca_n_Felis_ENSFCAG00000 100 1.01e-09 CACGAACTCC GTCACTAGGGGCCAGCTCAA GGGCCGGGCA cpo_n_Cavia_ENSCPOG00000 90 3.34e-09 CATGAGCACC GTCCTTGGGGCCCAGTTCAG GACCTGGTAT caf_n_Canis_ENSCAFG00000 132 8.19e-09 ACCAACTTTG TCACCCAGGGGCCCGCTCAG GGCCTGGCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- tbe_n_Tupaia_ENSTBEG0000 1.3e-12 61_[9]_571 caj_n_Callithtrix_Contig 1.1e-11 59_[9]_571 mac_n_Macaca_ENSMMUG0000 2.4e-11 60_[9]_571 ppy_n_Chr5 2.4e-11 61_[9]_570 ptr_n_Pan_ENSPTRG0000003 2.4e-11 61_[9]_570 hsa_n_Homo_ENST000004012 2.4e-11 61_[9]_570 eca_n_Equus_Chr14 3.6e-11 111_[9]_517 mlu_n_Myotis_ENSMLUG0000 1.1e-10 95_[9]_536 fca_n_Felis_ENSFCAG00000 1e-09 99_[9]_530 cpo_n_Cavia_ENSCPOG00000 3.3e-09 89_[9]_543 caf_n_Canis_ENSCAFG00000 8.2e-09 131_[9]_497 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 9 width=20 seqs=11 tbe_n_Tupaia_ENSTBEG0000 ( 62) GTCTCCAGGGCCCAGCTCAG 1 caj_n_Callithtrix_Contig ( 60) TTCTCCAGGGCCCAGCTCAG 0.8 mac_n_Macaca_ENSMMUG0000 ( 61) GTCTCCAGGGTCCAGCCCAG 0.8 ppy_n_Chr5 ( 62) GTCTCCAGGGTCCAGCCCAG 0.4 ptr_n_Pan_ENSPTRG0000003 ( 62) GTCTCCAGGGTCCAGCCCAG 0.4 hsa_n_Homo_ENST000004012 ( 62) GTCTCCAGGGTCCAGCCCAG 0.4 eca_n_Equus_Chr14 ( 112) GTCCCCAGGGCCCAGCACAG 1 mlu_n_Myotis_ENSMLUG0000 ( 96) GTCTTCAGGGCACAGCTCAG 1 fca_n_Felis_ENSFCAG00000 ( 100) GTCACTAGGGGCCAGCTCAA 1 cpo_n_Cavia_ENSCPOG00000 ( 90) GTCCTTGGGGCCCAGTTCAG 1 caf_n_Canis_ENSCAFG00000 ( 132) TCACCCAGGGGCCCGCTCAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 16847 bayes= 11.011 E= 5.1e-025 -978 -978 152 -29 -978 -115 -978 183 -96 181 -978 -978 -96 43 -978 113 -978 161 -978 -13 -978 161 -978 -13 200 -978 -128 -978 -978 -978 185 -978 -978 -978 185 -978 -978 -978 185 -978 -978 111 -28 -13 -96 181 -978 -978 -978 198 -978 -978 200 -115 -978 -978 -978 -978 185 -978 -978 181 -978 -113 -96 -15 -978 140 -978 198 -978 -978 218 -978 -978 -978 -96 -978 168 -978 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 9 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 11 E= 5.1e-025 0.000000 0.000000 0.795455 0.204545 0.000000 0.113636 0.000000 0.886364 0.113636 0.886364 0.000000 0.000000 0.113636 0.340909 0.000000 0.545455 0.000000 0.772727 0.000000 0.227273 0.000000 0.772727 0.000000 0.227273 0.886364 0.000000 0.113636 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.545455 0.227273 0.227273 0.113636 0.886364 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.886364 0.113636 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.886364 0.000000 0.113636 0.113636 0.227273 0.000000 0.659091 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.113636 0.000000 0.886364 0.000000 -------------------------------------------------------------------------------- Time 221.18 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 15 sites = 6 llr = 106 E-value = 1.4e-002 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A ::38::::::28:28 pos.-specific C ::7::::2aa82::: probability G ::::::::::::a:2 matrix T aa:2aaa8:::::8: bits 2.2 2.0 ** *** ** * 1.7 ** *** ** * 1.5 ** **** ** ** * Information 1.3 ** ************ content 1.1 *************** (25.5 bits) 0.9 *************** 0.7 *************** 0.4 *************** 0.2 *************** 0.0 --------------- Multilevel TTCATTTTCCCAGTA consensus A sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- --------------- fca_s_felCat3_184009:139 608 7.33e-10 CCCAGCTCTC TTCATTTTCCCAGTA ATCAGCTTCG mlu_s_Myotis_scaffold_80 622 7.33e-10 TGTCTCAGCT TTCATTTTCCCAGTA ATTAGCCTTG tbe_s_Tupaia_ENSTBEG0000 650 1.37e-09 TCTGCCTGGC TTAATTTTCCCAGTA CCCAGACTTG eca_s_14 609 5.07e-09 CCCAGCCTTC TTCATTTTCCCCGTA AGCAGCCTTG bta_s_Bos_ENSBTAG0000002 611 1.65e-08 CTGTCCCACC TTCATTTTCCCAGAG ATCCCGCTCG str_s_Spermophilus_ENSST 604 5.30e-08 ACCTCAACTT TTATTTTCCCAAGTA ACCAGCCTGG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- fca_s_felCat3_184009:139 7.3e-10 607_[10]_17 mlu_s_Myotis_scaffold_80 7.3e-10 621_[10]_20 tbe_s_Tupaia_ENSTBEG0000 1.4e-09 649_[10]_20 eca_s_14 5.1e-09 608_[10]_14 bta_s_Bos_ENSBTAG0000002 1.6e-08 610_[10]_21 str_s_Spermophilus_ENSST 5.3e-08 603_[10]_19 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=15 seqs=6 fca_s_felCat3_184009:139 ( 608) TTCATTTTCCCAGTA 1 mlu_s_Myotis_scaffold_80 ( 622) TTCATTTTCCCAGTA 1 tbe_s_Tupaia_ENSTBEG0000 ( 650) TTAATTTTCCCAGTA 1 eca_s_14 ( 609) TTCATTTTCCCCGTA 1 bta_s_Bos_ENSBTAG0000002 ( 611) TTCATTTTCCCAGAG 1 str_s_Spermophilus_ENSST ( 604) TTATTTTCCCAAGTA 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 15 n= 17047 bayes= 11.9194 E= 1.4e-002 -923 -923 -923 200 -923 -923 -923 200 59 140 -923 -923 191 -923 -923 -58 -923 -923 -923 200 -923 -923 -923 200 -923 -923 -923 200 -923 -60 -923 174 -923 198 -923 -923 -923 198 -923 -923 -41 172 -923 -923 191 -60 -923 -923 -923 -923 185 -923 -41 -923 -923 174 191 -923 -73 -923 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 15 nsites= 6 E= 1.4e-002 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.333333 0.666667 0.000000 0.000000 0.833333 0.000000 0.000000 0.166667 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.833333 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.166667 0.833333 0.000000 0.000000 0.833333 0.166667 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.166667 0.000000 0.000000 0.833333 0.833333 0.000000 0.166667 0.000000 -------------------------------------------------------------------------------- Time 245.57 secs. ******************************************************************************** ******************************************************************************** MOTIF 10 width = 28 sites = 17 llr = 528 E-value = 1.1e-117 ******************************************************************************** -------------------------------------------------------------------------------- Motif 10 Description -------------------------------------------------------------------------------- Simplified A ::81::::6aa9::::9::::8:19:a6 pos.-specific C a:2:2:2:::::::21:::::2:918:: probability G :1:8::8:4:::a::91:::9:1::2:4 matrix T :9:18a:a:::1:a8::aaa1:9::::: bits 2.2 ** 2.0 * * * ** ** *** * 1.7 * * * ** ** *** * * 1.5 *** * * ***** **** *** * Information 1.3 *** * * ***** ********** * content 1.1 *** ************************ (44.8 bits) 0.9 **************************** 0.7 **************************** 0.4 **************************** 0.2 **************************** 0.0 ---------------------------- Multilevel CTAGTTGTAAAAGTTGATTTGATCACAA consensus C G C C G G sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------------------- mac_2,3_Macaque_ENSMMUG0 146 6.79e-18 GGCCCAACCA CTAGTTGTAAAAGTTGATTTGATCACAA AGTGACCCTG ppy_2,3_Pongo_ENSPPYG000 150 6.79e-18 GGCCCAAGCC CTAGTTGTAAAAGTTGATTTGATCACAA AGTGACCCTG mac_1_Macaque_ENSMMUG000 139 6.79e-18 GGCCCAAGCA CTAGTTGTAAAAGTTGATTTGATCACAA AGTGATACTG ppy_1_Pongo_NSPPYG000000 144 6.79e-18 CGCCCAAGCA CTAGTTGTAAAAGTTGATTTGATCACAA AGTGACCCTG ggo_2,3_Gorilla_gorilla 150 3.75e-17 GGCCCAAGCA CTAGTTGTAAAAGTCGATTTGATCACAA AGTGACCCTG ptr_2_Pan_b_ENSPTRG00000 150 3.75e-17 GGCCCAAGCA CTAGTTGTAAAAGTCGATTTGATCACAA AGTGACCCTG hsa_2_Hs_AF045144_vaulta 150 3.75e-17 GGCCCAAGCA CTAGTTGTAAAAGTCGATTTGATCACAA AGTGACCCTG ggo_1_Gorilla_gorilla 144 3.75e-17 GGCNCAAGCA CTAGTTGTAAAAGTCGATTTGATCACAA AGTGACCCTG ptr_1_Pan_a_ENSPTRG00000 144 3.75e-17 GGCCCAAGCA CTAGTTGTAAAAGTCGATTTGATCACAA AGTGACCCTG ptr_3_Pan_c_ENSPTRG00000 148 1.65e-15 GACCCAAGCT CTACTTGTAAAAGTCGATTTGATCACAA AGTGACCCTG hsa_3_Hs_AF045145_vaulta 148 1.65e-15 GACCCAAGCT CTACTTGTAAAAGTCGATTTGATCACAA AGTGACCCTG Choloepus_s_TA_136829265 121 2.01e-15 GACTAAGGCG CTAGCTGTGAAAGTTGATTTGCTCACAG AGCGACCCCT hsa_1_Hs_AF045143_vaulta 144 4.47e-15 GGCCCAAGCA CTAGTTGTAAAAGTCGATTTGATCACGA AGTGACCCTG caj_1_Callithrix_jacchus 148 8.54e-15 AACCCAAGCA CTCATTCTAAAAGTTGATTTGATCACAA AGTGACGCTG tbe_s_Tupaia_ENSTBEG0000 183 7.01e-14 GATTCAGACA CTAGCTGTGAATGTTCATTTGCTCACAG TGATCCCACG caj_2,3_Callithrix_jacch 204 7.85e-14 TGACCAAGCA CTAGTTGTAAAAGTTGATTTGAGACGAA GGAGGTGGGG eca_s_14 157 1.97e-12 CTGACTCAGG CGCTTTCTGAAAGTTGGTTTTATCAGAG TGACCCTACG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- mac_2,3_Macaque_ENSMMUG0 6.8e-18 145_[10]_465 ppy_2,3_Pongo_ENSPPYG000 6.8e-18 149_[10]_461 mac_1_Macaque_ENSMMUG000 6.8e-18 138_[10]_484 ppy_1_Pongo_NSPPYG000000 6.8e-18 143_[10]_476 ggo_2,3_Gorilla_gorilla 3.8e-17 149_[10]_461 ptr_2_Pan_b_ENSPTRG00000 3.8e-17 149_[10]_461 hsa_2_Hs_AF045144_vaulta 3.8e-17 149_[10]_461 ggo_1_Gorilla_gorilla 3.8e-17 143_[10]_477 ptr_1_Pan_a_ENSPTRG00000 3.8e-17 143_[10]_477 ptr_3_Pan_c_ENSPTRG00000 1.7e-15 147_[10]_463 hsa_3_Hs_AF045145_vaulta 1.7e-15 147_[10]_463 Choloepus_s_TA_136829265 2e-15 120_[10]_512 hsa_1_Hs_AF045143_vaulta 4.5e-15 143_[10]_477 caj_1_Callithrix_jacchus 8.5e-15 147_[10]_475 tbe_s_Tupaia_ENSTBEG0000 7e-14 182_[10]_474 caj_2,3_Callithrix_jacch 7.8e-14 203_[10]_407 eca_s_14 2e-12 156_[10]_453 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 10 width=28 seqs=17 mac_2,3_Macaque_ENSMMUG0 ( 146) CTAGTTGTAAAAGTTGATTTGATCACAA 0.8 ppy_2,3_Pongo_ENSPPYG000 ( 150) CTAGTTGTAAAAGTTGATTTGATCACAA 0.3 mac_1_Macaque_ENSMMUG000 ( 139) CTAGTTGTAAAAGTTGATTTGATCACAA 0.5 ppy_1_Pongo_NSPPYG000000 ( 144) CTAGTTGTAAAAGTTGATTTGATCACAA 0.3 ggo_2,3_Gorilla_gorilla ( 150) CTAGTTGTAAAAGTCGATTTGATCACAA 0.3 ptr_2_Pan_b_ENSPTRG00000 ( 150) CTAGTTGTAAAAGTCGATTTGATCACAA 0.2 hsa_2_Hs_AF045144_vaulta ( 150) CTAGTTGTAAAAGTCGATTTGATCACAA 0.2 ggo_1_Gorilla_gorilla ( 144) CTAGTTGTAAAAGTCGATTTGATCACAA 0.3 ptr_1_Pan_a_ENSPTRG00000 ( 144) CTAGTTGTAAAAGTCGATTTGATCACAA 0.3 ptr_3_Pan_c_ENSPTRG00000 ( 148) CTACTTGTAAAAGTCGATTTGATCACAA 0.2 hsa_3_Hs_AF045145_vaulta ( 148) CTACTTGTAAAAGTCGATTTGATCACAA 0.2 Choloepus_s_TA_136829265 ( 121) CTAGCTGTGAAAGTTGATTTGCTCACAG 1 hsa_1_Hs_AF045143_vaulta ( 144) CTAGTTGTAAAAGTCGATTTGATCACGA 0.3 caj_1_Callithrix_jacchus ( 148) CTCATTCTAAAAGTTGATTTGATCACAA 0.5 tbe_s_Tupaia_ENSTBEG0000 ( 183) CTAGCTGTGAATGTTCATTTGCTCACAG 1 caj_2,3_Callithrix_jacch ( 204) CTAGTTGTAAAAGTTGATTTGAGACGAA 0.8 eca_s_14 ( 157) CGCTTTCTGAAAGTTGGTTTTATCAGAG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 16527 bayes= 10.1593 E= 1.1e-117 -968 198 -968 -968 -968 -968 -118 181 189 -47 -968 -968 -185 -237 147 -103 -968 -5 -968 160 -968 -968 -968 200 -968 -47 156 -968 -968 -968 -968 200 152 -968 40 -968 218 -968 -968 -968 218 -968 -968 -968 199 -968 -968 -103 -968 -968 185 -968 -968 -968 -968 200 -968 -5 -968 160 -968 -105 166 -968 199 -968 -118 -968 -968 -968 -968 200 -968 -968 -968 200 -968 -968 -968 200 -968 -968 166 -103 177 -5 -968 -968 -968 -968 -150 185 -118 183 -968 -968 203 -137 -968 -968 -968 163 -33 -968 212 -968 -291 -968 152 -968 40 -968 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 10 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 17 E= 1.1e-117 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.121951 0.878049 0.817073 0.182927 0.000000 0.000000 0.060976 0.048780 0.768293 0.121951 0.000000 0.243902 0.000000 0.756098 0.000000 0.000000 0.000000 1.000000 0.000000 0.182927 0.817073 0.000000 0.000000 0.000000 0.000000 1.000000 0.634146 0.000000 0.365854 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.878049 0.000000 0.000000 0.121951 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.243902 0.000000 0.756098 0.000000 0.121951 0.878049 0.000000 0.878049 0.000000 0.121951 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.878049 0.121951 0.756098 0.243902 0.000000 0.000000 0.000000 0.000000 0.097561 0.902439 0.097561 0.902439 0.000000 0.000000 0.902439 0.097561 0.000000 0.000000 0.000000 0.780488 0.219512 0.000000 0.963415 0.000000 0.036585 0.000000 0.634146 0.000000 0.365854 0.000000 -------------------------------------------------------------------------------- Time 250.11 secs. ******************************************************************************** ******************************************************************************** MOTIF 6 width = 28 sites = 10 llr = 281 E-value = 2.5e-039 ******************************************************************************** -------------------------------------------------------------------------------- Motif 6 Description -------------------------------------------------------------------------------- Simplified A ::::5:::1:11119a:3::a:9:1::: pos.-specific C 6947::9a4:2::7::11:a:7:::a:: probability G ::11:a::::199:1:9::::::a9::a matrix T 41515:1:5a5::1:::6a::31:::a: bits 2.2 * * 2.0 * * * * *** * *** 1.7 * * * * *** * *** 1.5 * *** * ** *** ** *** Information 1.3 * *** * ** *** *** ****** content 1.1 ** **** * ** *** ********** (40.6 bits) 0.9 ** ***** * ****** ********** 0.7 ********** ***************** 0.4 ********** ***************** 0.2 **************************** 0.0 ---------------------------- Multilevel CCTCAGCCTTTGGCAAGTTCACAGGCTG consensus T C T C C A T sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- ---------------------------- caj_n_Callithtrix_Contig 108 1.24e-16 AACCACAGAA CCCCTGCCTTTGGCAAGTTCACAGGCTG CTTGGGGGTG ppy_n_Chr5 109 9.53e-16 AACCACAGAA CCCCTGCCTTTGGCAAGTTCATAGGCTG CTTCGGGGAG ptr_n_Pan_ENSPTRG0000003 109 9.53e-16 AACCACAGAA CCCCTGCCTTTGGCAAGTTCATAGGCTG CTTCGGGGAG hsa_n_Homo_ENST000004012 109 9.53e-16 AACCACAGAA CCCCTGCCTTTGGCAAGTTCATAGGCTG CTTCGGGGAG mac_n_Macaca_ENSMMUG0000 108 4.29e-15 AACCACAGAA CCCCTGCCTTCGGCAAGTTCATAGGCTG CTTGGGGGCA eca_n_Equus_Chr14 148 6.92e-15 AACGAGCTGA CCTCAGCCCTCGGCAAGCTCACAGGCTG CTCCTGGACC tbe_n_Tupaia_ENSTBEG0000 110 5.13e-14 AACGACAGAG TTTCTGCCTTTAGCAAGTTCACAGGCTG TTCGTGGGCC fca_n_Felis_ENSFCAG00000 151 6.69e-14 TGAGCTTGTC TCTTAGCCCTAGGCAAGATCACAGGCTG TCGGGGGAGA caf_n_Canis_ENSCAFG00000 180 2.16e-12 AAGGAGCGGT TCTCAGCCCTGGGTGACATCACAGGCTG GAGTGGGAGA mlu_n_Myotis_ENSMLUG0000 142 2.68e-11 AAAGAGCTGG CCGGAGTCATTGAAAAGTTCACTGACTG GTCCTGGGCC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- caj_n_Callithtrix_Contig 1.2e-16 107_[6]_515 ppy_n_Chr5 9.5e-16 108_[6]_515 ptr_n_Pan_ENSPTRG0000003 9.5e-16 108_[6]_515 hsa_n_Homo_ENST000004012 9.5e-16 108_[6]_515 mac_n_Macaca_ENSMMUG0000 4.3e-15 107_[6]_516 eca_n_Equus_Chr14 6.9e-15 147_[6]_473 tbe_n_Tupaia_ENSTBEG0000 5.1e-14 109_[6]_515 fca_n_Felis_ENSFCAG00000 6.7e-14 150_[6]_471 caf_n_Canis_ENSCAFG00000 2.2e-12 179_[6]_441 mlu_n_Myotis_ENSMLUG0000 2.7e-11 141_[6]_482 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 6 width=28 seqs=10 caj_n_Callithtrix_Contig ( 108) CCCCTGCCTTTGGCAAGTTCACAGGCTG 0.8 ppy_n_Chr5 ( 109) CCCCTGCCTTTGGCAAGTTCATAGGCTG 0.4 ptr_n_Pan_ENSPTRG0000003 ( 109) CCCCTGCCTTTGGCAAGTTCATAGGCTG 0.4 hsa_n_Homo_ENST000004012 ( 109) CCCCTGCCTTTGGCAAGTTCATAGGCTG 0.4 mac_n_Macaca_ENSMMUG0000 ( 108) CCCCTGCCTTCGGCAAGTTCATAGGCTG 0.8 eca_n_Equus_Chr14 ( 148) CCTCAGCCCTCGGCAAGCTCACAGGCTG 1 tbe_n_Tupaia_ENSTBEG0000 ( 110) TTTCTGCCTTTAGCAAGTTCACAGGCTG 1 fca_n_Felis_ENSFCAG00000 ( 151) TCTTAGCCCTAGGCAAGATCACAGGCTG 1 caf_n_Canis_ENSCAFG00000 ( 180) TCTCAGCCCTGGGTGACATCACAGGCTG 1 mlu_n_Myotis_ENSMLUG0000 ( 142) CCGGAGTCATTGAAAAGTTCACTGACTG 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 28 n= 16527 bayes= 11.0191 E= 2.5e-039 -961 128 -961 62 -961 178 -961 -96 -961 51 -111 104 -961 156 -111 -96 121 -961 -961 96 -961 -961 185 -961 -961 178 -961 -96 -961 198 -961 -961 -78 60 -961 96 -961 -961 -961 200 -78 -13 -111 104 -78 -961 165 -961 -78 -961 165 -961 -78 156 -961 -96 198 -961 -111 -961 218 -961 -961 -961 -961 -98 165 -961 22 -98 -961 130 -961 -961 -961 200 -961 198 -961 -961 218 -961 -961 -961 -961 156 -961 4 198 -961 -961 -96 -961 -961 185 -961 -78 -961 165 -961 -961 198 -961 -961 -961 -961 -961 200 -961 -961 185 -961 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 6 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 28 nsites= 10 E= 2.5e-039 0.000000 0.615385 0.000000 0.384615 0.000000 0.871795 0.000000 0.128205 0.000000 0.358974 0.128205 0.512821 0.000000 0.743590 0.128205 0.128205 0.512821 0.000000 0.000000 0.487179 0.000000 0.000000 1.000000 0.000000 0.000000 0.871795 0.000000 0.128205 0.000000 1.000000 0.000000 0.000000 0.128205 0.384615 0.000000 0.487179 0.000000 0.000000 0.000000 1.000000 0.128205 0.230769 0.128205 0.512821 0.128205 0.000000 0.871795 0.000000 0.128205 0.000000 0.871795 0.000000 0.128205 0.743590 0.000000 0.128205 0.871795 0.000000 0.128205 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.128205 0.871795 0.000000 0.256410 0.128205 0.000000 0.615385 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.743590 0.000000 0.256410 0.871795 0.000000 0.000000 0.128205 0.000000 0.000000 1.000000 0.000000 0.128205 0.000000 0.871795 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 -------------------------------------------------------------------------------- Time 150.77 secs. ******************************************************************************** ******************************************************************************** MOTIF 12 width = 20 sites = 4 llr = 98 E-value = 1.3e-001 ******************************************************************************** -------------------------------------------------------------------------------- Motif 12 Description -------------------------------------------------------------------------------- Simplified A aa:::::::::::::a:88: pos.-specific C :::3a53:a:5::::::::: probability G ::::::::::::::a:a3:: matrix T ::a8:58a:a5aaa::::3a bits 2.2 ** * 2.0 *** * *** ****** * 1.7 *** * *** ****** * 1.5 *** * *** ****** * Information 1.3 *** * *** ********* content 1.1 ******************** (35.2 bits) 0.9 ******************** 0.7 ******************** 0.4 ******************** 0.2 ******************** 0.0 -------------------- Multilevel AATTCCTTCTCTTTGAGAAT consensus C TC T GT sequence -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 12 sites sorted by position p-value -------------------------------------------------------------------------------- Sequence name Start P-value Site ------------- ----- --------- -------------------- fca_n_Felis_ENSFCAG00000 620 2.43e-12 TCTCTGTATT AATTCCTTCTTTTTGAGAAT TTTAGATTAT mlu_n_Myotis_ENSMLUG0000 619 2.43e-12 GACTCTACAT AATTCCTTCTTTTTGAGAAT TTTAAACGTG eca_n_Equus_Chr14 625 1.32e-11 AATTCTGTAT AATTCTTTCTCTTTGAGGAT ATTA caf_n_Canis_ENSCAFG00000 616 3.37e-11 GAGCTTCTAG AATCCTCTCTCTTTGAGATT TTTAAACTTC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 12 block diagrams -------------------------------------------------------------------------------- SEQUENCE NAME POSITION P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- fca_n_Felis_ENSFCAG00000 2.4e-12 619_[12]_10 mlu_n_Myotis_ENSMLUG0000 2.4e-12 618_[12]_13 eca_n_Equus_Chr14 1.3e-11 624_[12]_4 caf_n_Canis_ENSCAFG00000 3.4e-11 615_[12]_13 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 12 in BLOCKS format -------------------------------------------------------------------------------- BL MOTIF 12 width=20 seqs=4 fca_n_Felis_ENSFCAG00000 ( 620) AATTCCTTCTTTTTGAGAAT 1 mlu_n_Myotis_ENSMLUG0000 ( 619) AATTCCTTCTTTTTGAGAAT 1 eca_n_Equus_Chr14 ( 625) AATTCTTTCTCTTTGAGGAT 1 caf_n_Canis_ENSCAFG00000 ( 616) AATCCTCTCTCTTTGAGATT 1 // -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 12 position-specific scoring matrix -------------------------------------------------------------------------------- log-odds matrix: alength= 4 w= 20 n= 16847 bayes= 12.0399 E= 1.3e-001 218 -865 -865 -865 218 -865 -865 -865 -865 -865 -865 200 -865 -2 -865 159 -865 198 -865 -865 -865 98 -865 100 -865 -2 -865 159 -865 -865 -865 200 -865 198 -865 -865 -865 -865 -865 200 -865 98 -865 100 -865 -865 -865 200 -865 -865 -865 200 -865 -865 -865 200 -865 -865 185 -865 218 -865 -865 -865 -865 -865 185 -865 176 -865 -15 -865 176 -865 -865 0 -865 -865 -865 200 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- Motif 12 position-specific probability matrix -------------------------------------------------------------------------------- letter-probability matrix: alength= 4 w= 20 nsites= 4 E= 1.3e-001 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.250000 0.000000 0.750000 0.000000 1.000000 0.000000 0.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.500000 0.000000 0.500000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 1.000000 0.000000 1.000000 0.000000 0.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.750000 0.000000 0.250000 0.000000 0.750000 0.000000 0.000000 0.250000 0.000000 0.000000 0.000000 1.000000 -------------------------------------------------------------------------------- Time 295.23 secs. ******************************************************************************** ******************************************************************************** SUMMARY OF MOTIFS ******************************************************************************** -------------------------------------------------------------------------------- Combined block diagrams: non-overlapping sites with p-value < 0.0001 -------------------------------------------------------------------------------- SEQUENCE NAME COMBINED P-VALUE MOTIF DIAGRAM ------------- ---------------- ------------- hsa_1_Hs_AF045143_vaulta 2.36e-47 2_[11(1.81e-07)]_46_[6(1.48e-12)]_14_[8(4.28e-13)]_325_[4(2.16e-12)]_1_[7(4.13e-11)]_17_[2(2.75e-12)]_43_[1(1.72e-12)]_[3(4.52e-08)]_11_[1(6.21e-10)]_[3(3.62e-05)]_2 ptr_1_Pan_a_ENSPTRG00000 3.31e-46 1_[11(3.15e-06)]_47_[6(1.48e-12)]_14_[8(4.28e-13)]_325_[4(2.16e-12)]_1_[7(4.13e-11)]_17_[2(2.75e-12)]_43_[1(1.72e-12)]_[3(4.52e-08)]_11_[1(6.21e-10)]_[3(3.62e-05)]_2 ggo_1_Gorilla_gorilla 6.79e-46 66_[6(1.48e-12)]_14_[8(4.28e-13)]_325_[4(2.16e-12)]_1_[7(1.33e-12)]_17_[2(2.75e-12)]_43_[1(1.72e-12)]_[3(4.52e-08)]_11_[1(6.21e-10)]_[3(3.62e-05)]_2 ppy_1_Pongo_NSPPYG000000 4.89e-44 1_[11(1.31e-05)]_47_[6(1.48e-12)]_14_[8(1.47e-11)]_325_[4(1.36e-11)]_1_[7(1.33e-12)]_17_[2(2.75e-12)]_42_[1(1.20e-11)]_[3(4.52e-08)]_11_[1(6.21e-10)]_17 mac_1_Macaque_ENSMMUG000 8.86e-44 61_[6(2.66e-12)]_14_[8(4.87e-12)]_330_[4(2.16e-12)]_1_[7(1.33e-12)]_17_[2(2.75e-12)]_20_[4(8.11e-05)]_3_[1(1.72e-12)]_[3(1.28e-07)]_13_[1(2.65e-11)]_[3(3.25e-06)]_2 caj_1_Callithrix_jacchus 2.41e-41 7_[11(4.49e-08)]_45_[6(2.68e-09)]_14_[8(8.96e-13)]_322_[4(1.36e-11)]_1_[7(1.26e-11)]_17_[2(2.75e-12)]_45_[1(1.72e-12)]_[3(4.78e-05)]_47 hsa_2_Hs_AF045144_vaulta 2.61e-48 7_[11(6.45e-08)]_47_[6(1.48e-12)]_14_[8(4.28e-13)]_319_[4(2.16e-12)]_1_[7(1.33e-12)]_17_[2(2.75e-12)]_33_[1(3.43e-12)]_[3(8.95e-07)]_48 ptr_2_Pan_b_ENSPTRG00000 1.93e-48 7_[11(1.51e-07)]_47_[6(1.48e-12)]_14_[8(4.28e-13)]_319_[4(2.16e-12)]_1_[7(1.33e-12)]_17_[2(2.75e-12)]_33_[1(3.43e-12)]_[3(8.95e-07)]_48 hsa_3_Hs_AF045145_vaulta 1.98e-44 1_[11(2.07e-06)]_51_[6(1.48e-12)]_14_[8(4.28e-13)]_321_[4(2.16e-12)]_1_[7(6.61e-11)]_17_[2(2.75e-12)]_33_[1(1.72e-12)]_[3(2.57e-06)]_48 ptr_3_Pan_c_ENSPTRG00000 2.80e-42 5_[11(2.07e-06)]_47_[6(1.48e-12)]_14_[8(4.28e-13)]_321_[4(2.16e-12)]_1_[7(6.61e-11)]_17_[2(2.75e-12)]_33_[1(1.97e-11)]_63 ggo_2,3_Gorilla_gorilla 3.25e-47 7_[11(1.21e-06)]_47_[6(1.48e-12)]_14_[8(4.28e-13)]_319_[4(2.16e-12)]_1_[7(1.33e-12)]_17_[2(2.75e-12)]_33_[1(3.43e-12)]_[3(7.27e-07)]_48 ppy_2,3_Pongo_ENSPPYG000 5.15e-48 7_[11(1.34e-06)]_47_[6(1.48e-12)]_14_[8(4.28e-13)]_319_[4(2.16e-12)]_1_[7(1.33e-12)]_17_[2(2.75e-12)]_33_[1(3.43e-12)]_[3(8.95e-07)]_48 mac_2,3_Macaque_ENSMMUG0 6.25e-49 3_[11(1.24e-07)]_47_[6(1.48e-12)]_14_[8(4.28e-13)]_323_[4(2.16e-12)]_1_[7(1.33e-12)]_17_[2(2.75e-12)]_33_[1(6.18e-12)]_[3(2.54e-08)]_48 caj_2,3_Callithrix_jacch 2.35e-48 67_[11(1.24e-07)]_46_[6(9.34e-12)]_14_[8(8.96e-13)]_260_[4(2.16e-12)]_1_[7(1.33e-12)]_17_[2(2.75e-12)]_33_[1(1.01e-11)]_[3(2.54e-08)]_48 mmu_s_Mus_musculus 8.17e-35 127_[6(2.07e-11)]_14_[8(3.04e-11)]_265_[4(1.13e-08)]_[7(2.30e-09)]_17_[2(3.32e-11)]_87_[1(1.72e-12)]_[3(1.13e-07)]_48 rno_s_Rattus_norvegicus 1.56e-36 115_[6(2.07e-11)]_14_[8(3.04e-11)]_277_[4(1.13e-09)]_[7(1.28e-08)]_17_[2(3.32e-11)]_88_[1(1.72e-12)]_[3(3.48e-09)]_48 str_s_Spermophilus_ENSST 9.45e-44 57_[11(5.28e-08)]_70_[6(1.36e-08)]_9_[8(6.87e-12)]_251_[4(1.24e-10)]_1_[7(1.28e-08)]_17_[2(2.75e-12)]_32_[1(1.72e-12)]_[3(1.94e-07)]_14_[10(5.30e-08)]_19 cpo_s1_Cavia_ENSCPOG0000 5.81e-15 445_[4(8.89e-05)]_37_[2(2.75e-12)]_54_[1(1.72e-12)]_[3(1.08e-08)]_48 cpo_s2_Cavia_ENSCPOG0000 6.29e-17 59_[6(2.40e-06)]_366_[4(1.43e-07)]_37_[2(6.20e-10)]_40_[1(4.83e-11)]_[3(2.99e-08)]_48 opr_s1_Ochotona_ENSOPRG0 1.63e-19 110_[6(4.52e-09)]_6_[4(3.79e-05)]_346_[2(2.75e-12)]_42_[1(3.04e-11)]_[3(1.77e-06)]_48 opr_s3_Ochotona_ENSOPRG0 5.50e-20 87_[6(1.03e-08)]_338_[4(1.93e-08)]_37_[2(1.96e-10)]_43_[1(3.04e-11)]_[3(1.08e-08)]_48 tbe_s_Tupaia_ENSTBEG0000 6.05e-44 25_[11(1.85e-10)]_11_[11(2.90e-05)]_35_[6(9.69e-11)]_14_[8(4.51e-07)]_284_[4(4.99e-11)]_1_[7(4.92e-11)]_17_[2(2.75e-12)]_80_[1(1.17e-10)]_[3(3.82e-07)]_12_[10(1.37e-09)]_20 bta_s_Bos_ENSBTAG0000002 5.38e-37 58_[6(7.19e-10)]_14_[8(1.27e-10)]_333_[4(3.73e-07)]_1_[7(2.96e-09)]_17_[2(3.45e-10)]_20_[12(3.21e-05)]_1_[1(1.72e-12)]_[3(1.08e-08)]_12_[10(1.65e-08)]_21 eca_s_14 5.46e-36 9_[11(5.29e-11)]_54_[6(1.17e-11)]_14_[8(9.38e-11)]_315_[4(7.00e-09)]_1_[7(9.93e-06)]_12_[2(3.45e-10)]_38_[1(1.59e-10)]_28_[10(5.07e-09)]_14 mlu_s_Myotis_scaffold_80 9.24e-29 446_[4(2.42e-07)]_1_[7(1.28e-08)]_17_[2(2.75e-12)]_50_[1(1.72e-12)]_[3(2.15e-09)]_13_[10(7.33e-10)]_20 fca_s_felCat3_184009:139 6.47e-31 54_[11(6.92e-12)]_5_[11(5.71e-05)]_47_[6(4.17e-08)]_13_[8(8.22e-06)]_271_[7(4.16e-10)]_17_[2(1.11e-08)]_34_[1(9.58e-09)]_[3(2.99e-08)]_16_[10(7.33e-10)]_17 sar_s_Sorex_ENSSARG00000 6.39e-24 134_[11(9.23e-05)]_[11(9.90e-05)]_12_[11(4.95e-10)]_246_[4(1.01e-06)]_36_[2(2.75e-12)]_44_[1(1.72e-12)]_[3(1.08e-08)]_48 Choloepus_s_TA_136829265 1.01e-17 43_[6(4.17e-08)]_401_[7(1.35e-09)]_17_[2(1.57e-08)]_41_[1(2.14e-10)]_[3(3.19e-07)]_64 hsa_n_Homo_ENST000004012 1.03e-28 9_[5(9.89e-13)]_32_[9(2.43e-11)]_318_[4(6.36e-09)]_84_[2(4.26e-09)]_45_[1(3.43e-12)]_[3(6.68e-07)]_48 ptr_n_Pan_ENSPTRG0000003 1.03e-28 9_[5(9.89e-13)]_32_[9(2.43e-11)]_318_[4(6.36e-09)]_84_[2(4.26e-09)]_45_[1(3.43e-12)]_[3(6.68e-07)]_48 ppy_n_Chr5 4.27e-28 9_[5(9.89e-13)]_32_[9(2.43e-11)]_318_[4(6.36e-09)]_84_[2(4.26e-09)]_45_[1(3.43e-12)]_[3(6.68e-07)]_48 mac_n_Macaca_ENSMMUG0000 1.99e-28 8_[5(9.89e-13)]_32_[9(2.43e-11)]_319_[4(6.02e-08)]_84_[2(4.26e-09)]_45_[1(3.43e-12)]_[3(6.68e-07)]_48 caj_n_Callithtrix_Contig 7.16e-27 7_[5(5.28e-13)]_32_[9(1.13e-11)]_320_[4(3.77e-09)]_46_[6(8.84e-05)]_18_[2(4.26e-09)]_44_[1(1.46e-09)]_17_[11(1.05e-05)]_28 cpo_n_Cavia_ENSCPOG00000 1.08e-23 56_[5(1.71e-09)]_13_[9(3.34e-09)]_123_[1(1.27e-05)]_153_[4(2.19e-06)]_78_[2(3.08e-10)]_46_[1(3.43e-12)]_[3(1.13e-07)]_48 tbe_n_Tupaia_ENSTBEG0000 5.54e-30 17_[5(3.19e-10)]_24_[9(1.26e-12)]_322_[4(3.77e-09)]_80_[2(3.08e-10)]_8_[7(4.93e-05)]_19_[1(3.43e-12)]_[3(1.13e-07)]_48 eca_n_Equus_Chr14 2.10e-33 57_[5(9.43e-12)]_34_[9(3.56e-11)]_163_[12(6.39e-05)]_88_[4(8.10e-08)]_81_[2(1.10e-09)]_42_[1(2.65e-11)]_[3(2.99e-08)]_24_[12(1.32e-11)]_4 mlu_n_Myotis_ENSMLUG0000 2.11e-32 44_[5(1.07e-09)]_31_[9(1.13e-10)]_295_[4(9.63e-07)]_73_[2(9.01e-10)]_45_[1(1.72e-12)]_[3(4.24e-07)]_15_[12(2.43e-12)]_13 fca_n_Felis_ENSFCAG00000 8.42e-31 48_[5(7.41e-11)]_31_[9(1.01e-09)]_384_[2(3.08e-10)]_24_[3(8.88e-05)]_4_[1(3.43e-12)]_[3(1.13e-07)]_18_[12(2.43e-12)]_10 caf_n_Canis_ENSCAFG00000 4.26e-28 67_[5(6.52e-10)]_44_[9(8.19e-09)]_330_[4(2.00e-06)]_2_[2(6.59e-09)]_42_[1(1.72e-12)]_[3(2.16e-07)]_15_[12(3.37e-11)]_13 oan_ne_Platypus_OANA5_Ul 4.31e-05 473_[2(2.19e-05)]_9_[2(3.45e-10)]_65_[3(3.41e-07)]_50 -------------------------------------------------------------------------------- ******************************************************************************** ******************************************************************************** Stopped because motif E-value > 5.00e+00. ******************************************************************************** CPU: dschinn ********************************************************************************